Wall clock time and date at job start Mon Mar 30 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46841 * 2 1 4 4 C 1.46506 * 119.99878 * 270.00149 * 3 2 1 5 5 C 1.53001 * 109.46772 * 270.00075 * 4 3 2 6 6 C 1.47203 * 109.47096 * 179.97438 * 5 4 3 7 7 N 5.65198 * 117.52545 * 307.63772 * 2 1 3 8 8 C 1.39848 * 120.00512 * 90.00065 * 3 2 1 9 9 C 1.39605 * 119.84475 * 180.25197 * 8 3 2 10 10 C 1.38058 * 120.54745 * 180.30511 * 9 8 3 11 11 C 1.38730 * 120.22346 * 359.44029 * 10 9 8 12 12 N 1.38868 * 120.16583 * 180.25451 * 11 10 9 13 13 C 1.41559 * 119.67387 * 0.28068 * 11 10 9 14 14 C 1.41027 * 120.27119 * 180.02562 * 13 11 10 15 15 H 1.08007 * 119.99697 * 330.45131 * 14 13 11 16 16 C 1.39888 * 120.00293 * 150.44473 * 14 13 11 17 17 N 1.30896 * 119.99747 * 162.54662 * 16 14 13 18 18 Si 1.86797 * 119.99938 * 342.54689 * 16 14 13 19 19 H 1.48504 * 109.46823 * 90.67777 * 18 16 14 20 20 H 1.48494 * 109.46999 * 210.67306 * 18 16 14 21 21 H 1.48494 * 109.47064 * 330.67766 * 18 16 14 22 22 C 1.38010 * 119.83884 * 359.97438 * 8 3 2 23 23 H 1.08996 * 109.47017 * 299.99533 * 1 2 3 24 24 H 1.08996 * 109.47292 * 60.00488 * 1 2 3 25 25 H 1.09001 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47589 * 239.99979 * 2 1 3 27 27 H 1.08996 * 109.47292 * 119.99512 * 2 1 3 28 28 H 1.08998 * 109.46820 * 29.99368 * 4 3 2 29 29 H 1.08999 * 109.47019 * 149.99984 * 4 3 2 30 30 H 1.08999 * 109.47379 * 299.99396 * 5 4 3 31 31 H 1.08999 * 109.47422 * 60.00156 * 5 4 3 32 32 H 1.08000 * 119.72027 * 0.03961 * 9 8 3 33 33 H 1.08005 * 119.88312 * 179.71896 * 10 9 8 34 34 H 0.97005 * 119.99393 * 353.99751 * 12 11 10 35 35 H 0.96999 * 120.00055 * 173.99089 * 12 11 10 36 36 H 0.97003 * 120.00170 * 180.02562 * 17 16 14 37 37 H 1.08008 * 120.11326 * 0.02562 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7104 6 6 3.9526 2.5248 -2.9856 7 7 4.1420 3.0608 -3.9691 8 6 2.2514 2.0406 1.2111 9 6 2.7117 3.3586 1.2072 10 6 2.9525 4.0212 2.3941 11 6 2.7279 3.3858 3.6067 12 7 2.9656 4.0552 4.7999 13 6 2.2557 2.0514 3.6217 14 6 2.0225 1.3935 4.8471 15 1 2.6039 1.6543 5.7192 16 6 1.0382 0.4032 4.9333 17 7 1.0409 -0.4366 5.9373 18 14 -0.2799 0.2794 3.6154 19 1 0.1781 -0.6390 2.5421 20 1 -1.5321 -0.2464 4.2158 21 1 -0.5332 1.6250 3.0409 22 6 2.0198 1.3871 2.4044 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.5817 1.6876 -2.0284 29 1 2.0954 3.1411 -1.1385 30 1 4.3882 2.2157 -0.9509 31 1 3.8744 0.7623 -1.8408 32 1 2.8847 3.8625 0.2677 33 1 3.3128 5.0393 2.3786 34 1 3.3710 4.9364 4.7892 35 1 2.7261 3.6417 5.6441 36 1 0.3586 -1.1235 5.9969 37 1 1.6599 0.3688 2.4036 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127309810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:23 Heat of formation + Delta-G solvation = 35.582943 kcal Electronic energy + Delta-G solvation = -19218.163633 eV Core-core repulsion = 16380.374705 eV Total energy + Delta-G solvation = -2837.788928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26989 -38.31366 -37.34147 -35.28383 -34.19283 -33.44126 -31.92188 -30.57272 -28.13218 -26.55381 -24.98774 -23.49207 -22.64959 -20.58824 -19.08022 -18.44373 -18.28501 -17.42986 -16.73816 -16.47373 -15.91838 -15.58226 -15.46392 -15.10609 -14.68013 -14.19793 -13.96208 -13.83723 -13.66578 -13.61361 -13.45720 -13.01203 -12.90758 -12.72741 -12.61424 -12.47051 -12.23238 -11.88740 -11.65376 -11.59075 -11.25741 -11.24774 -10.69399 -9.30522 -9.28471 -8.70871 -7.40437 -6.09488 1.00143 1.26819 1.33845 1.58215 1.59310 1.79421 1.86989 2.23949 2.47067 2.83028 3.29370 3.73729 3.79569 4.12306 4.22305 4.24702 4.49998 4.54907 4.63561 4.67370 4.77496 4.88971 4.95381 5.02099 5.10244 5.18751 5.22678 5.40493 5.44771 5.55188 5.76028 5.88295 6.04248 6.26814 6.42238 6.64014 6.70383 6.90031 6.99132 7.05589 7.36390 7.62359 8.36927 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.007303 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.773260 B = 3833.299310 C = 4889.752013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.118 3.882 3 N -0.633 5.633 4 C 0.137 3.863 5 C -0.041 4.041 6 C 0.245 3.755 7 N -0.499 5.499 8 C 0.194 3.806 9 C -0.239 4.239 10 C -0.144 4.144 11 C 0.080 3.920 12 N -0.881 5.881 13 C 0.047 3.953 14 C -0.476 4.476 15 H 0.056 0.944 16 C 0.044 3.956 17 N -0.868 5.868 18 Si 0.966 3.034 19 H -0.238 1.238 20 H -0.302 1.302 21 H -0.268 1.268 22 C -0.279 4.279 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.393 0.607 35 H 0.389 0.611 36 H 0.285 0.715 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 1.141 -11.871 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.005 4.005 3 N -0.347 5.347 4 C 0.012 3.988 5 C -0.082 4.082 6 C -0.072 4.072 7 N -0.177 5.177 8 C 0.095 3.905 9 C -0.263 4.263 10 C -0.169 4.169 11 C -0.023 4.023 12 N -0.424 5.424 13 C 0.041 3.959 14 C -0.507 4.507 15 H 0.074 0.926 16 C -0.168 4.168 17 N -0.497 5.497 18 Si 0.792 3.208 19 H -0.162 1.162 20 H -0.230 1.230 21 H -0.192 1.192 22 C -0.302 4.302 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.221 0.779 35 H 0.216 0.784 36 H 0.095 0.905 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.490 1.615 -13.347 13.453 hybrid contribution -0.552 -0.232 1.149 1.295 sum -0.062 1.383 -12.198 12.277 Atomic orbital electron populations 1.22400 0.97663 1.02091 1.01496 1.21397 0.93355 0.82801 1.02920 1.46333 1.73178 1.13133 1.02034 1.21187 0.93565 0.98646 0.85436 1.19968 1.00545 1.01589 0.86128 1.29447 0.91533 0.92106 0.94146 1.81249 1.10644 1.11773 1.14078 1.17381 0.96367 0.91753 0.84987 1.20131 1.14826 0.93976 0.97350 1.20200 1.06587 0.99317 0.90779 1.18037 1.05397 0.91544 0.87317 1.41822 1.73796 1.21419 1.05344 1.17354 0.95137 0.90592 0.92789 1.19106 1.18037 1.17032 0.96550 0.92559 1.26693 0.99983 0.92449 0.97642 1.69783 1.33455 1.14219 1.32233 0.85667 0.76422 0.80100 0.78579 1.16235 1.23008 1.19242 1.20521 1.18278 1.00022 0.91411 0.95511 0.91046 0.91009 0.87554 0.92910 0.88728 0.90422 0.86661 0.85036 0.85546 0.86459 0.77945 0.78371 0.90519 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 9.44 71.98 0.68 -3.85 16 2 C 0.12 2.95 5.87 86.38 0.51 3.46 16 3 N -0.63 -17.04 2.61 -697.30 -1.82 -18.86 16 4 C 0.14 2.56 5.12 86.38 0.44 3.00 16 5 C -0.04 -0.62 6.03 28.79 0.17 -0.44 16 6 C 0.24 4.85 15.43 89.44 1.38 6.23 16 7 N -0.50 -13.11 18.54 20.01 0.37 -12.74 16 8 C 0.19 7.06 6.55 38.14 0.25 7.31 16 9 C -0.24 -8.25 9.21 22.56 0.21 -8.04 16 10 C -0.14 -5.40 9.87 22.34 0.22 -5.18 16 11 C 0.08 3.46 6.79 38.96 0.26 3.72 16 12 N -0.88 -33.58 8.97 -50.31 -0.45 -34.03 16 13 C 0.05 2.29 5.13 -21.18 -0.11 2.18 16 14 C -0.48 -25.89 8.89 23.35 0.21 -25.69 16 15 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 16 C 0.04 2.33 5.41 85.23 0.46 2.79 16 17 N -0.87 -48.06 13.93 21.82 0.30 -47.75 16 18 Si 0.97 43.39 22.31 68.60 1.53 44.92 16 19 H -0.24 -9.50 5.34 99.48 0.53 -8.97 16 20 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.62 7.01 99.48 0.70 -11.92 16 22 C -0.28 -12.30 6.39 22.81 0.15 -12.15 16 23 H 0.03 0.85 5.33 -2.39 -0.01 0.84 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.11 1.76 8.07 -2.39 -0.02 1.74 16 27 H 0.05 1.60 6.13 -2.39 -0.01 1.58 16 28 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 29 H 0.08 1.55 6.17 -2.39 -0.01 1.54 16 30 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 3.53 6.10 -2.91 -0.02 3.51 16 33 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.39 12.04 8.84 -92.70 -0.82 11.22 16 35 H 0.39 15.64 7.18 -92.71 -0.67 14.98 16 36 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 37 H 0.10 4.55 2.54 -2.91 -0.01 4.54 16 Total: -1.00 -64.55 300.38 4.22 -60.34 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.55 Total: 34.80 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.83 Total: -26.66 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -1.60 Total: -113.39 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.53 Total: 44.92 kcal Total: -64.55 4.22 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127309810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.918 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds