Wall clock time and date at job start Mon Mar 30 2020 06:50:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38414 * 120.81752 * 2 1
4 4 C 1.38292 * 119.50599 * 179.97438 * 3 2 1
5 5 N 1.31910 * 121.22176 * 359.74165 * 4 3 2
6 6 C 1.32360 * 121.78019 * 0.52968 * 5 4 3
7 7 N 1.38402 * 119.82681 * 179.75075 * 6 5 4
8 8 C 1.46898 * 111.00191 * 252.83140 * 7 6 5
9 9 C 1.50698 * 109.47034 * 200.64287 * 8 7 6
10 10 H 1.07996 * 119.99836 * 1.86683 * 9 8 7
11 11 C 1.37876 * 119.99741 * 181.86525 * 9 8 7
12 12 N 1.31506 * 120.00324 * 359.97438 * 11 9 8
13 13 Si 1.86807 * 119.99789 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47008 * 359.97438 * 13 11 9
15 15 H 1.48497 * 109.47099 * 119.99923 * 13 11 9
16 16 H 1.48507 * 109.46691 * 239.99882 * 13 11 9
17 17 C 1.46899 * 110.99870 * 16.78403 * 7 6 5
18 18 C 1.52998 * 109.47132 * 166.94183 * 17 7 6
19 19 C 1.52995 * 109.47264 * 286.94601 * 17 7 6
20 20 C 1.39921 * 120.81774 * 179.97438 * 2 1 3
21 21 C 1.43199 * 120.61015 * 0.02562 * 20 2 1
22 22 N 3.49457 * 81.58659 * 179.97438 * 2 1 3
23 23 H 1.08999 * 109.47529 * 270.02378 * 1 2 3
24 24 H 1.09007 * 109.47289 * 30.02314 * 1 2 3
25 25 H 1.08999 * 109.47170 * 150.01997 * 1 2 3
26 26 H 1.08000 * 120.25087 * 359.95522 * 3 2 1
27 27 H 1.07997 * 119.38813 * 180.02562 * 4 3 2
28 28 H 1.09002 * 109.46716 * 320.64510 * 8 7 6
29 29 H 1.08999 * 109.47030 * 80.64102 * 8 7 6
30 30 H 0.97001 * 120.00219 * 180.02562 * 12 11 9
31 31 H 1.09010 * 109.46921 * 46.94419 * 17 7 6
32 32 H 1.08997 * 109.47272 * 67.77077 * 18 17 7
33 33 H 1.08998 * 109.47182 * 187.77199 * 18 17 7
34 34 H 1.08998 * 109.47402 * 307.77002 * 18 17 7
35 35 H 1.08994 * 109.47728 * 59.99810 * 19 17 7
36 36 H 1.09004 * 109.47526 * 180.02562 * 19 17 7
37 37 H 1.09002 * 109.46675 * 299.99704 * 19 17 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2161 1.1887 0.0000
4 6 3.5987 1.1571 0.0005
5 7 4.2564 0.0137 0.0061
6 6 3.6288 -1.1516 0.0011
7 7 4.3594 -2.3271 0.0021
8 6 4.2994 -2.9854 -1.3098
9 6 4.6445 -4.4442 -1.1560
10 1 4.8549 -4.8490 -0.1771
11 6 4.6915 -5.2621 -2.2649
12 7 4.4348 -4.7693 -3.4568
13 14 5.1186 -7.0707 -2.0742
14 1 5.3620 -7.3733 -0.6409
15 1 3.9919 -7.9004 -2.5714
16 1 6.3421 -7.3757 -2.8588
17 6 5.7507 -2.0818 0.4048
18 6 6.4361 -3.4153 0.7094
19 6 6.4931 -1.3743 -0.7306
20 6 2.2238 -1.2016 0.0005
21 6 1.5390 -2.4592 0.0005
22 7 0.9957 -3.4570 0.0015
23 1 -0.3634 0.0004 1.0276
24 1 -0.3634 0.8898 -0.5142
25 1 -0.3633 -0.8901 -0.5135
26 1 1.6936 2.1339 -0.0007
27 1 4.1500 2.0857 0.0010
28 1 3.2931 -2.8911 -1.7179
29 1 5.0116 -2.5129 -1.9863
30 1 4.4675 -5.3448 -4.2370
31 1 5.7657 -1.4537 1.2956
32 1 6.5446 -3.9869 -0.2123
33 1 7.4203 -3.2281 1.1388
34 1 5.8319 -3.9808 1.4187
35 1 6.0048 -0.4243 -0.9476
36 1 7.5256 -1.1926 -0.4320
37 1 6.4780 -2.0024 -1.6213
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000129316904.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:46
Heat of formation + Delta-G solvation = 81.841660 kcal
Electronic energy + Delta-G solvation = -19667.861411 eV
Core-core repulsion = 16832.078411 eV
Total energy + Delta-G solvation = -2835.782999 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 259.138 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.55488 -37.55537 -35.98434 -33.60449 -32.64394 -31.96682 -29.31038 -27.99603
-27.09929 -26.31360 -23.87751 -22.39631 -21.73969 -19.04634 -18.44520 -16.83026
-16.53913 -16.15325 -14.81156 -14.68406 -14.33566 -13.91479 -13.65265 -13.26177
-13.16611 -12.75037 -12.57196 -12.44094 -12.29915 -12.15820 -11.86049 -11.72221
-11.40826 -11.17964 -11.09355 -10.89348 -10.74811 -10.42028 -10.26746 -9.72616
-9.48426 -9.19455 -9.03330 -8.86872 -8.45478 -7.48079 -6.09447 -4.08178
0.97396 1.42796 3.29102 3.34744 3.37169 3.41270 3.48235 4.09189
4.29543 4.35907 4.45198 4.76554 4.78118 5.18756 5.26654 5.29652
5.50681 5.53915 5.61456 5.76698 5.89704 5.96217 6.08672 6.12216
6.30526 6.38846 6.46636 6.58033 6.70502 6.77830 6.95287 7.11267
7.27908 7.37336 7.61663 7.80516 7.99548 8.12691 8.28961 8.37308
8.94697 9.52899 11.01348
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.021117 B = 0.007665 C = 0.006304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.626499 B = 3652.286000 C = 4440.290501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.018 3.982
3 C -0.220 4.220
4 C 0.148 3.852
5 N -0.522 5.522
6 C 0.378 3.622
7 N -0.475 5.475
8 C 0.194 3.806
9 C -0.506 4.506
10 H 0.075 0.925
11 C 0.058 3.942
12 N -0.895 5.895
13 Si 0.896 3.104
14 H -0.270 1.270
15 H -0.284 1.284
16 H -0.284 1.284
17 C 0.102 3.898
18 C -0.149 4.149
19 C -0.184 4.184
20 C -0.095 4.095
21 C 0.269 3.731
22 N -0.410 5.410
23 H 0.081 0.919
24 H 0.078 0.922
25 H 0.071 0.929
26 H 0.136 0.864
27 H 0.156 0.844
28 H 0.028 0.972
29 H 0.030 0.970
30 H 0.262 0.738
31 H 0.066 0.934
32 H 0.093 0.907
33 H 0.037 0.963
34 H 0.052 0.948
35 H 0.076 0.924
36 H 0.045 0.955
37 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.156 13.271 6.298 14.847
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.008 3.992
3 C -0.241 4.241
4 C -0.012 4.012
5 N -0.237 5.237
6 C 0.143 3.857
7 N -0.192 5.192
8 C 0.072 3.928
9 C -0.545 4.545
10 H 0.093 0.907
11 C -0.144 4.144
12 N -0.534 5.534
13 Si 0.723 3.277
14 H -0.195 1.195
15 H -0.210 1.210
16 H -0.210 1.210
17 C -0.005 4.005
18 C -0.206 4.206
19 C -0.242 4.242
20 C -0.104 4.104
21 C -0.046 4.046
22 N -0.085 5.085
23 H 0.099 0.901
24 H 0.096 0.904
25 H 0.090 0.910
26 H 0.154 0.846
27 H 0.173 0.827
28 H 0.046 0.954
29 H 0.047 0.953
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.112 0.888
33 H 0.056 0.944
34 H 0.071 0.929
35 H 0.095 0.905
36 H 0.064 0.936
37 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -2.260 11.232 6.444 13.145
hybrid contribution -0.103 -0.118 -0.502 0.526
sum -2.363 11.114 5.942 12.823
Atomic orbital electron populations
1.20897 0.90084 1.03634 1.03179 1.20167 0.96348 0.91202 0.91465
1.21647 0.95362 0.97831 1.09296 1.22771 0.91618 0.96004 0.90802
1.68143 1.39739 0.97854 1.17952 1.20285 0.89001 0.89271 0.87126
1.59622 1.12706 1.15099 1.31728 1.20153 0.97959 0.94469 0.80188
1.21245 1.46605 0.92436 0.94193 0.90740 1.24944 0.95494 0.98820
0.95130 1.69951 1.49236 1.35908 0.98327 0.86462 0.77930 0.84892
0.78374 1.19492 1.21005 1.20979 1.21361 0.85489 0.96477 0.97213
1.22179 0.97411 0.97079 1.03932 1.22582 0.99500 1.02094 1.00004
1.16405 0.91798 0.87737 1.14440 1.24885 0.93239 0.92424 0.94101
1.81143 1.09916 1.09104 1.08366 0.90055 0.90360 0.91016 0.84602
0.82685 0.95352 0.95279 0.92854 0.91527 0.88825 0.94356 0.92920
0.90525 0.93612 0.91390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.29 9.68 36.01 0.35 -0.94 16
2 C 0.02 0.25 5.95 -103.93 -0.62 -0.37 16
3 C -0.22 -2.47 9.79 -39.50 -0.39 -2.86 16
4 C 0.15 1.84 11.16 -17.50 -0.20 1.64 16
5 N -0.52 -8.60 6.58 -12.17 -0.08 -8.68 16
6 C 0.38 7.22 5.80 -155.09 -0.90 6.32 16
7 N -0.48 -10.25 4.00 -166.73 -0.67 -10.92 16
8 C 0.19 4.87 4.05 -4.98 -0.02 4.85 16
9 C -0.51 -13.71 6.84 -34.44 -0.24 -13.95 16
10 H 0.07 2.01 5.84 -52.49 -0.31 1.71 16
11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
12 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16
13 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16
14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
17 C 0.10 1.97 2.56 -67.72 -0.17 1.80 16
18 C -0.15 -2.88 7.80 37.16 0.29 -2.59 16
19 C -0.18 -3.39 8.35 37.16 0.31 -3.08 16
20 C -0.10 -1.70 5.51 -106.46 -0.59 -2.29 16
21 C 0.27 5.52 11.92 -22.47 -0.27 5.26 16
22 N -0.41 -9.22 18.54 41.84 0.78 -8.44 16
23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
24 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16
25 H 0.07 0.88 7.19 -51.93 -0.37 0.50 16
26 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16
27 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16
28 H 0.03 0.79 6.43 -51.93 -0.33 0.45 16
29 H 0.03 0.78 5.27 -51.93 -0.27 0.50 16
30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
31 H 0.07 1.22 7.74 -51.92 -0.40 0.81 16
32 H 0.09 2.06 5.70 -51.93 -0.30 1.76 16
33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
34 H 0.05 1.04 7.69 -51.93 -0.40 0.65 16
35 H 0.08 1.39 5.74 -51.93 -0.30 1.09 16
36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16
LS Contribution 302.67 15.07 4.56 4.56
Total: -1.00 -30.78 302.67 -6.89 -37.67
By element:
Atomic # 1 Polarization: 3.83 SS G_CDS: -4.66 Total: -0.83 kcal
Atomic # 6 Polarization: -2.15 SS G_CDS: -2.53 Total: -4.69 kcal
Atomic # 7 Polarization: -54.19 SS G_CDS: 0.76 Total: -53.43 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -30.78 -6.89 -37.67 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000129316904.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.509 kcal
(2) G-P(sol) polarization free energy of solvation -30.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.732 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds