Wall clock time and date at job start Mon Mar 30 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47329 * 2 1 4 4 C 1.53006 * 109.46974 * 120.00233 * 2 1 3 5 5 N 1.46894 * 109.47140 * 65.52983 * 4 2 1 6 6 C 1.46905 * 110.99970 * 199.64022 * 5 4 2 7 7 C 1.50704 * 109.46764 * 66.04207 * 6 5 4 8 8 H 1.08000 * 120.00231 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99892 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46817 * 60.00358 * 11 9 7 13 13 H 1.48496 * 109.47193 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47206 * 300.00543 * 11 9 7 15 15 C 1.39067 * 111.00412 * 75.68596 * 5 4 2 16 16 C 1.39049 * 120.60460 * 59.01791 * 15 5 4 17 17 N 1.31646 * 120.77475 * 180.31376 * 16 15 5 18 18 C 1.31958 * 122.18494 * 359.71332 * 17 16 15 19 19 C 1.37901 * 121.12387 * 359.97438 * 18 17 16 20 20 C 1.40026 * 119.07838 * 0.02562 * 19 18 17 21 21 C 1.43201 * 120.97849 * 180.02562 * 20 19 18 22 22 N 4.27820 * 59.72178 * 199.18112 * 2 1 3 23 23 H 1.09004 * 109.47260 * 299.99754 * 1 2 3 24 24 H 1.08998 * 109.47619 * 59.99475 * 1 2 3 25 25 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46743 * 240.00236 * 2 1 3 27 27 H 1.08994 * 109.46954 * 175.05451 * 3 2 1 28 28 H 1.09000 * 109.47352 * 295.05852 * 3 2 1 29 29 H 1.09004 * 109.46756 * 55.05720 * 3 2 1 30 30 H 1.08990 * 109.46832 * 305.52395 * 4 2 1 31 31 H 1.09002 * 109.46510 * 185.52402 * 4 2 1 32 32 H 1.08994 * 109.46901 * 186.04366 * 6 5 4 33 33 H 1.08999 * 109.47218 * 306.04637 * 6 5 4 34 34 H 0.97003 * 119.99488 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.60782 * 0.02655 * 16 15 5 36 36 H 1.08000 * 119.43799 * 180.02562 * 18 17 16 37 37 H 1.07992 * 120.46386 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6623 -2.1394 1.1843 6 6 1.7054 -2.7572 2.5165 7 6 0.6422 -2.1425 3.3899 8 1 -0.0015 -1.3705 2.9948 9 6 0.4905 -2.5665 4.6930 10 7 1.2740 -3.5070 5.1740 11 14 -0.8269 -1.8042 5.7759 12 1 -2.1618 -2.0327 5.1666 13 1 -0.7834 -2.4287 7.1224 14 1 -0.5826 -0.3446 5.8996 15 6 2.4710 -2.8301 0.2883 16 6 3.8494 -2.8724 0.4662 17 7 4.6187 -3.5201 -0.3834 18 6 4.1290 -4.1582 -1.4295 19 6 2.7736 -4.1763 -1.6831 20 6 1.9091 -3.5033 -0.8111 21 6 0.4947 -3.4961 -1.0354 22 7 -0.6271 -3.4895 -1.2139 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 3.1263 1.4437 0.0886 28 1 1.7508 1.9302 -0.9309 29 1 1.6062 1.9812 0.8424 30 1 1.5981 -0.2678 2.1364 31 1 3.1255 -0.6364 1.3000 32 1 1.5268 -3.8286 2.4260 33 1 2.6851 -2.5887 2.9636 34 1 1.1674 -3.8050 6.0909 35 1 4.2945 -2.3641 1.3087 36 1 4.8011 -4.6757 -2.0979 37 1 2.3844 -4.7023 -2.5422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124995074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:40 Heat of formation + Delta-G solvation = 62.221576 kcal Electronic energy + Delta-G solvation = -19415.620788 eV Core-core repulsion = 16578.986998 eV Total energy + Delta-G solvation = -2836.633790 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45144 -37.47006 -36.22382 -34.38252 -32.77426 -32.22820 -29.87332 -27.12879 -26.75576 -25.28289 -24.44690 -23.08863 -20.97981 -19.63710 -19.09455 -16.78006 -16.31033 -15.66071 -15.31764 -14.96598 -14.51057 -14.16418 -13.99964 -13.67258 -13.37485 -12.95425 -12.83247 -12.62681 -12.37081 -12.31629 -11.92089 -11.83464 -11.57645 -11.27315 -10.93116 -10.85380 -10.58067 -10.42697 -10.13830 -10.09346 -9.77225 -9.50953 -9.42450 -8.67676 -8.54589 -7.62241 -6.13748 -4.16153 0.84473 1.17656 3.01969 3.28139 3.32307 3.32869 3.35841 4.03023 4.09080 4.21758 4.42199 4.63063 5.00799 5.09989 5.17655 5.22322 5.29964 5.37979 5.61409 5.66381 5.80935 5.84605 5.96353 6.04199 6.13180 6.22410 6.31845 6.35165 6.46404 6.62110 6.75140 6.86180 7.05124 7.09625 7.65552 7.78517 7.83273 7.96419 8.02126 8.35005 8.89710 9.48497 10.96718 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.007370 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.983599 B = 3798.087229 C = 4259.256954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.144 4.144 4 C 0.068 3.932 5 N -0.509 5.509 6 C 0.202 3.798 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.899 3.101 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.121 3.879 16 C 0.074 3.926 17 N -0.462 5.462 18 C 0.078 3.922 19 C -0.125 4.125 20 C 0.021 3.979 21 C 0.273 3.727 22 N -0.408 5.408 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.032 0.968 33 H 0.003 0.997 34 H 0.264 0.736 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 3.141 -11.898 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.058 4.058 5 N -0.231 5.231 6 C 0.080 3.920 7 C -0.551 4.551 8 H 0.084 0.916 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.726 3.274 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.201 1.201 15 C 0.021 3.979 16 C -0.087 4.087 17 N -0.171 5.171 18 C -0.078 4.078 19 C -0.147 4.147 20 C 0.009 3.991 21 C -0.043 4.043 22 N -0.083 5.083 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.282 3.006 -11.999 13.090 hybrid contribution -0.394 0.282 0.997 1.108 sum 3.889 3.288 -11.002 12.124 Atomic orbital electron populations 1.21703 0.94674 1.02777 1.00177 1.21111 0.96792 0.95144 0.98052 1.21796 1.00592 0.96354 1.01425 1.22269 0.97407 0.87050 0.99118 1.59648 1.49647 1.02066 1.11747 1.19852 0.96915 0.95039 0.80228 1.21025 1.16996 1.21604 0.95441 0.91554 1.24956 0.96292 0.95080 0.97933 1.69939 1.38447 1.28837 1.16109 0.86546 0.82118 0.79355 0.79366 1.20136 1.21266 1.20135 1.20155 0.91574 0.93655 0.92544 1.23503 0.90600 0.96761 0.97837 1.67437 1.40708 1.06159 1.02775 1.22553 0.92678 0.97364 0.95176 1.22127 0.94318 0.98892 0.99408 1.16408 0.85848 1.00731 0.96156 1.25044 0.92173 0.93808 0.93282 1.81141 1.11253 1.07573 1.08353 0.92871 0.94383 0.91446 0.92468 0.93039 0.93131 0.92517 0.88365 0.95034 0.94978 0.97915 0.92665 0.82153 0.82238 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.08 37.16 0.34 -1.88 16 2 C -0.09 -1.40 2.96 -90.62 -0.27 -1.67 16 3 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 4 C 0.07 1.18 4.11 -3.82 -0.02 1.17 16 5 N -0.51 -9.97 3.35 -172.07 -0.58 -10.55 16 6 C 0.20 4.85 4.38 -4.97 -0.02 4.83 16 7 C -0.51 -13.54 8.23 -34.44 -0.28 -13.82 16 8 H 0.07 1.74 7.31 -52.49 -0.38 1.36 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 11 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.12 2.07 3.94 -83.38 -0.33 1.74 16 16 C 0.07 1.17 9.68 -17.33 -0.17 1.01 16 17 N -0.46 -6.71 10.33 -13.15 -0.14 -6.85 16 18 C 0.08 0.91 11.16 -17.62 -0.20 0.71 16 19 C -0.12 -1.47 9.86 -39.04 -0.38 -1.86 16 20 C 0.02 0.32 5.78 -106.40 -0.62 -0.29 16 21 C 0.27 4.74 14.56 -22.47 -0.33 4.41 16 22 N -0.41 -7.74 18.54 41.84 0.78 -6.96 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.27 7.37 -51.93 -0.38 0.89 16 26 H 0.06 0.88 7.59 -51.93 -0.39 0.48 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.91 6.58 -51.93 -0.34 1.57 16 31 H 0.03 0.51 6.66 -51.93 -0.35 0.16 16 32 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 33 H 0.00 0.08 7.75 -51.93 -0.40 -0.33 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.16 2.51 7.17 -52.49 -0.38 2.14 16 36 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -29.22 318.38 -6.59 -35.81 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.14 Total: -1.96 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.03 Total: -5.61 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.80 Total: -49.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.22 -6.59 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124995074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.035 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds