Wall clock time and date at job start Mon Mar 30 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47175 * 2 1 4 4 C 1.35881 * 116.99838 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.22541 * 359.97299 * 4 3 2 6 6 C 1.38745 * 120.31460 * 180.02562 * 5 4 3 7 7 C 1.37757 * 120.72163 * 359.97438 * 6 5 4 8 8 C 1.39185 * 120.02573 * 0.04760 * 7 6 5 9 9 C 1.40019 * 120.22084 * 180.02562 * 4 3 2 10 10 C 1.46493 * 133.98086 * 359.97438 * 9 4 3 11 11 C 1.34209 * 106.98747 * 179.73708 * 10 9 4 12 12 N 1.36931 * 109.89690 * 0.39879 * 11 10 9 13 13 C 1.46505 * 125.06836 * 179.85200 * 12 11 10 14 14 C 1.52997 * 109.47212 * 264.69584 * 13 12 11 15 15 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 H 1.08998 * 109.46846 * 300.00484 * 1 2 3 24 24 H 1.09001 * 109.46982 * 60.00170 * 1 2 3 25 25 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47158 * 239.99823 * 2 1 3 27 27 H 1.09001 * 109.46982 * 119.99830 * 2 1 3 28 28 H 1.07997 * 119.83841 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.63831 * 180.02562 * 6 5 4 30 30 H 1.08000 * 119.99112 * 180.02562 * 7 6 5 31 31 H 1.07999 * 126.50598 * 359.97438 * 10 9 4 32 32 H 1.07997 * 125.05352 * 180.26416 * 11 10 9 33 33 H 1.09002 * 109.47068 * 24.69644 * 13 12 11 34 34 H 1.09001 * 109.47372 * 144.69731 * 13 12 11 35 35 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 36 36 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 37 37 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 4.1994 0.4328 -0.0005 6 6 5.5752 0.6124 -0.0005 7 6 6.1197 1.8778 -0.0011 8 6 5.2881 2.9939 -0.0007 9 6 3.8937 2.8171 0.0000 10 6 3.3137 4.1623 0.0006 11 6 4.3370 5.0305 0.0068 12 7 5.5254 4.3503 0.0012 13 6 6.8516 4.9727 0.0023 14 6 7.3676 5.0763 -1.4343 15 6 8.7316 5.7171 -1.4333 16 1 9.1852 6.0198 -0.5011 17 6 9.4008 5.9160 -2.6222 18 7 8.8485 5.5469 -3.7573 19 14 11.0912 6.7110 -2.6210 20 1 11.4861 7.0319 -1.2259 21 1 12.0796 5.7733 -3.2115 22 1 11.0517 7.9592 -3.4243 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7877 -0.5656 -0.0005 29 1 6.2263 -0.2492 -0.0009 30 1 7.1923 2.0039 -0.0015 31 1 2.2621 4.4085 0.0004 32 1 4.2380 6.1059 0.0128 33 1 6.7846 5.9700 0.4371 34 1 7.5379 4.3647 0.5919 35 1 7.4347 4.0790 -1.8691 36 1 6.6815 5.6842 -2.0239 37 1 9.3195 5.6865 -4.5937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128746059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:25 Heat of formation + Delta-G solvation = -8.720863 kcal Electronic energy + Delta-G solvation = -18516.617868 eV Core-core repulsion = 15644.615032 eV Total energy + Delta-G solvation = -2872.002836 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25708 -40.15410 -37.21675 -35.82525 -33.97404 -32.66338 -30.95280 -30.16253 -29.15155 -26.69307 -24.69141 -23.37899 -23.17922 -22.09547 -21.04680 -18.96674 -18.22502 -17.66346 -16.99411 -16.97721 -16.62893 -16.15957 -15.66205 -15.47199 -14.92292 -14.46145 -14.19443 -13.94159 -13.80906 -13.51431 -13.32198 -13.28032 -12.96739 -12.87495 -12.62051 -12.26587 -12.24248 -12.02250 -11.80422 -11.67835 -11.55226 -11.39786 -10.64573 -10.05170 -9.15964 -8.30787 -8.21656 -6.40292 0.28664 0.67042 1.40040 1.40250 1.53726 1.83824 1.97883 2.36402 2.42585 2.93740 3.07962 3.83240 3.94817 3.99534 4.09514 4.11814 4.26450 4.30821 4.40697 4.46433 4.49156 4.60251 4.70841 4.80052 4.87109 4.98889 4.99187 5.14752 5.23533 5.35205 5.38899 5.42463 5.59086 5.68005 5.73602 5.88152 6.04735 6.28329 6.47658 6.60501 6.76735 7.30620 8.86002 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.037590 B = 0.004071 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.692055 B = 6876.908919 C = 7144.784047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.165 3.835 5 C -0.249 4.249 6 C -0.061 4.061 7 C -0.184 4.184 8 C 0.110 3.890 9 C -0.168 4.168 10 C -0.206 4.206 11 C 0.039 3.961 12 N -0.482 5.482 13 C 0.125 3.875 14 C 0.023 3.977 15 C -0.543 4.543 16 H 0.072 0.928 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.971 3.029 20 H -0.256 1.256 21 H -0.280 1.280 22 H -0.279 1.279 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.114 0.886 31 H 0.161 0.839 32 H 0.191 0.809 33 H 0.099 0.901 34 H 0.080 0.920 35 H -0.013 1.013 36 H -0.008 1.008 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 -10.009 9.386 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.119 3.881 5 C -0.268 4.268 6 C -0.081 4.081 7 C -0.205 4.205 8 C 0.002 3.998 9 C -0.173 4.173 10 C -0.230 4.230 11 C -0.086 4.086 12 N -0.163 5.163 13 C 0.005 3.995 14 C -0.015 4.015 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.795 3.205 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.204 1.204 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.133 0.867 31 H 0.179 0.821 32 H 0.208 0.792 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.005 0.995 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.479 -9.670 9.223 18.283 hybrid contribution 1.032 0.351 -0.608 1.248 sum -11.447 -9.318 8.615 17.090 Atomic orbital electron populations 1.21799 0.91357 1.04194 1.03063 1.23101 0.96936 0.80799 1.02337 1.86029 1.18559 1.31412 1.88211 1.18419 0.82660 0.91916 0.95144 1.21135 0.93753 0.98095 1.13857 1.20838 0.94813 0.95884 0.96518 1.20204 0.98806 0.91054 1.10458 1.18363 0.93968 0.84933 1.02582 1.18732 0.92282 0.92926 1.13363 1.21729 0.99050 0.89447 1.12787 1.22323 0.83279 0.99280 1.03715 1.44535 1.07267 1.03880 1.60611 1.21923 0.79946 0.98542 0.99094 1.19237 0.95534 0.95268 0.91480 1.21516 1.02462 1.40355 0.93764 0.90938 1.26024 1.02625 0.96003 0.95047 1.70139 1.40157 1.48314 0.98606 0.85300 0.78350 0.77891 0.78910 1.17974 1.20566 1.20434 0.91828 0.92170 0.87892 0.91328 0.90835 0.82775 0.82797 0.86749 0.82141 0.79214 0.88251 0.90138 0.99454 0.98963 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.80 5.46 71.98 0.39 1.20 16 3 O -0.33 -9.46 10.15 -92.21 -0.94 -10.40 16 4 C 0.16 5.42 6.72 22.68 0.15 5.57 16 5 C -0.25 -7.02 9.04 22.37 0.20 -6.82 16 6 C -0.06 -1.82 10.01 22.28 0.22 -1.60 16 7 C -0.18 -6.76 9.98 22.38 0.22 -6.54 16 8 C 0.11 4.40 6.81 39.02 0.27 4.67 16 9 C -0.17 -6.33 6.32 -20.13 -0.13 -6.46 16 10 C -0.21 -7.09 11.08 23.50 0.26 -6.83 16 11 C 0.04 1.35 11.28 82.98 0.94 2.29 16 12 N -0.48 -19.15 2.78 -515.90 -1.43 -20.58 16 13 C 0.13 5.16 5.94 86.38 0.51 5.68 16 14 C 0.02 1.19 5.30 29.85 0.16 1.35 16 15 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 19 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 1.17 7.67 -2.38 -0.02 1.15 16 27 H 0.07 1.17 7.67 -2.39 -0.02 1.16 16 28 H 0.15 3.20 6.29 -2.91 -0.02 3.18 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.16 4.68 8.06 -2.91 -0.02 4.65 16 32 H 0.19 5.26 8.06 -2.91 -0.02 5.23 16 33 H 0.10 3.64 8.12 -2.39 -0.02 3.62 16 34 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 35 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -69.51 316.71 5.62 -63.89 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.04 Total: 16.22 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 4.64 Total: -37.90 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.15 Total: -77.09 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.94 Total: -10.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -69.51 5.62 -63.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128746059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.167 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds