Wall clock time and date at job start Mon Mar 30 2020 06:09:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 O 1.42902 * 109.47175 * 2 1
4 4 C 1.35881 * 116.99838 * 180.02562 * 3 2 1
5 5 C 1.38167 * 120.22541 * 359.97299 * 4 3 2
6 6 C 1.38745 * 120.31460 * 180.02562 * 5 4 3
7 7 C 1.37757 * 120.72163 * 359.97438 * 6 5 4
8 8 C 1.39185 * 120.02573 * 0.04760 * 7 6 5
9 9 C 1.40019 * 120.22084 * 180.02562 * 4 3 2
10 10 C 1.46493 * 133.98086 * 359.97438 * 9 4 3
11 11 C 1.34209 * 106.98747 * 179.73708 * 10 9 4
12 12 N 1.36931 * 109.89690 * 0.39879 * 11 10 9
13 13 C 1.46505 * 125.06836 * 179.85200 * 12 11 10
14 14 C 1.52997 * 109.47212 * 264.69584 * 13 12 11
15 15 C 1.50697 * 109.47466 * 179.97438 * 14 13 12
16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13
18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14
20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15
21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15
22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15
23 23 H 1.08998 * 109.46846 * 300.00484 * 1 2 3
24 24 H 1.09001 * 109.46982 * 60.00170 * 1 2 3
25 25 H 1.08995 * 109.47173 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47158 * 239.99823 * 2 1 3
27 27 H 1.09001 * 109.46982 * 119.99830 * 2 1 3
28 28 H 1.07997 * 119.83841 * 0.02562 * 5 4 3
29 29 H 1.08001 * 119.63831 * 180.02562 * 6 5 4
30 30 H 1.08000 * 119.99112 * 180.02562 * 7 6 5
31 31 H 1.07999 * 126.50598 * 359.97438 * 10 9 4
32 32 H 1.07997 * 125.05352 * 180.26416 * 11 10 9
33 33 H 1.09002 * 109.47068 * 24.69644 * 13 12 11
34 34 H 1.09001 * 109.47372 * 144.69731 * 13 12 11
35 35 H 1.09002 * 109.47153 * 300.00008 * 14 13 12
36 36 H 1.08998 * 109.47533 * 59.99637 * 14 13 12
37 37 H 0.97002 * 119.99731 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3535 1.5253 -0.0005
5 6 4.1994 0.4328 -0.0005
6 6 5.5752 0.6124 -0.0005
7 6 6.1197 1.8778 -0.0011
8 6 5.2881 2.9939 -0.0007
9 6 3.8937 2.8171 0.0000
10 6 3.3137 4.1623 0.0006
11 6 4.3370 5.0305 0.0068
12 7 5.5254 4.3503 0.0012
13 6 6.8516 4.9727 0.0023
14 6 7.3676 5.0763 -1.4343
15 6 8.7316 5.7171 -1.4333
16 1 9.1852 6.0198 -0.5011
17 6 9.4008 5.9160 -2.6222
18 7 8.8485 5.5469 -3.7573
19 14 11.0912 6.7110 -2.6210
20 1 11.4861 7.0319 -1.2259
21 1 12.0796 5.7733 -3.2115
22 1 11.0517 7.9592 -3.4243
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 1.8934 -0.5139 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 3.7877 -0.5656 -0.0005
29 1 6.2263 -0.2492 -0.0009
30 1 7.1923 2.0039 -0.0015
31 1 2.2621 4.4085 0.0004
32 1 4.2380 6.1059 0.0128
33 1 6.7846 5.9700 0.4371
34 1 7.5379 4.3647 0.5919
35 1 7.4347 4.0790 -1.8691
36 1 6.6815 5.6842 -2.0239
37 1 9.3195 5.6865 -4.5937
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000128746059.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:09:25
Heat of formation + Delta-G solvation = -8.720863 kcal
Electronic energy + Delta-G solvation = -18516.617868 eV
Core-core repulsion = 15644.615032 eV
Total energy + Delta-G solvation = -2872.002836 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.131 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.25708 -40.15410 -37.21675 -35.82525 -33.97404 -32.66338 -30.95280 -30.16253
-29.15155 -26.69307 -24.69141 -23.37899 -23.17922 -22.09547 -21.04680 -18.96674
-18.22502 -17.66346 -16.99411 -16.97721 -16.62893 -16.15957 -15.66205 -15.47199
-14.92292 -14.46145 -14.19443 -13.94159 -13.80906 -13.51431 -13.32198 -13.28032
-12.96739 -12.87495 -12.62051 -12.26587 -12.24248 -12.02250 -11.80422 -11.67835
-11.55226 -11.39786 -10.64573 -10.05170 -9.15964 -8.30787 -8.21656 -6.40292
0.28664 0.67042 1.40040 1.40250 1.53726 1.83824 1.97883 2.36402
2.42585 2.93740 3.07962 3.83240 3.94817 3.99534 4.09514 4.11814
4.26450 4.30821 4.40697 4.46433 4.49156 4.60251 4.70841 4.80052
4.87109 4.98889 4.99187 5.14752 5.23533 5.35205 5.38899 5.42463
5.59086 5.68005 5.73602 5.88152 6.04735 6.28329 6.47658 6.60501
6.76735 7.30620 8.86002
Molecular weight = 259.13amu
Principal moments of inertia in cm(-1)
A = 0.037590 B = 0.004071 C = 0.003918
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 744.692055 B = 6876.908919 C = 7144.784047
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.043 3.957
3 O -0.328 6.328
4 C 0.165 3.835
5 C -0.249 4.249
6 C -0.061 4.061
7 C -0.184 4.184
8 C 0.110 3.890
9 C -0.168 4.168
10 C -0.206 4.206
11 C 0.039 3.961
12 N -0.482 5.482
13 C 0.125 3.875
14 C 0.023 3.977
15 C -0.543 4.543
16 H 0.072 0.928
17 C 0.001 3.999
18 N -0.933 5.933
19 Si 0.971 3.029
20 H -0.256 1.256
21 H -0.280 1.280
22 H -0.279 1.279
23 H 0.063 0.937
24 H 0.059 0.941
25 H 0.103 0.897
26 H 0.068 0.932
27 H 0.073 0.927
28 H 0.155 0.845
29 H 0.154 0.846
30 H 0.114 0.886
31 H 0.161 0.839
32 H 0.191 0.809
33 H 0.099 0.901
34 H 0.080 0.920
35 H -0.013 1.013
36 H -0.008 1.008
37 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.636 -10.009 9.386 18.653
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.032 4.032
3 O -0.242 6.242
4 C 0.119 3.881
5 C -0.268 4.268
6 C -0.081 4.081
7 C -0.205 4.205
8 C 0.002 3.998
9 C -0.173 4.173
10 C -0.230 4.230
11 C -0.086 4.086
12 N -0.163 5.163
13 C 0.005 3.995
14 C -0.015 4.015
15 C -0.581 4.581
16 H 0.091 0.909
17 C -0.197 4.197
18 N -0.572 5.572
19 Si 0.795 3.205
20 H -0.180 1.180
21 H -0.206 1.206
22 H -0.204 1.204
23 H 0.082 0.918
24 H 0.078 0.922
25 H 0.121 0.879
26 H 0.087 0.913
27 H 0.092 0.908
28 H 0.172 0.828
29 H 0.172 0.828
30 H 0.133 0.867
31 H 0.179 0.821
32 H 0.208 0.792
33 H 0.117 0.883
34 H 0.099 0.901
35 H 0.005 0.995
36 H 0.010 0.990
37 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -12.479 -9.670 9.223 18.283
hybrid contribution 1.032 0.351 -0.608 1.248
sum -11.447 -9.318 8.615 17.090
Atomic orbital electron populations
1.21799 0.91357 1.04194 1.03063 1.23101 0.96936 0.80799 1.02337
1.86029 1.18559 1.31412 1.88211 1.18419 0.82660 0.91916 0.95144
1.21135 0.93753 0.98095 1.13857 1.20838 0.94813 0.95884 0.96518
1.20204 0.98806 0.91054 1.10458 1.18363 0.93968 0.84933 1.02582
1.18732 0.92282 0.92926 1.13363 1.21729 0.99050 0.89447 1.12787
1.22323 0.83279 0.99280 1.03715 1.44535 1.07267 1.03880 1.60611
1.21923 0.79946 0.98542 0.99094 1.19237 0.95534 0.95268 0.91480
1.21516 1.02462 1.40355 0.93764 0.90938 1.26024 1.02625 0.96003
0.95047 1.70139 1.40157 1.48314 0.98606 0.85300 0.78350 0.77891
0.78910 1.17974 1.20566 1.20434 0.91828 0.92170 0.87892 0.91328
0.90835 0.82775 0.82797 0.86749 0.82141 0.79214 0.88251 0.90138
0.99454 0.98963 0.92664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16
2 C 0.04 0.80 5.46 71.98 0.39 1.20 16
3 O -0.33 -9.46 10.15 -92.21 -0.94 -10.40 16
4 C 0.16 5.42 6.72 22.68 0.15 5.57 16
5 C -0.25 -7.02 9.04 22.37 0.20 -6.82 16
6 C -0.06 -1.82 10.01 22.28 0.22 -1.60 16
7 C -0.18 -6.76 9.98 22.38 0.22 -6.54 16
8 C 0.11 4.40 6.81 39.02 0.27 4.67 16
9 C -0.17 -6.33 6.32 -20.13 -0.13 -6.46 16
10 C -0.21 -7.09 11.08 23.50 0.26 -6.83 16
11 C 0.04 1.35 11.28 82.98 0.94 2.29 16
12 N -0.48 -19.15 2.78 -515.90 -1.43 -20.58 16
13 C 0.13 5.16 5.94 86.38 0.51 5.68 16
14 C 0.02 1.19 5.30 29.85 0.16 1.35 16
15 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16
16 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16
17 C 0.00 0.08 5.46 84.65 0.46 0.54 16
18 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16
19 Si 0.97 43.25 29.54 68.60 2.03 45.27 16
20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16
21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
26 H 0.07 1.17 7.67 -2.38 -0.02 1.15 16
27 H 0.07 1.17 7.67 -2.39 -0.02 1.16 16
28 H 0.15 3.20 6.29 -2.91 -0.02 3.18 16
29 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16
30 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16
31 H 0.16 4.68 8.06 -2.91 -0.02 4.65 16
32 H 0.19 5.26 8.06 -2.91 -0.02 5.23 16
33 H 0.10 3.64 8.12 -2.39 -0.02 3.62 16
34 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16
35 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16
36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16
37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16
Total: -1.00 -69.51 316.71 5.62 -63.89
By element:
Atomic # 1 Polarization: 15.18 SS G_CDS: 1.04 Total: 16.22 kcal
Atomic # 6 Polarization: -42.53 SS G_CDS: 4.64 Total: -37.90 kcal
Atomic # 7 Polarization: -75.94 SS G_CDS: -1.15 Total: -77.09 kcal
Atomic # 8 Polarization: -9.46 SS G_CDS: -0.94 Total: -10.40 kcal
Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal
Total: -69.51 5.62 -63.89 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000128746059.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.167 kcal
(2) G-P(sol) polarization free energy of solvation -69.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds