Wall clock time and date at job start Mon Mar 30 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38414 * 120.81752 * 2 1 4 4 C 1.38292 * 119.50599 * 179.97438 * 3 2 1 5 5 N 1.31910 * 121.22176 * 359.74165 * 4 3 2 6 6 C 1.32360 * 121.78019 * 0.52968 * 5 4 3 7 7 N 1.38402 * 119.82681 * 179.75075 * 6 5 4 8 8 C 1.46898 * 111.00191 * 252.83140 * 7 6 5 9 9 C 1.50698 * 109.47034 * 200.64287 * 8 7 6 10 10 H 1.07996 * 119.99836 * 1.86683 * 9 8 7 11 11 C 1.37876 * 119.99741 * 181.86525 * 9 8 7 12 12 N 1.31506 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99789 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47008 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47099 * 119.99923 * 13 11 9 16 16 H 1.48507 * 109.46691 * 239.99882 * 13 11 9 17 17 C 1.46899 * 110.99870 * 16.78403 * 7 6 5 18 18 C 1.52998 * 109.47132 * 166.94183 * 17 7 6 19 19 C 1.52995 * 109.47264 * 286.94601 * 17 7 6 20 20 C 1.39921 * 120.81774 * 179.97438 * 2 1 3 21 21 C 1.43199 * 120.61015 * 0.02562 * 20 2 1 22 22 N 3.49457 * 81.58659 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47529 * 270.02378 * 1 2 3 24 24 H 1.09007 * 109.47289 * 30.02314 * 1 2 3 25 25 H 1.08999 * 109.47170 * 150.01997 * 1 2 3 26 26 H 1.08000 * 120.25087 * 359.95522 * 3 2 1 27 27 H 1.07997 * 119.38813 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46716 * 320.64510 * 8 7 6 29 29 H 1.08999 * 109.47030 * 80.64102 * 8 7 6 30 30 H 0.97001 * 120.00219 * 180.02562 * 12 11 9 31 31 H 1.09010 * 109.46921 * 46.94419 * 17 7 6 32 32 H 1.08997 * 109.47272 * 67.77077 * 18 17 7 33 33 H 1.08998 * 109.47182 * 187.77199 * 18 17 7 34 34 H 1.08998 * 109.47402 * 307.77002 * 18 17 7 35 35 H 1.08994 * 109.47728 * 59.99810 * 19 17 7 36 36 H 1.09004 * 109.47526 * 180.02562 * 19 17 7 37 37 H 1.09002 * 109.46675 * 299.99704 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1887 0.0000 4 6 3.5987 1.1571 0.0005 5 7 4.2564 0.0137 0.0061 6 6 3.6288 -1.1516 0.0011 7 7 4.3594 -2.3271 0.0021 8 6 4.2994 -2.9854 -1.3098 9 6 4.6445 -4.4442 -1.1560 10 1 4.8549 -4.8490 -0.1771 11 6 4.6915 -5.2621 -2.2649 12 7 4.4348 -4.7693 -3.4568 13 14 5.1186 -7.0707 -2.0742 14 1 5.3620 -7.3733 -0.6409 15 1 3.9919 -7.9004 -2.5714 16 1 6.3421 -7.3757 -2.8588 17 6 5.7507 -2.0818 0.4048 18 6 6.4361 -3.4153 0.7094 19 6 6.4931 -1.3743 -0.7306 20 6 2.2238 -1.2016 0.0005 21 6 1.5390 -2.4592 0.0005 22 7 0.9957 -3.4570 0.0015 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6936 2.1339 -0.0007 27 1 4.1500 2.0857 0.0010 28 1 3.2931 -2.8911 -1.7179 29 1 5.0116 -2.5129 -1.9863 30 1 4.4675 -5.3448 -4.2370 31 1 5.7657 -1.4537 1.2956 32 1 6.5446 -3.9869 -0.2123 33 1 7.4203 -3.2281 1.1388 34 1 5.8319 -3.9808 1.4187 35 1 6.0048 -0.4243 -0.9476 36 1 7.5256 -1.1926 -0.4320 37 1 6.4780 -2.0024 -1.6213 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129316904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:45 Heat of formation + Delta-G solvation = 63.123259 kcal Electronic energy + Delta-G solvation = -19668.673101 eV Core-core repulsion = 16832.078411 eV Total energy + Delta-G solvation = -2836.594690 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84720 -39.00778 -37.54386 -35.00294 -34.49838 -33.37577 -30.85847 -29.19261 -28.72343 -27.86174 -25.30847 -24.14600 -23.00775 -20.53440 -19.76931 -18.66372 -18.00405 -17.62065 -16.60465 -15.92814 -15.79952 -15.37958 -15.13499 -14.69187 -14.48855 -14.19043 -14.04160 -13.91794 -13.66963 -13.42595 -13.34264 -13.19892 -13.05212 -12.82772 -12.76796 -12.58406 -12.45149 -12.14573 -11.96502 -11.49905 -11.15156 -10.62351 -10.50367 -10.35150 -10.22159 -8.97796 -8.23630 -6.27226 -0.24206 0.28717 1.33978 1.36339 1.47993 1.78468 2.10338 2.34682 2.75210 2.99997 3.02466 3.10416 3.63898 3.81562 3.96947 4.23637 4.27970 4.43923 4.53118 4.62139 4.68566 4.76694 4.84699 4.89070 4.93210 4.99076 5.13763 5.16691 5.20092 5.30143 5.31660 5.56277 5.64804 5.70288 5.76723 5.97722 6.10711 6.54422 6.65273 6.80330 7.05690 7.36960 8.87744 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.007665 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.626499 B = 3652.286000 C = 4440.290501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.021 3.979 3 C -0.191 4.191 4 C 0.150 3.850 5 N -0.535 5.535 6 C 0.350 3.650 7 N -0.493 5.493 8 C 0.218 3.782 9 C -0.507 4.507 10 H 0.070 0.930 11 C 0.006 3.994 12 N -0.931 5.931 13 Si 0.955 3.045 14 H -0.264 1.264 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.102 3.898 18 C -0.142 4.142 19 C -0.170 4.170 20 C -0.129 4.129 21 C 0.285 3.715 22 N -0.466 5.466 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.047 0.953 26 H 0.189 0.811 27 H 0.202 0.798 28 H -0.006 1.006 29 H 0.009 0.991 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 16.354 7.515 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.011 3.989 3 C -0.211 4.211 4 C -0.009 4.009 5 N -0.250 5.250 6 C 0.117 3.883 7 N -0.211 5.211 8 C 0.095 3.905 9 C -0.545 4.545 10 H 0.088 0.912 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.780 3.220 14 H -0.188 1.188 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.005 4.005 18 C -0.200 4.200 19 C -0.229 4.229 20 C -0.138 4.138 21 C -0.029 4.029 22 N -0.143 5.143 23 H 0.117 0.883 24 H 0.133 0.867 25 H 0.066 0.934 26 H 0.207 0.793 27 H 0.219 0.781 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.124 14.343 7.686 16.411 hybrid contribution -0.185 -0.804 -0.838 1.176 sum -2.308 13.539 6.848 15.347 Atomic orbital electron populations 1.21003 0.87977 1.04239 1.04452 1.20615 0.97904 0.90347 0.90009 1.22222 0.94948 0.98755 1.05165 1.23643 0.92826 0.96027 0.88445 1.68089 1.40410 0.98106 1.18371 1.20194 0.89142 0.89490 0.89522 1.59460 1.14214 1.17461 1.29921 1.19595 0.94986 0.93825 0.82057 1.21504 1.45440 0.93726 0.93841 0.91228 1.25735 0.95715 1.02868 0.94938 1.70063 1.50801 1.37289 0.98988 0.85540 0.77794 0.80030 0.78621 1.18838 1.21318 1.19775 1.21436 0.84643 0.96513 0.97913 1.22066 0.99000 0.96794 1.02121 1.22437 1.00934 1.01313 0.98175 1.16760 0.91821 0.88097 1.17130 1.25508 0.92197 0.92713 0.92526 1.81110 1.11824 1.10558 1.10787 0.88330 0.86693 0.93427 0.79339 0.78089 0.98820 0.97329 0.92858 0.89875 0.91967 0.91167 0.94090 0.90012 0.91193 0.94965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.68 71.24 0.69 -1.52 16 2 C 0.02 0.52 5.95 -19.41 -0.12 0.41 16 3 C -0.19 -3.26 9.79 22.32 0.22 -3.04 16 4 C 0.15 3.01 11.16 84.69 0.95 3.96 16 5 N -0.54 -16.46 6.58 -192.43 -1.27 -17.73 16 6 C 0.35 13.33 5.80 133.64 0.78 14.11 16 7 N -0.49 -21.88 4.00 -681.41 -2.73 -24.60 16 8 C 0.22 11.58 4.05 85.56 0.35 11.93 16 9 C -0.51 -28.71 6.84 25.60 0.18 -28.53 16 10 H 0.07 3.93 5.84 -2.91 -0.02 3.91 16 11 C 0.01 0.32 5.46 84.66 0.46 0.78 16 12 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 13 Si 0.95 45.92 29.54 68.60 2.03 47.94 16 14 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 C 0.10 3.93 2.56 44.91 0.11 4.04 16 18 C -0.14 -5.54 7.80 71.98 0.56 -4.98 16 19 C -0.17 -6.24 8.35 71.98 0.60 -5.64 16 20 C -0.13 -4.63 5.51 -21.05 -0.12 -4.75 16 21 C 0.28 12.21 11.92 88.33 1.05 13.26 16 22 N -0.47 -22.17 18.54 19.00 0.35 -21.82 16 23 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.11 1.27 8.10 -2.38 -0.02 1.26 16 25 H 0.05 1.13 7.19 -2.39 -0.02 1.11 16 26 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 27 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 28 H -0.01 -0.37 6.43 -2.39 -0.02 -0.38 16 29 H 0.01 0.51 5.27 -2.39 -0.01 0.50 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.08 2.92 7.74 -2.38 -0.02 2.91 16 32 H 0.06 2.81 5.70 -2.39 -0.01 2.80 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.65 7.69 -2.39 -0.02 1.63 16 35 H 0.08 2.88 5.74 -2.39 -0.01 2.87 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.03 1.40 5.97 -2.39 -0.01 1.38 16 Total: -1.00 -72.86 302.67 5.47 -67.40 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.09 Total: 5.08 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.71 Total: 0.03 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -3.35 Total: -120.45 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.86 5.47 -67.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129316904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.519 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds