Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35881 * 116.99838 * 2 1 4 4 C 1.38167 * 120.22541 * 359.97299 * 3 2 1 5 5 C 1.38745 * 120.31460 * 180.02562 * 4 3 2 6 6 C 1.37757 * 120.72163 * 359.97438 * 5 4 3 7 7 C 1.39185 * 120.02573 * 0.04760 * 6 5 4 8 8 C 1.40019 * 120.22084 * 180.02562 * 3 2 1 9 9 C 1.46493 * 133.98086 * 359.97438 * 8 3 2 10 10 C 1.34209 * 106.98747 * 179.73708 * 9 8 3 11 11 N 1.36931 * 109.89690 * 0.39879 * 10 9 8 12 12 C 1.46505 * 125.06836 * 179.85200 * 11 10 9 13 13 C 1.52997 * 109.47212 * 264.69584 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00113 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47375 * 89.99678 * 19 17 15 21 21 H 1.48508 * 109.47196 * 209.99673 * 19 17 15 22 22 H 1.48504 * 109.47051 * 329.99297 * 19 17 15 23 23 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47222 * 300.00362 * 1 2 3 25 25 H 1.09001 * 109.47027 * 60.00422 * 1 2 3 26 26 H 1.07997 * 119.83841 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.63831 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.99112 * 180.02562 * 6 5 4 29 29 H 1.07999 * 126.50598 * 359.97438 * 9 8 3 30 30 H 1.07997 * 125.05352 * 180.26416 * 10 9 8 31 31 H 1.09002 * 109.47068 * 24.69644 * 12 11 10 32 32 H 1.09001 * 109.47372 * 144.69731 * 12 11 10 33 33 H 1.09002 * 109.47153 * 300.00008 * 13 12 11 34 34 H 1.08998 * 109.47533 * 59.99637 * 13 12 11 35 35 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 36 36 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 37 37 H 0.97008 * 120.00167 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2979 2.3724 -0.0006 5 6 1.9258 3.6096 -0.0011 6 6 3.3003 3.7012 -0.0006 7 6 4.0754 2.5451 -0.0004 8 6 3.4439 1.2894 -0.0005 9 6 4.5188 0.2942 -0.0007 10 6 5.6785 0.9696 -0.0072 11 7 5.4333 2.3167 -0.0022 12 6 6.4622 3.3596 -0.0038 13 6 6.7319 3.8122 1.4326 14 6 7.8068 4.9009 1.4310 15 6 8.0720 5.3471 2.8458 16 1 7.5285 4.8987 3.6643 17 6 9.0092 6.3270 3.0954 18 7 9.2403 6.7168 4.3300 19 14 9.9499 7.1021 1.6798 20 1 9.2070 8.2876 1.1820 21 1 11.2945 7.5221 2.1500 22 1 10.0962 6.1127 0.5821 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2193 2.3171 -0.0006 27 1 1.3305 4.5107 -0.0011 28 1 3.7768 4.6705 -0.0006 29 1 4.4004 -0.7793 0.0000 30 1 6.6594 0.5178 -0.0131 31 1 7.3801 2.9638 -0.4384 32 1 6.1178 4.2090 -0.5937 33 1 5.8140 4.2081 1.8672 34 1 7.0763 2.9629 2.0226 35 1 8.7246 4.5046 0.9966 36 1 7.4628 5.7504 0.8410 37 1 9.9000 7.4060 4.5057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128750101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = -6.064143 kcal Electronic energy + Delta-G solvation = -18417.602149 eV Core-core repulsion = 15545.714517 eV Total energy + Delta-G solvation = -2871.887632 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29305 -40.07867 -37.24091 -36.28828 -34.48697 -32.48615 -30.52044 -30.04601 -28.30908 -27.87475 -24.90291 -23.34028 -22.56614 -22.06503 -21.11296 -19.10948 -18.39905 -17.79493 -17.03182 -16.64664 -16.41273 -16.25579 -15.81143 -15.62635 -15.56117 -14.75301 -14.31281 -13.94385 -13.87269 -13.60358 -13.29204 -13.14888 -13.06809 -12.62433 -12.55451 -12.33592 -11.89522 -11.84930 -11.81985 -11.68337 -11.58176 -11.38718 -10.78313 -10.09063 -9.18249 -8.31259 -8.28125 -6.36630 0.27082 0.64103 1.37290 1.39449 1.51144 1.81146 1.91569 2.35854 2.48216 2.91959 3.04746 3.81027 3.83311 3.94597 4.11077 4.13915 4.28219 4.34942 4.41934 4.44602 4.48979 4.55514 4.68497 4.75849 4.78491 4.88416 4.95407 4.98758 5.13128 5.36700 5.41246 5.48458 5.58545 5.62324 5.68609 5.84242 6.21874 6.24433 6.43990 6.56840 6.71835 7.28088 8.86534 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.036221 B = 0.003947 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.840730 B = 7092.722759 C = 7354.048677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.159 3.841 4 C -0.248 4.248 5 C -0.063 4.063 6 C -0.182 4.182 7 C 0.112 3.888 8 C -0.168 4.168 9 C -0.207 4.207 10 C 0.044 3.956 11 N -0.483 5.483 12 C 0.115 3.885 13 C -0.105 4.105 14 C -0.006 4.006 15 C -0.538 4.538 16 H 0.022 0.978 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.237 1.237 23 H 0.119 0.881 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.158 0.842 30 H 0.197 0.803 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.997 -11.421 -14.378 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.112 3.888 4 C -0.268 4.268 5 C -0.082 4.082 6 C -0.203 4.203 7 C 0.004 3.996 8 C -0.173 4.173 9 C -0.232 4.232 10 C -0.081 4.081 11 N -0.164 5.164 12 C -0.006 4.006 13 C -0.144 4.144 14 C -0.044 4.044 15 C -0.576 4.576 16 H 0.041 0.959 17 C -0.196 4.196 18 N -0.595 5.595 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.160 1.160 23 H 0.137 0.863 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.141 0.859 29 H 0.175 0.825 30 H 0.213 0.787 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.541 -11.306 -14.284 23.309 hybrid contribution 0.340 0.698 0.394 0.871 sum -14.200 -10.609 -13.889 22.519 Atomic orbital electron populations 1.23344 0.76474 1.05458 1.02286 1.86020 1.23399 1.26866 1.88282 1.18537 0.89820 0.85093 0.95302 1.21165 1.00782 0.91320 1.13552 1.20866 0.92837 0.98099 0.96441 1.20223 0.94097 0.95742 1.10273 1.18297 0.83738 0.94932 1.02604 1.18761 0.91396 0.94038 1.13138 1.21769 0.89946 0.98841 1.12609 1.22350 1.00897 0.81463 1.03352 1.44344 1.03977 1.06652 1.61470 1.21986 0.90778 0.90199 0.97632 1.21653 0.98756 0.98570 0.95420 1.19440 0.95264 0.94792 0.94871 1.21466 1.21760 1.20944 0.93390 0.95910 1.26123 0.97795 0.96940 0.98732 1.70089 1.35655 1.31716 1.22027 0.85563 0.77460 0.79515 0.79514 1.19104 1.21222 1.15997 0.86322 0.91909 0.91520 0.82988 0.82966 0.85909 0.82454 0.78660 0.86887 0.88868 0.94162 0.93343 0.94917 0.95508 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.30 10.51 -92.21 -0.97 -9.27 16 3 C 0.16 4.49 6.72 22.68 0.15 4.65 16 4 C -0.25 -5.95 9.04 22.37 0.20 -5.75 16 5 C -0.06 -1.56 10.01 22.28 0.22 -1.33 16 6 C -0.18 -5.37 9.98 22.38 0.22 -5.15 16 7 C 0.11 3.62 6.81 39.02 0.27 3.88 16 8 C -0.17 -5.35 6.32 -20.13 -0.13 -5.47 16 9 C -0.21 -5.88 11.08 23.50 0.26 -5.62 16 10 C 0.04 1.17 11.28 82.98 0.94 2.10 16 11 N -0.48 -14.59 2.78 -515.90 -1.43 -16.03 16 12 C 0.11 3.33 6.00 86.38 0.52 3.85 16 13 C -0.11 -4.05 5.48 30.59 0.17 -3.88 16 14 C -0.01 -0.26 4.04 29.84 0.12 -0.14 16 15 C -0.54 -31.10 9.66 25.60 0.25 -30.86 16 16 H 0.02 1.48 7.99 -2.91 -0.02 1.45 16 17 C 0.00 0.03 5.47 84.65 0.46 0.50 16 18 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 19 Si 0.96 43.09 27.47 68.60 1.88 44.97 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 23 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 0.80 7.67 -2.38 -0.02 0.78 16 25 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 26 H 0.15 2.62 6.29 -2.91 -0.02 2.60 16 27 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 28 H 0.12 3.45 8.06 -2.91 -0.02 3.42 16 29 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.11 2.71 8.12 -2.39 -0.02 2.69 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 36 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 37 H 0.27 15.66 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -72.90 312.76 5.54 -67.36 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.99 Total: 14.86 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 4.77 Total: -41.84 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.14 Total: -76.08 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.97 Total: -9.27 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -72.90 5.54 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128750101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.297 kcal (2) G-P(sol) polarization free energy of solvation -72.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds