Wall clock time and date at job start Mon Mar 30 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46841 * 2 1 4 4 C 1.46506 * 119.99878 * 270.00149 * 3 2 1 5 5 C 1.53001 * 109.46772 * 270.00075 * 4 3 2 6 6 C 1.47203 * 109.47096 * 179.97438 * 5 4 3 7 7 N 5.65198 * 117.52545 * 307.63772 * 2 1 3 8 8 C 1.39848 * 120.00512 * 90.00065 * 3 2 1 9 9 C 1.39605 * 119.84475 * 180.25197 * 8 3 2 10 10 C 1.38058 * 120.54745 * 180.30511 * 9 8 3 11 11 C 1.38730 * 120.22346 * 359.44029 * 10 9 8 12 12 N 1.38868 * 120.16583 * 180.25451 * 11 10 9 13 13 C 1.41559 * 119.67387 * 0.28068 * 11 10 9 14 14 C 1.41027 * 120.27119 * 180.02562 * 13 11 10 15 15 H 1.08007 * 119.99697 * 330.45131 * 14 13 11 16 16 C 1.39888 * 120.00293 * 150.44473 * 14 13 11 17 17 N 1.30896 * 119.99747 * 162.54662 * 16 14 13 18 18 Si 1.86797 * 119.99938 * 342.54689 * 16 14 13 19 19 H 1.48504 * 109.46823 * 90.67777 * 18 16 14 20 20 H 1.48494 * 109.46999 * 210.67306 * 18 16 14 21 21 H 1.48494 * 109.47064 * 330.67766 * 18 16 14 22 22 C 1.38010 * 119.83884 * 359.97438 * 8 3 2 23 23 H 1.08996 * 109.47017 * 299.99533 * 1 2 3 24 24 H 1.08996 * 109.47292 * 60.00488 * 1 2 3 25 25 H 1.09001 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47589 * 239.99979 * 2 1 3 27 27 H 1.08996 * 109.47292 * 119.99512 * 2 1 3 28 28 H 1.08998 * 109.46820 * 29.99368 * 4 3 2 29 29 H 1.08999 * 109.47019 * 149.99984 * 4 3 2 30 30 H 1.08999 * 109.47379 * 299.99396 * 5 4 3 31 31 H 1.08999 * 109.47422 * 60.00156 * 5 4 3 32 32 H 1.08000 * 119.72027 * 0.03961 * 9 8 3 33 33 H 1.08005 * 119.88312 * 179.71896 * 10 9 8 34 34 H 0.97005 * 119.99393 * 353.99751 * 12 11 10 35 35 H 0.96999 * 120.00055 * 173.99089 * 12 11 10 36 36 H 0.97003 * 120.00170 * 180.02562 * 17 16 14 37 37 H 1.08008 * 120.11326 * 0.02562 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7104 6 6 3.9526 2.5248 -2.9856 7 7 4.1420 3.0608 -3.9691 8 6 2.2514 2.0406 1.2111 9 6 2.7117 3.3586 1.2072 10 6 2.9525 4.0212 2.3941 11 6 2.7279 3.3858 3.6067 12 7 2.9656 4.0552 4.7999 13 6 2.2557 2.0514 3.6217 14 6 2.0225 1.3935 4.8471 15 1 2.6039 1.6543 5.7192 16 6 1.0382 0.4032 4.9333 17 7 1.0409 -0.4366 5.9373 18 14 -0.2799 0.2794 3.6154 19 1 0.1781 -0.6390 2.5421 20 1 -1.5321 -0.2464 4.2158 21 1 -0.5332 1.6250 3.0409 22 6 2.0198 1.3871 2.4044 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.5817 1.6876 -2.0284 29 1 2.0954 3.1411 -1.1385 30 1 4.3882 2.2157 -0.9509 31 1 3.8744 0.7623 -1.8408 32 1 2.8847 3.8625 0.2677 33 1 3.3128 5.0393 2.3786 34 1 3.3710 4.9364 4.7892 35 1 2.7261 3.6417 5.6441 36 1 0.3586 -1.1235 5.9969 37 1 1.6599 0.3688 2.4036 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127309810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:23 Heat of formation + Delta-G solvation = 53.746088 kcal Electronic energy + Delta-G solvation = -19217.376020 eV Core-core repulsion = 16380.374705 eV Total energy + Delta-G solvation = -2837.001315 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.81696 -37.06791 -36.16429 -33.47782 -32.74104 -32.33681 -30.26027 -29.29332 -26.67409 -24.91798 -23.80849 -22.10721 -21.11220 -19.10181 -17.62720 -17.29852 -16.76317 -15.91162 -15.32664 -14.95148 -14.67132 -14.33347 -14.05632 -13.99096 -13.10381 -12.79408 -12.68425 -12.59929 -12.28999 -12.26296 -12.07894 -11.69039 -11.56821 -11.43273 -11.22097 -10.92945 -10.87729 -10.52331 -10.34618 -9.97619 -9.72157 -9.51744 -8.98103 -7.90713 -7.56082 -6.83653 -5.86740 -4.24206 2.70101 2.71915 2.78359 2.97946 3.15056 3.32419 3.39063 3.60132 4.06129 4.24860 4.63744 5.00029 5.13960 5.25115 5.30642 5.45404 5.51339 5.67682 5.71782 5.78092 5.97151 6.00922 6.05421 6.27341 6.35931 6.50580 6.72805 6.77772 7.00959 7.24850 7.36001 7.47496 7.54613 7.65425 7.91668 8.20158 8.27159 8.51796 8.55230 8.85319 9.03270 9.10271 10.18671 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.007303 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.773260 B = 3833.299310 C = 4889.752013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.124 3.876 3 N -0.636 5.636 4 C 0.141 3.859 5 C -0.053 4.053 6 C 0.217 3.783 7 N -0.452 5.452 8 C 0.196 3.804 9 C -0.256 4.256 10 C -0.143 4.143 11 C 0.099 3.901 12 N -0.886 5.886 13 C 0.080 3.920 14 C -0.450 4.450 15 H 0.086 0.914 16 C 0.082 3.918 17 N -0.821 5.821 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.301 1.301 21 H -0.249 1.249 22 C -0.274 4.274 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.377 0.623 35 H 0.393 0.607 36 H 0.281 0.719 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 0.660 -8.413 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.001 3.999 3 N -0.351 5.351 4 C 0.014 3.986 5 C -0.095 4.095 6 C -0.101 4.101 7 N -0.129 5.129 8 C 0.099 3.901 9 C -0.280 4.280 10 C -0.168 4.168 11 C -0.002 4.002 12 N -0.428 5.428 13 C 0.074 3.926 14 C -0.480 4.480 15 H 0.104 0.896 16 C -0.134 4.134 17 N -0.446 5.446 18 Si 0.742 3.258 19 H -0.188 1.188 20 H -0.230 1.230 21 H -0.173 1.173 22 C -0.298 4.298 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.202 0.798 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.320 1.123 -9.846 9.915 hybrid contribution -0.608 -0.244 0.269 0.708 sum -0.288 0.879 -9.577 9.621 Atomic orbital electron populations 1.22391 0.97663 1.01223 1.02241 1.21230 0.93329 0.83388 1.01981 1.46225 1.73883 1.12675 1.02303 1.20990 0.91941 0.99019 0.86639 1.20005 1.01923 1.00253 0.87303 1.29300 0.92917 0.93337 0.94557 1.81197 1.09143 1.10134 1.12448 1.17325 0.97242 0.91411 0.84103 1.19666 1.17718 0.94315 0.96265 1.19796 1.07626 0.98093 0.91266 1.17783 1.04988 0.91748 0.85728 1.41885 1.73909 1.20853 1.06154 1.17173 0.93260 0.89311 0.92837 1.19120 1.17053 1.15391 0.96408 0.89589 1.26102 0.98679 0.92642 0.96021 1.69732 1.31993 1.12697 1.30206 0.86429 0.78496 0.80825 0.80023 1.18835 1.22956 1.17281 1.20399 1.18757 1.00010 0.90648 0.92170 0.93004 0.92546 0.91886 0.90457 0.91270 0.90064 0.86656 0.87591 0.88856 0.89149 0.79794 0.77847 0.90848 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.44 37.16 0.35 -2.21 16 2 C 0.12 1.80 5.87 -4.04 -0.02 1.77 16 3 N -0.64 -9.88 2.61 -171.75 -0.45 -10.33 16 4 C 0.14 1.69 5.12 -4.04 -0.02 1.67 16 5 C -0.05 -0.54 6.03 -29.52 -0.18 -0.71 16 6 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 7 N -0.45 -6.58 18.54 42.15 0.78 -5.80 16 8 C 0.20 3.84 6.55 -83.77 -0.55 3.29 16 9 C -0.26 -4.90 9.21 -39.14 -0.36 -5.26 16 10 C -0.14 -2.87 9.87 -39.47 -0.39 -3.26 16 11 C 0.10 2.18 6.79 -83.23 -0.56 1.61 16 12 N -0.89 -16.82 8.97 32.75 0.29 -16.52 16 13 C 0.08 1.92 5.13 -106.66 -0.55 1.38 16 14 C -0.45 -11.63 8.89 -37.91 -0.34 -11.96 16 15 H 0.09 2.31 7.08 -52.48 -0.37 1.94 16 16 C 0.08 2.11 5.41 -17.33 -0.09 2.01 16 17 N -0.82 -21.56 13.93 55.55 0.77 -20.78 16 18 Si 0.91 20.44 22.31 -169.99 -3.79 16.65 16 19 H -0.26 -5.39 5.34 56.52 0.30 -5.09 16 20 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.25 -5.84 7.01 56.52 0.40 -5.44 16 22 C -0.27 -6.16 6.39 -38.75 -0.25 -6.40 16 23 H 0.06 1.05 5.33 -51.93 -0.28 0.77 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 27 H 0.08 1.27 6.13 -51.93 -0.32 0.95 16 28 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 30 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.55 6.10 -52.49 -0.32 1.23 16 33 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.38 5.94 8.84 -40.82 -0.36 5.58 16 35 H 0.39 7.58 7.18 -40.82 -0.29 7.29 16 36 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.11 2.41 2.54 -52.48 -0.13 2.28 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -28.36 300.38 -5.73 -34.10 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.59 Total: 13.98 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -3.28 Total: -15.82 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 1.40 Total: -53.44 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -3.79 Total: 16.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.36 -5.73 -34.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127309810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.843 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds