Wall clock time and date at job start Mon Mar 30 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50694 * 109.47115 * 90.00278 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34777 * 119.99744 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 H 1.09003 * 115.55089 * 325.67094 * 14 12 2 16 16 C 1.53004 * 117.50009 * 111.37643 * 14 12 2 17 17 C 1.53004 * 60.00096 * 107.48833 * 16 14 12 18 18 H 1.08994 * 117.50006 * 107.48523 * 17 16 14 19 19 C 1.50697 * 117.51740 * 252.52338 * 17 16 14 20 20 C 1.38237 * 120.00152 * 8.35238 * 19 17 16 21 21 C 1.38236 * 119.99796 * 179.77163 * 20 19 17 22 22 C 1.38238 * 120.00190 * 0.47988 * 21 20 19 23 23 C 1.38237 * 119.99865 * 359.79534 * 22 21 20 24 24 C 1.38234 * 119.99848 * 188.62718 * 19 17 16 25 25 H 1.09000 * 109.47436 * 89.99632 * 1 2 3 26 26 H 1.09000 * 109.47148 * 210.00501 * 1 2 3 27 27 H 1.09004 * 109.46943 * 329.99756 * 1 2 3 28 28 H 1.09007 * 109.47078 * 329.99917 * 3 2 1 29 29 H 1.09003 * 109.46733 * 210.00639 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08999 * 117.50052 * 214.97692 * 16 14 12 32 32 H 1.08996 * 117.49528 * 359.97438 * 16 14 12 33 33 H 1.07994 * 119.99755 * 359.97438 * 20 19 17 34 34 H 1.07999 * 120.00051 * 180.25403 * 21 20 19 35 35 H 1.08000 * 120.00004 * 179.77128 * 22 21 20 36 36 H 1.07999 * 120.00060 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.99944 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1262 2.8779 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4369 3.4175 3.4339 9 1 2.3066 4.2601 3.9002 10 1 3.5543 2.2205 4.3049 11 1 4.6971 4.2007 3.4965 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.4472 -2.4734 0.5544 16 6 1.4600 -3.3312 -1.2645 17 6 2.2074 -3.7627 -0.0012 18 1 1.8099 -4.6129 0.5531 19 6 3.7087 -3.6313 -0.0012 20 6 4.3454 -2.9792 -1.0406 21 6 5.7221 -2.8545 -1.0382 22 6 6.4629 -3.3906 -0.0015 23 6 5.8266 -4.0477 1.0350 24 6 4.4495 -4.1678 1.0352 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6085 2.0284 -0.5139 29 1 3.1499 1.1383 -0.5140 30 1 4.0296 4.4443 0.8503 31 1 0.5708 -3.8975 -1.5414 32 1 2.0538 -2.9521 -2.0962 33 1 3.7670 -2.5643 -1.8528 34 1 6.2192 -2.3415 -1.8482 35 1 7.5388 -3.2964 -0.0016 36 1 6.4054 -4.4669 1.8448 37 1 3.9524 -4.6815 1.8448 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109028427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:31 Heat of formation + Delta-G solvation = 8.356883 kcal Electronic energy + Delta-G solvation = -19298.940105 eV Core-core repulsion = 16427.677816 eV Total energy + Delta-G solvation = -2871.262289 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36705 -39.57651 -37.33208 -36.32831 -34.69974 -31.71070 -31.37768 -29.94749 -27.32417 -26.06154 -24.68577 -23.57977 -23.18460 -21.30343 -19.66432 -18.73005 -18.37188 -17.51085 -16.88485 -16.26197 -16.15696 -15.92541 -15.52711 -15.01697 -14.67487 -14.23737 -14.10403 -13.87727 -13.71224 -13.51585 -13.36831 -13.13350 -12.79194 -12.73024 -12.55535 -12.20665 -11.95048 -11.82195 -11.72105 -11.49979 -11.29191 -10.66009 -10.51297 -9.61583 -9.31109 -9.01481 -8.23766 -6.38781 0.56796 0.71266 1.33006 1.36326 1.46543 1.81605 2.31734 2.47654 2.85023 3.05004 3.23063 3.63188 3.87904 3.96268 4.07262 4.12051 4.23518 4.33429 4.37493 4.55509 4.68290 4.72888 4.79619 4.86124 4.92170 5.02584 5.04530 5.16767 5.24274 5.29239 5.30335 5.56267 5.70067 5.75690 5.87168 5.87681 6.05986 6.30506 6.69458 6.86580 7.28073 7.59774 8.82664 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.006778 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.495194 B = 4130.118760 C = 4987.040213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.611 5.611 3 C 0.264 3.736 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.275 1.275 11 H -0.280 1.280 12 C 0.512 3.488 13 O -0.566 6.566 14 C -0.185 4.185 15 H 0.154 0.846 16 C -0.127 4.127 17 C -0.090 4.090 18 H 0.151 0.849 19 C -0.057 4.057 20 C -0.065 4.065 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.127 4.127 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.019 0.981 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -16.739 -1.853 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.343 5.343 3 C 0.142 3.858 4 C -0.579 4.579 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.790 3.210 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.301 3.699 13 O -0.446 6.446 14 C -0.205 4.205 15 H 0.171 0.829 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.169 0.831 19 C -0.057 4.057 20 C -0.083 4.083 21 C -0.170 4.170 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.145 4.145 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.966 -16.537 -1.907 17.371 hybrid contribution 0.553 1.254 0.651 1.518 sum -4.413 -15.282 -1.256 15.956 Atomic orbital electron populations 1.21893 0.78286 1.03652 1.02292 1.48169 1.08218 1.06287 1.71608 1.18659 0.90910 0.80458 0.95743 1.21691 1.36684 1.06411 0.93085 0.93178 1.25857 0.94935 0.96470 1.01921 1.70054 1.39050 1.14761 1.32975 0.85441 0.78167 0.78179 0.79193 1.18617 1.19947 1.20576 1.20485 0.87601 0.85550 0.76282 1.90729 1.15513 1.87159 1.51179 1.22417 1.02416 0.88556 1.07144 0.82865 1.23226 1.03293 0.99873 0.89999 1.21284 0.89441 0.97037 1.03069 0.83097 1.19168 0.94171 0.97753 0.94652 1.20773 0.94261 0.95148 0.98098 1.21187 0.94676 1.01192 0.99985 1.21278 1.00349 0.98962 0.94805 1.21288 0.94980 1.00711 0.98985 1.21139 0.94298 1.00940 0.98097 0.91478 0.88743 0.92067 0.96344 0.98582 0.92446 0.83359 0.89705 0.88132 0.86745 0.85110 0.84341 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.47 10.27 127.77 1.31 3.78 16 2 N -0.61 -26.48 2.86 -851.12 -2.43 -28.91 16 3 C 0.26 14.63 5.16 85.63 0.44 15.07 16 4 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.41 5.46 84.66 0.46 0.87 16 7 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 8 Si 0.97 46.05 29.54 68.60 2.03 48.07 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.51 21.29 7.32 87.66 0.64 21.93 16 13 O -0.57 -28.57 11.30 -3.03 -0.03 -28.60 16 14 C -0.18 -5.05 5.29 -11.54 -0.06 -5.11 16 15 H 0.15 3.17 6.44 -2.39 -0.02 3.16 16 16 C -0.13 -2.69 9.58 30.60 0.29 -2.40 16 17 C -0.09 -2.23 6.04 -11.54 -0.07 -2.30 16 18 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 19 C -0.06 -1.86 4.35 -19.87 -0.09 -1.94 16 20 C -0.06 -2.34 6.19 22.27 0.14 -2.20 16 21 C -0.15 -5.43 10.05 22.27 0.22 -5.20 16 22 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 23 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 24 C -0.13 -3.84 9.74 22.27 0.22 -3.62 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 2.15 6.00 -2.39 -0.01 2.14 16 27 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 28 H 0.02 1.04 8.07 -2.38 -0.02 1.03 16 29 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 30 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.12 6.17 -2.39 -0.01 2.11 16 33 H 0.10 3.67 5.80 -2.91 -0.02 3.65 16 34 H 0.11 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -76.95 307.98 5.10 -71.85 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.06 Total: 15.81 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 4.20 Total: -21.09 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.15 Total: -86.04 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.03 Total: -28.60 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.95 5.10 -71.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.207 kcal (2) G-P(sol) polarization free energy of solvation -76.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds