Wall clock time and date at job start Mon Mar 30 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47175 * 2 1 4 4 C 1.35881 * 116.99838 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.22541 * 359.97299 * 4 3 2 6 6 C 1.38745 * 120.31460 * 180.02562 * 5 4 3 7 7 C 1.37757 * 120.72163 * 359.97438 * 6 5 4 8 8 C 1.39185 * 120.02573 * 0.04760 * 7 6 5 9 9 C 1.40019 * 120.22084 * 180.02562 * 4 3 2 10 10 C 1.46493 * 133.98086 * 359.97438 * 9 4 3 11 11 C 1.34209 * 106.98747 * 179.73708 * 10 9 4 12 12 N 1.36931 * 109.89690 * 0.39879 * 11 10 9 13 13 C 1.46505 * 125.06836 * 179.85200 * 12 11 10 14 14 C 1.52997 * 109.47212 * 264.69584 * 13 12 11 15 15 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 H 1.08998 * 109.46846 * 300.00484 * 1 2 3 24 24 H 1.09001 * 109.46982 * 60.00170 * 1 2 3 25 25 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47158 * 239.99823 * 2 1 3 27 27 H 1.09001 * 109.46982 * 119.99830 * 2 1 3 28 28 H 1.07997 * 119.83841 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.63831 * 180.02562 * 6 5 4 30 30 H 1.08000 * 119.99112 * 180.02562 * 7 6 5 31 31 H 1.07999 * 126.50598 * 359.97438 * 10 9 4 32 32 H 1.07997 * 125.05352 * 180.26416 * 11 10 9 33 33 H 1.09002 * 109.47068 * 24.69644 * 13 12 11 34 34 H 1.09001 * 109.47372 * 144.69731 * 13 12 11 35 35 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 36 36 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 37 37 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 4.1994 0.4328 -0.0005 6 6 5.5752 0.6124 -0.0005 7 6 6.1197 1.8778 -0.0011 8 6 5.2881 2.9939 -0.0007 9 6 3.8937 2.8171 0.0000 10 6 3.3137 4.1623 0.0006 11 6 4.3370 5.0305 0.0068 12 7 5.5254 4.3503 0.0012 13 6 6.8516 4.9727 0.0023 14 6 7.3676 5.0763 -1.4343 15 6 8.7316 5.7171 -1.4333 16 1 9.1852 6.0198 -0.5011 17 6 9.4008 5.9160 -2.6222 18 7 8.8485 5.5469 -3.7573 19 14 11.0912 6.7110 -2.6210 20 1 11.4861 7.0319 -1.2259 21 1 12.0796 5.7733 -3.2115 22 1 11.0517 7.9592 -3.4243 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7877 -0.5656 -0.0005 29 1 6.2263 -0.2492 -0.0009 30 1 7.1923 2.0039 -0.0015 31 1 2.2621 4.4085 0.0004 32 1 4.2380 6.1059 0.0128 33 1 6.7846 5.9700 0.4371 34 1 7.5379 4.3647 0.5919 35 1 7.4347 4.0790 -1.8691 36 1 6.6815 5.6842 -2.0239 37 1 9.3195 5.6865 -4.5937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128746059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:25 Heat of formation + Delta-G solvation = 7.838900 kcal Electronic energy + Delta-G solvation = -18515.899783 eV Core-core repulsion = 15644.615032 eV Total energy + Delta-G solvation = -2871.284751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92307 -38.99704 -35.93883 -33.95807 -32.32833 -31.62143 -29.50568 -28.71570 -27.77071 -24.90646 -23.61115 -22.07924 -21.49895 -20.79625 -19.74433 -17.40664 -16.60363 -16.18677 -16.02706 -15.67549 -14.83788 -14.70028 -14.43183 -14.04145 -13.30449 -13.06423 -12.97183 -12.66455 -12.44263 -12.24693 -12.20273 -11.95569 -11.58741 -11.18403 -11.05016 -10.99136 -10.70089 -10.66545 -10.49237 -10.15888 -9.83662 -9.33848 -8.70282 -8.49013 -7.80158 -6.93098 -6.12686 -4.18470 1.58997 1.98143 3.18506 3.23955 3.24761 3.31922 3.35097 3.57842 4.25314 4.36181 4.84747 4.90513 5.06750 5.16588 5.23179 5.26763 5.33001 5.37583 5.55409 5.66589 5.67833 5.74728 5.91169 5.93563 6.10390 6.16689 6.28493 6.42243 6.52367 6.61998 6.87142 6.96231 7.19160 7.44109 7.47261 7.65091 7.75388 7.81868 7.93192 8.20533 8.87917 9.46870 10.98215 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.037590 B = 0.004071 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.692055 B = 6876.908919 C = 7144.784047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.314 6.314 4 C 0.171 3.829 5 C -0.253 4.253 6 C -0.071 4.071 7 C -0.154 4.154 8 C 0.138 3.862 9 C -0.139 4.139 10 C -0.203 4.203 11 C 0.051 3.949 12 N -0.467 5.467 13 C 0.108 3.892 14 C 0.011 3.989 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -9.163 8.318 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.126 3.874 5 C -0.273 4.273 6 C -0.091 4.091 7 C -0.174 4.174 8 C 0.029 3.971 9 C -0.145 4.145 10 C -0.227 4.227 11 C -0.076 4.076 12 N -0.147 5.147 13 C -0.011 4.011 14 C -0.027 4.027 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.182 0.818 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.196 -8.811 8.132 17.103 hybrid contribution 1.088 0.229 -0.264 1.143 sum -11.108 -8.582 7.869 16.092 Atomic orbital electron populations 1.21763 0.93148 1.02475 1.03430 1.22709 0.95467 0.82637 1.01253 1.86037 1.19643 1.28519 1.88557 1.18245 0.81464 0.92088 0.95633 1.20741 0.94143 0.96934 1.15455 1.20420 0.93944 0.95909 0.98787 1.20013 0.99051 0.90074 1.08311 1.17959 0.92972 0.84582 1.01623 1.18334 0.92261 0.91419 1.12446 1.21414 0.98092 0.89852 1.13375 1.21819 0.83955 0.97928 1.03869 1.44566 1.07289 1.03526 1.59315 1.22284 0.79025 0.97165 1.02665 1.19454 0.96224 0.98277 0.88696 1.21057 1.01734 1.40763 0.93152 0.92277 1.25012 0.98186 0.95467 0.95501 1.69990 1.38122 1.46763 0.97787 0.86469 0.83868 0.79086 0.78197 1.19623 1.20861 1.20871 0.91657 0.91587 0.90690 0.92207 0.92290 0.86186 0.86009 0.85984 0.84120 0.81815 0.90258 0.90708 0.95775 0.95912 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.58 5.46 37.16 0.20 0.79 16 3 O -0.31 -4.74 10.15 -19.37 -0.20 -4.93 16 4 C 0.17 2.89 6.72 -38.94 -0.26 2.63 16 5 C -0.25 -3.81 9.04 -39.42 -0.36 -4.17 16 6 C -0.07 -1.10 10.01 -39.57 -0.40 -1.50 16 7 C -0.15 -2.77 9.98 -39.41 -0.39 -3.16 16 8 C 0.14 2.70 6.81 -84.01 -0.57 2.13 16 9 C -0.14 -2.61 6.32 -105.03 -0.66 -3.27 16 10 C -0.20 -3.49 11.08 -37.68 -0.42 -3.91 16 11 C 0.05 0.88 11.28 -16.69 -0.19 0.69 16 12 N -0.47 -9.08 2.78 -114.42 -0.32 -9.39 16 13 C 0.11 2.19 5.94 -4.04 -0.02 2.17 16 14 C 0.01 0.28 5.30 -27.89 -0.15 0.13 16 15 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.59 7.67 -51.93 -0.40 0.20 16 27 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 28 H 0.12 1.46 6.29 -52.49 -0.33 1.13 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.16 2.32 8.06 -52.49 -0.42 1.89 16 33 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -31.38 316.71 -8.59 -39.97 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.32 Total: 0.57 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.25 Total: -21.41 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.42 Total: -35.02 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.38 -8.59 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128746059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.804 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds