Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47329 * 2 1 4 4 C 1.53006 * 109.46974 * 120.00233 * 2 1 3 5 5 N 1.46894 * 109.47140 * 65.52983 * 4 2 1 6 6 C 1.46905 * 110.99970 * 199.64022 * 5 4 2 7 7 C 1.50704 * 109.46764 * 66.04207 * 6 5 4 8 8 H 1.08000 * 120.00231 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99892 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46817 * 60.00358 * 11 9 7 13 13 H 1.48496 * 109.47193 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47206 * 300.00543 * 11 9 7 15 15 C 1.39067 * 111.00412 * 75.68596 * 5 4 2 16 16 C 1.39049 * 120.60460 * 59.01791 * 15 5 4 17 17 N 1.31646 * 120.77475 * 180.31376 * 16 15 5 18 18 C 1.31958 * 122.18494 * 359.71332 * 17 16 15 19 19 C 1.37901 * 121.12387 * 359.97438 * 18 17 16 20 20 C 1.40026 * 119.07838 * 0.02562 * 19 18 17 21 21 C 1.43201 * 120.97849 * 180.02562 * 20 19 18 22 22 N 4.27820 * 59.72178 * 199.18112 * 2 1 3 23 23 H 1.09004 * 109.47260 * 299.99754 * 1 2 3 24 24 H 1.08998 * 109.47619 * 59.99475 * 1 2 3 25 25 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46743 * 240.00236 * 2 1 3 27 27 H 1.08994 * 109.46954 * 175.05451 * 3 2 1 28 28 H 1.09000 * 109.47352 * 295.05852 * 3 2 1 29 29 H 1.09004 * 109.46756 * 55.05720 * 3 2 1 30 30 H 1.08990 * 109.46832 * 305.52395 * 4 2 1 31 31 H 1.09002 * 109.46510 * 185.52402 * 4 2 1 32 32 H 1.08994 * 109.46901 * 186.04366 * 6 5 4 33 33 H 1.08999 * 109.47218 * 306.04637 * 6 5 4 34 34 H 0.97003 * 119.99488 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.60782 * 0.02655 * 16 15 5 36 36 H 1.08000 * 119.43799 * 180.02562 * 18 17 16 37 37 H 1.07992 * 120.46386 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6623 -2.1394 1.1843 6 6 1.7054 -2.7572 2.5165 7 6 0.6422 -2.1425 3.3899 8 1 -0.0015 -1.3705 2.9948 9 6 0.4905 -2.5665 4.6930 10 7 1.2740 -3.5070 5.1740 11 14 -0.8269 -1.8042 5.7759 12 1 -2.1618 -2.0327 5.1666 13 1 -0.7834 -2.4287 7.1224 14 1 -0.5826 -0.3446 5.8996 15 6 2.4710 -2.8301 0.2883 16 6 3.8494 -2.8724 0.4662 17 7 4.6187 -3.5201 -0.3834 18 6 4.1290 -4.1582 -1.4295 19 6 2.7736 -4.1763 -1.6831 20 6 1.9091 -3.5033 -0.8111 21 6 0.4947 -3.4961 -1.0354 22 7 -0.6271 -3.4895 -1.2139 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 3.1263 1.4437 0.0886 28 1 1.7508 1.9302 -0.9309 29 1 1.6062 1.9812 0.8424 30 1 1.5981 -0.2678 2.1364 31 1 3.1255 -0.6364 1.3000 32 1 1.5268 -3.8286 2.4260 33 1 2.6851 -2.5887 2.9636 34 1 1.1674 -3.8050 6.0909 35 1 4.2945 -2.3641 1.3087 36 1 4.8011 -4.6757 -2.0979 37 1 2.3844 -4.7023 -2.5422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124995074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = 45.265134 kcal Electronic energy + Delta-G solvation = -19416.356074 eV Core-core repulsion = 16578.986998 eV Total energy + Delta-G solvation = -2837.369076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67556 -38.82612 -37.61280 -35.77718 -34.66770 -33.45890 -31.23716 -28.90082 -27.95747 -26.71842 -25.64585 -24.72410 -22.47760 -20.92101 -20.29631 -18.55728 -17.69101 -17.14516 -16.87264 -16.23110 -16.07336 -15.47846 -15.13260 -14.98137 -14.81485 -14.31890 -14.22443 -14.11070 -13.94544 -13.77003 -13.44370 -13.08600 -12.97638 -12.75649 -12.73645 -12.49811 -12.15202 -11.85444 -11.69221 -11.52425 -11.34956 -10.93886 -10.68181 -10.61871 -9.89219 -9.15249 -8.23534 -6.32332 -0.35443 0.06054 1.38749 1.40827 1.48435 1.65984 2.05112 2.36557 2.79260 2.87296 2.95736 3.10484 3.52784 3.87977 3.96984 4.00151 4.12134 4.20612 4.37529 4.56400 4.65979 4.73956 4.79194 4.84246 4.88130 5.01446 5.04328 5.07713 5.15411 5.19434 5.28380 5.48382 5.52394 5.56341 5.65402 6.01751 6.12794 6.45251 6.63401 6.80661 6.92664 7.36385 8.86865 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.007370 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.983599 B = 3798.087229 C = 4259.256954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.138 4.138 4 C 0.070 3.930 5 N -0.513 5.513 6 C 0.222 3.778 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.009 3.991 10 N -0.928 5.928 11 Si 0.960 3.040 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.264 1.264 15 C 0.091 3.909 16 C 0.067 3.933 17 N -0.472 5.472 18 C 0.094 3.906 19 C -0.100 4.100 20 C 0.007 3.993 21 C 0.286 3.714 22 N -0.444 5.444 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.042 0.958 32 H -0.002 1.002 33 H -0.015 1.015 34 H 0.265 0.735 35 H 0.152 0.848 36 H 0.209 0.791 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 3.447 -13.915 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.056 4.056 5 N -0.234 5.234 6 C 0.098 3.902 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.568 5.568 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.009 4.009 16 C -0.092 4.092 17 N -0.181 5.181 18 C -0.062 4.062 19 C -0.123 4.123 20 C -0.005 4.005 21 C -0.030 4.030 22 N -0.120 5.120 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.002 0.998 34 H 0.074 0.926 35 H 0.169 0.831 36 H 0.226 0.774 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.119 3.337 -14.025 15.298 hybrid contribution -0.565 0.106 1.486 1.593 sum 4.555 3.443 -12.539 13.777 Atomic orbital electron populations 1.21647 0.95598 1.00958 1.00703 1.21036 0.95848 0.96610 0.96662 1.21750 1.01173 0.94288 1.02355 1.22263 0.97899 0.86087 0.99364 1.59453 1.51211 1.03048 1.09727 1.19367 0.95133 0.93069 0.82603 1.21326 1.17233 1.21296 0.96057 0.91979 1.25766 0.98317 0.95533 0.99359 1.70054 1.40105 1.30201 1.16460 0.85574 0.79229 0.79087 0.77589 1.20217 1.20765 1.18896 1.20141 0.91969 0.95518 0.93225 1.23280 0.90017 0.97602 0.98338 1.67501 1.40692 1.06425 1.03482 1.23395 0.93358 0.95367 0.94117 1.22590 0.93827 0.96735 0.99114 1.16631 0.85329 1.01657 0.96927 1.25382 0.92551 0.92771 0.92266 1.81138 1.12257 1.08916 1.09691 0.93674 0.92446 0.94389 0.92169 0.92008 0.91306 0.92658 0.90974 0.94009 0.98419 0.99764 0.92634 0.83085 0.77418 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.08 71.98 0.65 -3.64 16 2 C -0.08 -2.46 2.96 -10.79 -0.03 -2.49 16 3 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 4 C 0.07 2.50 4.11 86.31 0.35 2.85 16 5 N -0.51 -20.80 3.35 -698.32 -2.34 -23.14 16 6 C 0.22 11.23 4.38 85.56 0.37 11.61 16 7 C -0.52 -28.59 8.23 25.60 0.21 -28.37 16 8 H 0.06 3.39 7.31 -2.91 -0.02 3.36 16 9 C 0.01 0.51 5.46 84.65 0.46 0.97 16 10 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 11 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 15 C 0.09 3.14 3.94 38.77 0.15 3.29 16 16 C 0.07 2.11 9.68 84.92 0.82 2.93 16 17 N -0.47 -12.66 10.33 -195.50 -2.02 -14.68 16 18 C 0.09 1.78 11.16 84.59 0.94 2.73 16 19 C -0.10 -1.99 9.86 22.62 0.22 -1.77 16 20 C 0.01 0.20 5.78 -21.02 -0.12 0.08 16 21 C 0.29 9.82 14.56 88.33 1.29 11.11 16 22 N -0.44 -16.93 18.54 19.00 0.35 -16.58 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.45 7.37 -2.39 -0.02 1.43 16 26 H 0.06 1.77 7.59 -2.39 -0.02 1.75 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 2.92 6.58 -2.39 -0.02 2.91 16 31 H 0.04 1.38 6.66 -2.39 -0.02 1.36 16 32 H 0.00 -0.13 8.06 -2.39 -0.02 -0.15 16 33 H -0.02 -0.81 7.75 -2.39 -0.02 -0.83 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.15 4.91 7.17 -2.91 -0.02 4.89 16 36 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -66.12 318.38 5.36 -60.76 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.06 Total: 5.09 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.99 Total: -3.29 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -3.72 Total: -108.67 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.12 5.36 -60.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124995074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.025 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds