Wall clock time and date at job start Mon Mar 30 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50694 * 109.47115 * 90.00278 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34777 * 119.99744 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 H 1.09003 * 115.55089 * 325.67094 * 14 12 2 16 16 C 1.53004 * 117.50009 * 111.37643 * 14 12 2 17 17 C 1.53004 * 60.00096 * 107.48833 * 16 14 12 18 18 H 1.08994 * 117.50006 * 107.48523 * 17 16 14 19 19 C 1.50697 * 117.51740 * 252.52338 * 17 16 14 20 20 C 1.38237 * 120.00152 * 8.35238 * 19 17 16 21 21 C 1.38236 * 119.99796 * 179.77163 * 20 19 17 22 22 C 1.38238 * 120.00190 * 0.47988 * 21 20 19 23 23 C 1.38237 * 119.99865 * 359.79534 * 22 21 20 24 24 C 1.38234 * 119.99848 * 188.62718 * 19 17 16 25 25 H 1.09000 * 109.47436 * 89.99632 * 1 2 3 26 26 H 1.09000 * 109.47148 * 210.00501 * 1 2 3 27 27 H 1.09004 * 109.46943 * 329.99756 * 1 2 3 28 28 H 1.09007 * 109.47078 * 329.99917 * 3 2 1 29 29 H 1.09003 * 109.46733 * 210.00639 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08999 * 117.50052 * 214.97692 * 16 14 12 32 32 H 1.08996 * 117.49528 * 359.97438 * 16 14 12 33 33 H 1.07994 * 119.99755 * 359.97438 * 20 19 17 34 34 H 1.07999 * 120.00051 * 180.25403 * 21 20 19 35 35 H 1.08000 * 120.00004 * 179.77128 * 22 21 20 36 36 H 1.07999 * 120.00060 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.99944 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1262 2.8779 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4369 3.4175 3.4339 9 1 2.3066 4.2601 3.9002 10 1 3.5543 2.2205 4.3049 11 1 4.6971 4.2007 3.4965 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.4472 -2.4734 0.5544 16 6 1.4600 -3.3312 -1.2645 17 6 2.2074 -3.7627 -0.0012 18 1 1.8099 -4.6129 0.5531 19 6 3.7087 -3.6313 -0.0012 20 6 4.3454 -2.9792 -1.0406 21 6 5.7221 -2.8545 -1.0382 22 6 6.4629 -3.3906 -0.0015 23 6 5.8266 -4.0477 1.0350 24 6 4.4495 -4.1678 1.0352 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6085 2.0284 -0.5139 29 1 3.1499 1.1383 -0.5140 30 1 4.0296 4.4443 0.8503 31 1 0.5708 -3.8975 -1.5414 32 1 2.0538 -2.9521 -2.0962 33 1 3.7670 -2.5643 -1.8528 34 1 6.2192 -2.3415 -1.8482 35 1 7.5388 -3.2964 -0.0016 36 1 6.4054 -4.4669 1.8448 37 1 3.9524 -4.6815 1.8448 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109028427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:31 Heat of formation + Delta-G solvation = 28.067677 kcal Electronic energy + Delta-G solvation = -19298.085381 eV Core-core repulsion = 16427.677816 eV Total energy + Delta-G solvation = -2870.407565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02763 -38.18560 -36.04735 -34.63114 -32.55843 -30.48980 -30.13371 -27.98715 -25.84969 -24.29209 -23.54437 -22.11367 -21.76307 -20.12312 -18.21995 -17.06450 -16.47565 -16.12431 -15.16568 -14.93322 -14.63434 -14.33395 -14.10369 -13.73438 -13.23366 -12.91442 -12.61746 -12.34590 -12.16625 -12.12063 -11.74161 -11.65282 -11.21109 -10.90249 -10.75169 -10.71615 -10.54461 -10.33784 -10.22996 -10.10316 -9.59488 -9.00407 -8.41683 -8.33134 -7.76164 -7.52594 -6.02399 -4.06741 1.79550 1.96621 3.23125 3.31030 3.37737 3.43129 3.95063 4.07854 4.39480 4.46895 4.80444 4.98685 5.08891 5.20838 5.30324 5.35361 5.42180 5.45585 5.51680 5.73189 5.77315 5.83542 5.94672 6.02952 6.03733 6.21383 6.26419 6.46777 6.51688 6.92316 7.00249 7.08514 7.11170 7.46407 7.50841 7.58845 7.94519 8.26015 8.47618 8.93416 9.17726 9.58418 11.05565 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.006778 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.495194 B = 4130.118760 C = 4987.040213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.600 5.600 3 C 0.247 3.753 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 C 0.526 3.474 13 O -0.519 6.519 14 C -0.177 4.177 15 H 0.121 0.879 16 C -0.152 4.152 17 C -0.088 4.088 18 H 0.115 0.885 19 C -0.042 4.042 20 C -0.045 4.045 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.115 4.115 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 -14.934 -3.340 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 C 0.312 3.688 13 O -0.396 6.396 14 C -0.198 4.198 15 H 0.139 0.861 16 C -0.189 4.189 17 C -0.106 4.106 18 H 0.133 0.867 19 C -0.042 4.042 20 C -0.063 4.063 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.152 4.152 24 C -0.133 4.133 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.112 -14.712 -3.384 15.413 hybrid contribution -0.048 0.696 1.179 1.370 sum -3.160 -14.016 -2.204 14.536 Atomic orbital electron populations 1.21629 0.81686 1.02323 1.00293 1.48138 1.06068 1.07683 1.71259 1.19255 0.92472 0.78055 0.97411 1.21433 1.36350 1.06151 0.92337 0.92562 1.24930 0.95378 0.96427 0.97370 1.69935 1.38540 1.14306 1.30674 0.86514 0.77666 0.78581 0.84789 1.20656 1.19905 1.21074 1.19411 0.87625 0.84000 0.77766 1.90744 1.13158 1.86219 1.49477 1.22493 1.01704 0.91663 1.03980 0.86086 1.23066 1.02477 1.01800 0.91580 1.21034 0.91170 0.96913 1.01492 0.86717 1.18772 0.92161 0.98263 0.95017 1.20671 0.93993 0.94222 0.97389 1.20927 0.94160 1.00312 0.99036 1.20969 0.99209 0.98940 0.94884 1.20876 0.94462 1.01247 0.98613 1.20720 0.93911 1.00991 0.97646 0.93863 0.92480 0.91019 0.95181 0.93879 0.92772 0.87857 0.88065 0.87176 0.86892 0.87019 0.86959 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.27 59.85 0.61 1.99 16 2 N -0.60 -12.90 2.86 -182.95 -0.52 -13.43 16 3 C 0.25 6.56 5.16 -5.20 -0.03 6.54 16 4 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 8 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.53 10.94 7.32 -10.99 -0.08 10.86 16 13 O -0.52 -12.64 11.30 5.56 0.06 -12.57 16 14 C -0.18 -2.68 5.29 -91.77 -0.49 -3.17 16 15 H 0.12 1.56 6.44 -51.93 -0.33 1.22 16 16 C -0.15 -1.86 9.58 -26.73 -0.26 -2.12 16 17 C -0.09 -1.22 6.04 -91.77 -0.55 -1.77 16 18 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 19 C -0.04 -0.70 4.35 -104.63 -0.46 -1.15 16 20 C -0.04 -0.78 6.19 -39.58 -0.24 -1.03 16 21 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 22 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 24 C -0.11 -1.82 9.74 -39.58 -0.39 -2.20 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 27 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.33 6.17 -51.93 -0.32 1.00 16 33 H 0.11 1.89 5.80 -52.49 -0.30 1.58 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -33.59 307.98 -8.59 -42.18 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.00 Total: 1.35 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.49 Total: -13.21 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.21 Total: -39.68 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.57 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.59 -8.59 -42.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.245 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds