Wall clock time and date at job start Mon Mar 30 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52996 * 109.47149 * 119.99743 * 2 1 3 5 5 N 1.46494 * 109.47321 * 175.00314 * 4 2 1 6 6 C 1.46505 * 120.00202 * 270.00326 * 5 4 2 7 7 C 1.50696 * 109.46794 * 269.99954 * 6 5 4 8 8 H 1.07997 * 120.00135 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99931 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99919 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00202 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47596 * 119.99538 * 11 9 7 14 14 H 1.48500 * 109.47133 * 240.00158 * 11 9 7 15 15 C 1.39235 * 120.00419 * 89.99750 * 5 4 2 16 16 C 1.39455 * 120.39046 * 179.97438 * 15 5 4 17 17 C 1.38195 * 118.45057 * 180.02562 * 16 15 5 18 18 C 1.39630 * 119.14286 * 359.97438 * 17 16 15 19 19 C 1.43195 * 119.65070 * 180.02562 * 18 17 16 20 20 N 7.95074 * 134.93118 * 43.11924 * 2 1 3 21 21 N 1.32868 * 120.69526 * 359.97438 * 18 17 16 22 22 C 1.31424 * 121.69590 * 0.02562 * 21 18 17 23 23 H 1.08998 * 109.47283 * 299.99736 * 1 2 3 24 24 H 1.08992 * 109.47291 * 60.00676 * 1 2 3 25 25 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46877 * 240.00022 * 2 1 3 27 27 H 1.09000 * 109.47270 * 59.99359 * 3 2 1 28 28 H 1.08996 * 109.46964 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46742 * 300.00096 * 3 2 1 30 30 H 1.09000 * 109.47278 * 54.99973 * 4 2 1 31 31 H 1.09000 * 109.47331 * 295.00030 * 4 2 1 32 32 H 1.09006 * 109.46607 * 29.99230 * 6 5 4 33 33 H 1.08996 * 109.47419 * 149.99232 * 6 5 4 34 34 H 0.97003 * 119.99945 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.77429 * 0.03449 * 16 15 5 36 36 H 1.08000 * 120.42816 * 179.97438 * 17 16 15 37 37 H 1.08001 * 119.60170 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1259 -1.9918 0.5613 7 6 4.3422 -3.0658 1.5961 8 1 4.0437 -2.8969 2.6201 9 6 4.9211 -4.2640 1.2354 10 7 5.2842 -4.4699 -0.0117 11 14 5.1898 -5.5951 2.5182 12 1 4.6991 -5.1185 3.8363 13 1 4.4458 -6.8186 2.1254 14 1 6.6389 -5.9058 2.6130 15 6 4.2930 0.1816 1.7330 16 6 5.6835 0.0896 1.6821 17 6 6.4316 1.1125 2.2332 18 6 5.7743 2.1968 2.8180 19 6 6.5388 3.2630 3.3918 20 7 7.1453 4.1086 3.8474 21 7 4.4470 2.2501 2.8468 22 6 3.7063 1.2944 2.3319 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6054 -1.7197 1.2952 31 1 1.7517 -0.1582 2.1370 32 1 3.4757 -2.3721 -0.2267 33 1 5.0852 -1.7019 0.1325 34 1 5.6911 -5.3131 -0.2655 35 1 6.1646 -0.7612 1.2226 36 1 7.5107 1.0738 2.2119 37 1 2.6299 1.3726 2.3736 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123642137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:30 Heat of formation + Delta-G solvation = 46.462695 kcal Electronic energy + Delta-G solvation = -19000.300806 eV Core-core repulsion = 16162.983660 eV Total energy + Delta-G solvation = -2837.317146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43655 -38.85759 -37.30581 -35.88199 -34.54651 -33.03040 -31.60321 -29.39713 -27.94655 -26.89543 -25.65736 -24.04719 -22.80079 -20.93539 -20.09852 -18.58095 -18.10783 -17.60081 -16.60723 -15.93715 -15.79806 -15.47558 -15.35409 -15.12083 -14.55961 -14.37994 -14.17772 -13.82847 -13.75213 -13.68774 -13.33294 -13.11332 -13.00045 -12.75868 -12.56479 -12.45985 -12.31929 -12.12784 -11.78711 -11.58973 -11.45833 -11.02840 -10.61228 -10.49459 -10.41767 -8.42556 -7.99682 -6.33989 -0.03779 0.42651 1.39899 1.44614 1.53555 1.60280 1.96706 2.26005 2.44924 2.80521 3.09567 3.11105 3.75286 3.92450 4.01823 4.08056 4.18639 4.23744 4.32385 4.55980 4.71009 4.76632 4.86179 4.94320 4.96848 5.09560 5.14074 5.14996 5.23322 5.32617 5.32898 5.49758 5.53566 5.56021 5.70279 6.06504 6.29104 6.45486 6.61444 6.81028 6.97781 7.37787 8.85134 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.007218 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.715440 B = 3878.054624 C = 5479.609163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.117 3.883 5 N -0.585 5.585 6 C 0.260 3.740 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.021 3.979 10 N -0.922 5.922 11 Si 0.953 3.047 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.214 3.786 16 C -0.177 4.177 17 C -0.048 4.048 18 C 0.067 3.933 19 C 0.306 3.694 20 N -0.459 5.459 21 N -0.421 5.421 22 C 0.025 3.975 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 6.939 0.072 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.201 4.201 4 C -0.006 4.006 5 N -0.285 5.285 6 C 0.139 3.861 7 C -0.578 4.578 8 H 0.073 0.927 9 C -0.179 4.179 10 N -0.562 5.562 11 Si 0.779 3.221 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.207 1.207 15 C 0.100 3.900 16 C -0.207 4.207 17 C -0.071 4.071 18 C -0.071 4.071 19 C -0.009 4.009 20 N -0.138 5.138 21 N -0.130 5.130 22 C -0.144 4.144 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.486 8.626 0.938 10.834 hybrid contribution 0.593 -2.232 -0.272 2.325 sum -5.893 6.395 0.667 8.721 Atomic orbital electron populations 1.21730 0.92829 1.02156 1.02886 1.21523 0.97157 0.96593 0.97699 1.21981 1.00258 0.95325 1.02503 1.21784 0.78528 1.01524 0.98751 1.47169 1.05404 1.18800 1.57156 1.18983 0.93090 0.81791 0.92224 1.21759 1.40313 0.99862 0.95897 0.92701 1.25614 0.95076 1.00309 0.96920 1.70012 1.42202 1.25975 1.18004 0.85578 0.77798 0.79182 0.79537 1.19451 1.20590 1.20707 1.19358 0.91787 0.88983 0.89865 1.21216 0.92374 1.01173 1.05912 1.21797 1.01846 0.90597 0.92873 1.15939 0.88931 0.93218 1.09006 1.25101 0.92161 0.91745 0.91880 1.81181 1.10616 1.10697 1.11305 1.67199 1.05229 1.27348 1.13257 1.22577 1.00472 0.89789 1.01551 0.91130 0.91742 0.92700 0.92885 0.91089 0.94311 0.92161 0.90926 0.89105 0.96274 0.95870 0.92457 0.84630 0.82280 0.80128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.11 -2.58 3.13 -10.79 -0.03 -2.61 16 3 C -0.14 -3.15 7.63 71.98 0.55 -2.60 16 4 C 0.12 3.20 4.95 86.38 0.43 3.62 16 5 N -0.59 -20.14 2.44 -701.13 -1.71 -21.85 16 6 C 0.26 11.38 4.93 85.63 0.42 11.80 16 7 C -0.54 -26.34 9.39 25.60 0.24 -26.10 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.02 1.05 5.46 84.66 0.46 1.52 16 10 N -0.92 -49.31 13.29 21.45 0.28 -49.03 16 11 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.21 6.96 5.39 38.52 0.21 7.17 16 16 C -0.18 -5.83 9.28 22.55 0.21 -5.62 16 17 C -0.05 -1.36 9.78 22.60 0.22 -1.14 16 18 C 0.07 2.02 6.59 40.57 0.27 2.29 16 19 C 0.31 9.46 15.53 88.33 1.37 10.83 16 20 N -0.46 -15.31 18.54 19.00 0.35 -14.96 16 21 N -0.42 -12.87 10.26 -188.46 -1.93 -14.80 16 22 C 0.03 0.72 8.32 85.02 0.71 1.42 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.34 6.66 -2.39 -0.02 1.33 16 28 H 0.04 1.02 5.86 -2.39 -0.01 1.00 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.09 2.07 6.21 -2.39 -0.01 2.06 16 32 H 0.02 0.91 8.07 -2.38 -0.02 0.89 16 33 H 0.02 1.09 6.23 -2.39 -0.01 1.07 16 34 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 35 H 0.14 4.97 6.25 -2.91 -0.02 4.95 16 36 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.18 4.25 4.39 -2.91 -0.01 4.24 16 Total: -1.00 -55.48 311.59 5.81 -49.67 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.08 Total: 9.63 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.71 Total: -1.23 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -3.01 Total: -100.64 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -55.48 5.81 -49.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123642137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.136 kcal (2) G-P(sol) polarization free energy of solvation -55.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds