Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38414 * 120.81752 * 2 1 4 4 C 1.38292 * 119.50599 * 179.97438 * 3 2 1 5 5 N 1.31910 * 121.22176 * 359.74165 * 4 3 2 6 6 C 1.32360 * 121.78019 * 0.52968 * 5 4 3 7 7 N 1.38402 * 119.82681 * 179.75075 * 6 5 4 8 8 C 1.46898 * 111.00191 * 252.83140 * 7 6 5 9 9 C 1.50698 * 109.47034 * 200.64287 * 8 7 6 10 10 H 1.07996 * 119.99836 * 1.86683 * 9 8 7 11 11 C 1.37876 * 119.99741 * 181.86525 * 9 8 7 12 12 N 1.31506 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99789 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47008 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47099 * 119.99923 * 13 11 9 16 16 H 1.48507 * 109.46691 * 239.99882 * 13 11 9 17 17 C 1.46899 * 110.99870 * 16.78403 * 7 6 5 18 18 C 1.52998 * 109.47132 * 166.94183 * 17 7 6 19 19 C 1.52995 * 109.47264 * 286.94601 * 17 7 6 20 20 C 1.39921 * 120.81774 * 179.97438 * 2 1 3 21 21 C 1.43199 * 120.61015 * 0.02562 * 20 2 1 22 22 N 3.49457 * 81.58659 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47529 * 270.02378 * 1 2 3 24 24 H 1.09007 * 109.47289 * 30.02314 * 1 2 3 25 25 H 1.08999 * 109.47170 * 150.01997 * 1 2 3 26 26 H 1.08000 * 120.25087 * 359.95522 * 3 2 1 27 27 H 1.07997 * 119.38813 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46716 * 320.64510 * 8 7 6 29 29 H 1.08999 * 109.47030 * 80.64102 * 8 7 6 30 30 H 0.97001 * 120.00219 * 180.02562 * 12 11 9 31 31 H 1.09010 * 109.46921 * 46.94419 * 17 7 6 32 32 H 1.08997 * 109.47272 * 67.77077 * 18 17 7 33 33 H 1.08998 * 109.47182 * 187.77199 * 18 17 7 34 34 H 1.08998 * 109.47402 * 307.77002 * 18 17 7 35 35 H 1.08994 * 109.47728 * 59.99810 * 19 17 7 36 36 H 1.09004 * 109.47526 * 180.02562 * 19 17 7 37 37 H 1.09002 * 109.46675 * 299.99704 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1887 0.0000 4 6 3.5987 1.1571 0.0005 5 7 4.2564 0.0137 0.0061 6 6 3.6288 -1.1516 0.0011 7 7 4.3594 -2.3271 0.0021 8 6 4.2994 -2.9854 -1.3098 9 6 4.6445 -4.4442 -1.1560 10 1 4.8549 -4.8490 -0.1771 11 6 4.6915 -5.2621 -2.2649 12 7 4.4348 -4.7693 -3.4568 13 14 5.1186 -7.0707 -2.0742 14 1 5.3620 -7.3733 -0.6409 15 1 3.9919 -7.9004 -2.5714 16 1 6.3421 -7.3757 -2.8588 17 6 5.7507 -2.0818 0.4048 18 6 6.4361 -3.4153 0.7094 19 6 6.4931 -1.3743 -0.7306 20 6 2.2238 -1.2016 0.0005 21 6 1.5390 -2.4592 0.0005 22 7 0.9957 -3.4570 0.0015 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6936 2.1339 -0.0007 27 1 4.1500 2.0857 0.0010 28 1 3.2931 -2.8911 -1.7179 29 1 5.0116 -2.5129 -1.9863 30 1 4.4675 -5.3448 -4.2370 31 1 5.7657 -1.4537 1.2956 32 1 6.5446 -3.9869 -0.2123 33 1 7.4203 -3.2281 1.1388 34 1 5.8319 -3.9808 1.4187 35 1 6.0048 -0.4243 -0.9476 36 1 7.5256 -1.1926 -0.4320 37 1 6.4780 -2.0024 -1.6213 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129316904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = 81.841660 kcal Electronic energy + Delta-G solvation = -19667.861411 eV Core-core repulsion = 16832.078411 eV Total energy + Delta-G solvation = -2835.782999 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55488 -37.55537 -35.98434 -33.60449 -32.64394 -31.96682 -29.31038 -27.99603 -27.09929 -26.31360 -23.87751 -22.39631 -21.73969 -19.04634 -18.44520 -16.83026 -16.53913 -16.15325 -14.81156 -14.68406 -14.33566 -13.91479 -13.65265 -13.26177 -13.16611 -12.75037 -12.57196 -12.44094 -12.29915 -12.15820 -11.86049 -11.72221 -11.40826 -11.17964 -11.09355 -10.89348 -10.74811 -10.42028 -10.26746 -9.72616 -9.48426 -9.19455 -9.03330 -8.86872 -8.45478 -7.48079 -6.09447 -4.08178 0.97396 1.42796 3.29102 3.34744 3.37169 3.41270 3.48235 4.09189 4.29543 4.35907 4.45198 4.76554 4.78118 5.18756 5.26654 5.29652 5.50681 5.53915 5.61456 5.76698 5.89704 5.96217 6.08672 6.12216 6.30526 6.38846 6.46636 6.58033 6.70502 6.77830 6.95287 7.11267 7.27908 7.37336 7.61663 7.80516 7.99548 8.12691 8.28961 8.37308 8.94697 9.52899 11.01348 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.007665 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.626499 B = 3652.286000 C = 4440.290501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.018 3.982 3 C -0.220 4.220 4 C 0.148 3.852 5 N -0.522 5.522 6 C 0.378 3.622 7 N -0.475 5.475 8 C 0.194 3.806 9 C -0.506 4.506 10 H 0.075 0.925 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.102 3.898 18 C -0.149 4.149 19 C -0.184 4.184 20 C -0.095 4.095 21 C 0.269 3.731 22 N -0.410 5.410 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 13.271 6.298 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.008 3.992 3 C -0.241 4.241 4 C -0.012 4.012 5 N -0.237 5.237 6 C 0.143 3.857 7 N -0.192 5.192 8 C 0.072 3.928 9 C -0.545 4.545 10 H 0.093 0.907 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.005 4.005 18 C -0.206 4.206 19 C -0.242 4.242 20 C -0.104 4.104 21 C -0.046 4.046 22 N -0.085 5.085 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.260 11.232 6.444 13.145 hybrid contribution -0.103 -0.118 -0.502 0.526 sum -2.363 11.114 5.942 12.823 Atomic orbital electron populations 1.20897 0.90084 1.03634 1.03179 1.20167 0.96348 0.91202 0.91465 1.21647 0.95362 0.97831 1.09296 1.22771 0.91618 0.96004 0.90802 1.68143 1.39739 0.97854 1.17952 1.20285 0.89001 0.89271 0.87126 1.59622 1.12706 1.15099 1.31728 1.20153 0.97959 0.94469 0.80188 1.21245 1.46605 0.92436 0.94193 0.90740 1.24944 0.95494 0.98820 0.95130 1.69951 1.49236 1.35908 0.98327 0.86462 0.77930 0.84892 0.78374 1.19492 1.21005 1.20979 1.21361 0.85489 0.96477 0.97213 1.22179 0.97411 0.97079 1.03932 1.22582 0.99500 1.02094 1.00004 1.16405 0.91798 0.87737 1.14440 1.24885 0.93239 0.92424 0.94101 1.81143 1.09916 1.09104 1.08366 0.90055 0.90360 0.91016 0.84602 0.82685 0.95352 0.95279 0.92854 0.91527 0.88825 0.94356 0.92920 0.90525 0.93612 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.68 36.01 0.35 -0.94 16 2 C 0.02 0.25 5.95 -103.93 -0.62 -0.37 16 3 C -0.22 -2.47 9.79 -39.50 -0.39 -2.86 16 4 C 0.15 1.84 11.16 -17.50 -0.20 1.64 16 5 N -0.52 -8.60 6.58 -12.17 -0.08 -8.68 16 6 C 0.38 7.22 5.80 -155.09 -0.90 6.32 16 7 N -0.48 -10.25 4.00 -166.73 -0.67 -10.92 16 8 C 0.19 4.87 4.05 -4.98 -0.02 4.85 16 9 C -0.51 -13.71 6.84 -34.44 -0.24 -13.95 16 10 H 0.07 2.01 5.84 -52.49 -0.31 1.71 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 13 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C 0.10 1.97 2.56 -67.72 -0.17 1.80 16 18 C -0.15 -2.88 7.80 37.16 0.29 -2.59 16 19 C -0.18 -3.39 8.35 37.16 0.31 -3.08 16 20 C -0.10 -1.70 5.51 -106.46 -0.59 -2.29 16 21 C 0.27 5.52 11.92 -22.47 -0.27 5.26 16 22 N -0.41 -9.22 18.54 41.84 0.78 -8.44 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 25 H 0.07 0.88 7.19 -51.93 -0.37 0.50 16 26 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.03 0.79 6.43 -51.93 -0.33 0.45 16 29 H 0.03 0.78 5.27 -51.93 -0.27 0.50 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 1.22 7.74 -51.92 -0.40 0.81 16 32 H 0.09 2.06 5.70 -51.93 -0.30 1.76 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 1.04 7.69 -51.93 -0.40 0.65 16 35 H 0.08 1.39 5.74 -51.93 -0.30 1.09 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -30.78 302.67 -6.89 -37.67 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.66 Total: -0.83 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.53 Total: -4.69 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.76 Total: -53.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.78 -6.89 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129316904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.509 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds