Wall clock time and date at job start Mon Mar 30 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47058 * 2 1 4 4 C 1.52995 * 109.47392 * 120.00062 * 2 1 3 5 5 N 1.46901 * 109.46872 * 65.52093 * 4 2 1 6 6 C 1.46903 * 110.99697 * 199.65992 * 5 4 2 7 7 C 1.50693 * 109.47245 * 66.05147 * 6 5 4 8 8 H 1.08001 * 120.00242 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00223 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99996 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47404 * 89.99907 * 11 9 7 13 13 H 1.48505 * 109.46840 * 210.00216 * 11 9 7 14 14 H 1.48501 * 109.47072 * 329.99678 * 11 9 7 15 15 C 1.39026 * 110.99812 * 75.71114 * 5 4 2 16 16 C 1.39431 * 120.56526 * 58.89336 * 15 5 4 17 17 C 1.38332 * 118.44173 * 180.22359 * 16 15 5 18 18 C 1.38692 * 119.48716 * 359.48245 * 17 16 15 19 19 N 1.31448 * 121.12398 * 0.30352 * 18 17 16 20 20 C 1.32906 * 121.69353 * 359.97278 * 19 18 17 21 21 C 1.43196 * 119.81128 * 180.02562 * 20 19 18 22 22 N 4.24327 * 59.35584 * 198.58494 * 2 1 3 23 23 H 1.09010 * 109.47161 * 299.99903 * 1 2 3 24 24 H 1.09002 * 109.47323 * 59.99372 * 1 2 3 25 25 H 1.09003 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46758 * 240.00126 * 2 1 3 27 27 H 1.09000 * 109.46845 * 175.05660 * 3 2 1 28 28 H 1.09005 * 109.47198 * 295.05651 * 3 2 1 29 29 H 1.09000 * 109.47164 * 55.05639 * 3 2 1 30 30 H 1.09011 * 109.47187 * 305.52733 * 4 2 1 31 31 H 1.08997 * 109.47523 * 185.52861 * 4 2 1 32 32 H 1.09005 * 109.47165 * 186.05140 * 6 5 4 33 33 H 1.09001 * 109.47464 * 306.04776 * 6 5 4 34 34 H 0.96999 * 119.99876 * 180.02562 * 10 9 7 35 35 H 1.08003 * 120.77682 * 359.97438 * 16 15 5 36 36 H 1.07991 * 120.25379 * 179.76200 * 17 16 15 37 37 H 1.08004 * 119.43698 * 180.27226 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6622 -2.1393 1.1843 6 6 1.7050 -2.7569 2.5166 7 6 0.6416 -2.1422 3.3896 8 1 -0.0015 -1.3697 2.9946 9 6 0.4895 -2.5660 4.6929 10 7 -0.4388 -2.0299 5.4546 11 14 1.6023 -3.9017 5.3764 12 1 2.8079 -3.2803 5.9810 13 1 0.8704 -4.6732 6.4130 14 1 2.0130 -4.8136 4.2787 15 6 2.4709 -2.8299 0.2889 16 6 3.8532 -2.8697 0.4671 17 6 4.6163 -3.5658 -0.4530 18 6 3.9915 -4.2082 -1.5116 19 7 2.6862 -4.1623 -1.6592 20 6 1.9097 -3.5025 -0.8058 21 6 0.4919 -3.4794 -1.0051 22 7 -0.6329 -3.4603 -1.1635 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 3.1263 1.4437 0.0886 28 1 1.7507 1.9302 -0.9310 29 1 1.6061 1.9813 0.8424 30 1 1.5981 -0.2677 2.1365 31 1 3.1255 -0.6363 1.3001 32 1 1.5263 -3.8284 2.4263 33 1 2.6846 -2.5884 2.9639 34 1 -0.5455 -2.3278 6.3715 35 1 4.3175 -2.3655 1.3017 36 1 5.6898 -3.6124 -0.3454 37 1 4.5878 -4.7552 -2.2270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129797418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:33 Heat of formation + Delta-G solvation = 69.491086 kcal Electronic energy + Delta-G solvation = -19479.268239 eV Core-core repulsion = 16642.949678 eV Total energy + Delta-G solvation = -2836.318560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58964 -37.64631 -36.02847 -34.46632 -32.74745 -32.13950 -30.36970 -27.71437 -26.72057 -25.33639 -24.52397 -22.93941 -20.78652 -19.61053 -19.27743 -17.20969 -16.52037 -15.96348 -15.43272 -14.92741 -14.51647 -14.17897 -13.81547 -13.68322 -13.47293 -13.03299 -12.62301 -12.51215 -12.50498 -12.33998 -12.17673 -11.87492 -11.85425 -11.37976 -11.01909 -10.88555 -10.55772 -10.42220 -10.25771 -9.97122 -9.74143 -9.71827 -9.38335 -8.77342 -8.69689 -7.86435 -6.15764 -4.14990 0.69495 1.18261 3.04192 3.11823 3.18727 3.28180 3.28796 3.77490 4.08679 4.21989 4.31410 4.78892 4.91266 4.97072 5.10575 5.15778 5.28319 5.30859 5.37623 5.54939 5.79464 5.95313 6.00023 6.03512 6.09899 6.23070 6.27454 6.30926 6.42450 6.49933 6.58555 6.70370 6.78351 6.94451 7.40513 7.54158 7.67754 7.90124 7.90880 8.48979 8.92929 9.43623 10.96731 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.008318 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.489773 B = 3365.370711 C = 4007.956878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.143 4.143 4 C 0.067 3.933 5 N -0.499 5.499 6 C 0.171 3.829 7 C -0.514 4.514 8 H 0.086 0.914 9 C 0.074 3.926 10 N -0.893 5.893 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.122 3.878 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.088 3.912 19 N -0.449 5.449 20 C 0.194 3.806 21 C 0.285 3.715 22 N -0.394 5.394 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.031 0.969 32 H 0.031 0.969 33 H -0.006 1.006 34 H 0.265 0.735 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.482 0.694 -10.924 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.059 4.059 5 N -0.220 5.220 6 C 0.047 3.953 7 C -0.552 4.552 8 H 0.104 0.896 9 C -0.129 4.129 10 N -0.531 5.531 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.192 1.192 15 C 0.021 3.979 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.072 4.072 19 N -0.159 5.159 20 C 0.056 3.944 21 C -0.032 4.032 22 N -0.071 5.071 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.747 0.270 -11.810 15.315 hybrid contribution 2.276 -0.328 1.662 2.837 sum 12.023 -0.058 -10.148 15.734 Atomic orbital electron populations 1.21716 0.94351 1.03002 1.00397 1.21093 0.97103 0.95119 0.97698 1.21794 1.00381 0.96347 1.01613 1.22321 0.97252 0.86549 0.99759 1.59463 1.49694 1.02283 1.10542 1.20290 0.96664 0.95362 0.82966 1.20925 1.16678 1.22567 0.95030 0.89601 1.24850 0.95169 0.96134 0.96767 1.69871 1.32675 1.42535 1.08017 0.86942 0.81130 0.82819 0.79384 1.20150 1.20935 1.19177 1.19977 0.90720 0.93952 0.93224 1.22326 0.94142 0.98315 0.99403 1.22269 1.01502 0.97153 0.95017 1.22655 0.89572 0.97856 0.97152 1.67512 1.06593 1.15278 1.26495 1.16477 0.86773 0.98397 0.92744 1.24516 0.91421 0.93975 0.93308 1.81132 1.11249 1.07044 1.07654 0.92580 0.94316 0.91332 0.92554 0.93206 0.93033 0.92359 0.87868 0.95129 0.95125 0.98874 0.92462 0.83994 0.84342 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.08 37.16 0.34 -2.01 16 2 C -0.09 -1.40 2.96 -90.62 -0.27 -1.67 16 3 C -0.14 -1.83 9.19 37.16 0.34 -1.48 16 4 C 0.07 1.16 4.11 -3.83 -0.02 1.14 16 5 N -0.50 -9.59 3.26 -172.10 -0.56 -10.15 16 6 C 0.17 3.83 3.45 -4.98 -0.02 3.81 16 7 C -0.51 -13.75 8.79 -34.44 -0.30 -14.05 16 8 H 0.09 2.51 7.55 -52.49 -0.40 2.12 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 11 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 15 C 0.12 2.01 3.93 -83.42 -0.33 1.69 16 16 C -0.11 -1.50 8.62 -39.10 -0.34 -1.84 16 17 C -0.14 -1.40 10.10 -39.38 -0.40 -1.80 16 18 C 0.09 0.96 11.17 -17.55 -0.20 0.76 16 19 N -0.45 -6.57 10.27 -10.92 -0.11 -6.68 16 20 C 0.19 3.26 6.61 -84.74 -0.56 2.70 16 21 C 0.29 5.40 14.52 -22.47 -0.33 5.07 16 22 N -0.39 -8.00 18.39 41.84 0.77 -7.23 16 23 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 26 H 0.06 0.87 7.59 -51.93 -0.39 0.48 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 2.04 6.58 -51.92 -0.34 1.69 16 31 H 0.03 0.46 6.68 -51.93 -0.35 0.12 16 32 H 0.03 0.73 7.11 -51.93 -0.37 0.36 16 33 H -0.01 -0.14 7.22 -51.93 -0.38 -0.51 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.14 1.73 7.29 -52.48 -0.38 1.35 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -30.28 314.40 -6.33 -36.61 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.10 Total: -1.76 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.17 Total: -5.74 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.87 Total: -49.74 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.28 -6.33 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129797418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.105 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds