Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52996 * 109.47149 * 119.99743 * 2 1 3 5 5 N 1.46494 * 109.47321 * 175.00314 * 4 2 1 6 6 C 1.46505 * 120.00202 * 270.00326 * 5 4 2 7 7 C 1.50696 * 109.46794 * 269.99954 * 6 5 4 8 8 H 1.07997 * 120.00135 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99931 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99919 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00202 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47596 * 119.99538 * 11 9 7 14 14 H 1.48500 * 109.47133 * 240.00158 * 11 9 7 15 15 C 1.39235 * 120.00419 * 89.99750 * 5 4 2 16 16 C 1.39455 * 120.39046 * 179.97438 * 15 5 4 17 17 C 1.38195 * 118.45057 * 180.02562 * 16 15 5 18 18 C 1.39630 * 119.14286 * 359.97438 * 17 16 15 19 19 C 1.43195 * 119.65070 * 180.02562 * 18 17 16 20 20 N 7.95074 * 134.93118 * 43.11924 * 2 1 3 21 21 N 1.32868 * 120.69526 * 359.97438 * 18 17 16 22 22 C 1.31424 * 121.69590 * 0.02562 * 21 18 17 23 23 H 1.08998 * 109.47283 * 299.99736 * 1 2 3 24 24 H 1.08992 * 109.47291 * 60.00676 * 1 2 3 25 25 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46877 * 240.00022 * 2 1 3 27 27 H 1.09000 * 109.47270 * 59.99359 * 3 2 1 28 28 H 1.08996 * 109.46964 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46742 * 300.00096 * 3 2 1 30 30 H 1.09000 * 109.47278 * 54.99973 * 4 2 1 31 31 H 1.09000 * 109.47331 * 295.00030 * 4 2 1 32 32 H 1.09006 * 109.46607 * 29.99230 * 6 5 4 33 33 H 1.08996 * 109.47419 * 149.99232 * 6 5 4 34 34 H 0.97003 * 119.99945 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.77429 * 0.03449 * 16 15 5 36 36 H 1.08000 * 120.42816 * 179.97438 * 17 16 15 37 37 H 1.08001 * 119.60170 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1259 -1.9918 0.5613 7 6 4.3422 -3.0658 1.5961 8 1 4.0437 -2.8969 2.6201 9 6 4.9211 -4.2640 1.2354 10 7 5.2842 -4.4699 -0.0117 11 14 5.1898 -5.5951 2.5182 12 1 4.6991 -5.1185 3.8363 13 1 4.4458 -6.8186 2.1254 14 1 6.6389 -5.9058 2.6130 15 6 4.2930 0.1816 1.7330 16 6 5.6835 0.0896 1.6821 17 6 6.4316 1.1125 2.2332 18 6 5.7743 2.1968 2.8180 19 6 6.5388 3.2630 3.3918 20 7 7.1453 4.1086 3.8474 21 7 4.4470 2.2501 2.8468 22 6 3.7063 1.2944 2.3319 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6054 -1.7197 1.2952 31 1 1.7517 -0.1582 2.1370 32 1 3.4757 -2.3721 -0.2267 33 1 5.0852 -1.7019 0.1325 34 1 5.6911 -5.3131 -0.2655 35 1 6.1646 -0.7612 1.2226 36 1 7.5107 1.0738 2.2119 37 1 2.6299 1.3726 2.3736 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123642137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = 59.365132 kcal Electronic energy + Delta-G solvation = -18999.741314 eV Core-core repulsion = 16162.983660 eV Total energy + Delta-G solvation = -2836.757655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15102 -37.60075 -35.99532 -34.58179 -32.80117 -31.77850 -30.20269 -27.84876 -27.02558 -25.61207 -24.08642 -22.73439 -21.39538 -19.85501 -18.78882 -16.91288 -16.57800 -16.30831 -14.94723 -14.67727 -14.59782 -14.31471 -13.96914 -13.90629 -13.30903 -12.84389 -12.76177 -12.58616 -12.42933 -12.38649 -12.15823 -11.88420 -11.65668 -11.40172 -11.22534 -11.01111 -10.82658 -10.69656 -10.49204 -10.29238 -10.13252 -9.51247 -9.20449 -9.11461 -8.68053 -6.88667 -6.24919 -4.36887 1.24925 1.69913 2.91029 3.15314 3.24577 3.26161 3.29237 3.64207 4.10344 4.25177 4.37539 4.90658 5.03982 5.05239 5.08615 5.18892 5.26106 5.46533 5.56008 5.65231 5.70320 5.78743 5.87834 5.93302 6.02361 6.11221 6.19851 6.30681 6.43366 6.47853 6.54982 6.74699 6.89396 7.06287 7.59037 7.75668 7.81140 7.92827 7.96768 8.25570 8.71122 9.31454 10.77579 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.007218 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.715440 B = 3878.054624 C = 5479.609163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.120 3.880 5 N -0.580 5.580 6 C 0.243 3.757 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.223 3.777 16 C -0.161 4.161 17 C -0.062 4.062 18 C 0.071 3.929 19 C 0.293 3.707 20 N -0.441 5.441 21 N -0.411 5.411 22 C 0.010 3.990 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.153 0.847 36 H 0.134 0.866 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 6.144 -0.838 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.206 4.206 4 C -0.004 4.004 5 N -0.279 5.279 6 C 0.124 3.876 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.108 3.892 16 C -0.190 4.190 17 C -0.086 4.086 18 C -0.069 4.069 19 C -0.023 4.023 20 N -0.119 5.119 21 N -0.121 5.121 22 C -0.159 4.159 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.152 0.848 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.594 7.800 0.011 9.599 hybrid contribution 0.322 -2.036 0.017 2.061 sum -5.272 5.764 0.028 7.812 Atomic orbital electron populations 1.21767 0.94966 1.01804 1.01592 1.21611 0.95510 0.96795 0.99714 1.22032 1.01697 0.95579 1.01257 1.21588 0.80446 1.01464 0.96855 1.47361 1.04189 1.19589 1.56759 1.19482 0.94002 0.80936 0.93207 1.21525 1.41222 0.99152 0.95809 0.91952 1.24940 0.95006 0.98348 0.95479 1.69922 1.41062 1.25424 1.16516 0.86453 0.78089 0.81438 0.81599 1.19645 1.20847 1.20755 1.19197 0.91742 0.88677 0.89585 1.21250 0.91926 1.00920 1.04926 1.21647 1.00652 0.91838 0.94447 1.15883 0.88881 0.93170 1.08916 1.25149 0.92628 0.92085 0.92404 1.81162 1.10004 1.10127 1.10636 1.67161 1.04966 1.27063 1.12861 1.22340 0.99623 0.90956 1.02971 0.92718 0.92758 0.92520 0.90656 0.92517 0.92187 0.93239 0.89708 0.91296 0.94407 0.94287 0.92465 0.82927 0.84790 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.12 -1.44 3.13 -90.62 -0.28 -1.72 16 3 C -0.15 -1.77 7.63 37.16 0.28 -1.49 16 4 C 0.12 1.71 4.95 -4.05 -0.02 1.69 16 5 N -0.58 -10.01 2.44 -172.96 -0.42 -10.43 16 6 C 0.24 5.18 4.93 -5.19 -0.03 5.15 16 7 C -0.54 -13.00 9.39 -34.44 -0.32 -13.33 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -23.44 13.29 55.43 0.74 -22.71 16 11 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 C 0.22 3.71 5.39 -83.64 -0.45 3.26 16 16 C -0.16 -2.67 9.28 -39.14 -0.36 -3.04 16 17 C -0.06 -0.93 9.78 -39.08 -0.38 -1.31 16 18 C 0.07 1.12 6.59 -84.98 -0.56 0.56 16 19 C 0.29 4.78 15.53 -22.48 -0.35 4.43 16 20 N -0.44 -7.68 18.54 41.84 0.78 -6.91 16 21 N -0.41 -6.72 10.26 -10.92 -0.11 -6.83 16 22 C 0.01 0.15 8.32 -17.32 -0.14 0.01 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.63 6.66 -51.93 -0.35 0.28 16 28 H 0.06 0.83 5.86 -51.93 -0.30 0.52 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.27 8.07 -51.93 -0.42 0.86 16 31 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 32 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 0.88 6.23 -51.93 -0.32 0.55 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.15 2.72 6.25 -52.49 -0.33 2.39 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.16 2.11 4.39 -52.49 -0.23 1.88 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -26.29 311.59 -6.50 -32.78 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.77 Total: -0.01 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.37 Total: -5.34 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.98 Total: -46.87 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.29 -6.50 -32.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123642137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.150 kcal (2) G-P(sol) polarization free energy of solvation -26.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds