Wall clock time and date at job start Mon Mar 30 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47058 * 2 1 4 4 C 1.52995 * 109.47392 * 120.00062 * 2 1 3 5 5 N 1.46901 * 109.46872 * 65.52093 * 4 2 1 6 6 C 1.46903 * 110.99697 * 199.65992 * 5 4 2 7 7 C 1.50693 * 109.47245 * 66.05147 * 6 5 4 8 8 H 1.08001 * 120.00242 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00223 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99996 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47404 * 89.99907 * 11 9 7 13 13 H 1.48505 * 109.46840 * 210.00216 * 11 9 7 14 14 H 1.48501 * 109.47072 * 329.99678 * 11 9 7 15 15 C 1.39026 * 110.99812 * 75.71114 * 5 4 2 16 16 C 1.39431 * 120.56526 * 58.89336 * 15 5 4 17 17 C 1.38332 * 118.44173 * 180.22359 * 16 15 5 18 18 C 1.38692 * 119.48716 * 359.48245 * 17 16 15 19 19 N 1.31448 * 121.12398 * 0.30352 * 18 17 16 20 20 C 1.32906 * 121.69353 * 359.97278 * 19 18 17 21 21 C 1.43196 * 119.81128 * 180.02562 * 20 19 18 22 22 N 4.24327 * 59.35584 * 198.58494 * 2 1 3 23 23 H 1.09010 * 109.47161 * 299.99903 * 1 2 3 24 24 H 1.09002 * 109.47323 * 59.99372 * 1 2 3 25 25 H 1.09003 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46758 * 240.00126 * 2 1 3 27 27 H 1.09000 * 109.46845 * 175.05660 * 3 2 1 28 28 H 1.09005 * 109.47198 * 295.05651 * 3 2 1 29 29 H 1.09000 * 109.47164 * 55.05639 * 3 2 1 30 30 H 1.09011 * 109.47187 * 305.52733 * 4 2 1 31 31 H 1.08997 * 109.47523 * 185.52861 * 4 2 1 32 32 H 1.09005 * 109.47165 * 186.05140 * 6 5 4 33 33 H 1.09001 * 109.47464 * 306.04776 * 6 5 4 34 34 H 0.96999 * 119.99876 * 180.02562 * 10 9 7 35 35 H 1.08003 * 120.77682 * 359.97438 * 16 15 5 36 36 H 1.07991 * 120.25379 * 179.76200 * 17 16 15 37 37 H 1.08004 * 119.43698 * 180.27226 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6622 -2.1393 1.1843 6 6 1.7050 -2.7569 2.5166 7 6 0.6416 -2.1422 3.3896 8 1 -0.0015 -1.3697 2.9946 9 6 0.4895 -2.5660 4.6929 10 7 -0.4388 -2.0299 5.4546 11 14 1.6023 -3.9017 5.3764 12 1 2.8079 -3.2803 5.9810 13 1 0.8704 -4.6732 6.4130 14 1 2.0130 -4.8136 4.2787 15 6 2.4709 -2.8299 0.2889 16 6 3.8532 -2.8697 0.4671 17 6 4.6163 -3.5658 -0.4530 18 6 3.9915 -4.2082 -1.5116 19 7 2.6862 -4.1623 -1.6592 20 6 1.9097 -3.5025 -0.8058 21 6 0.4919 -3.4794 -1.0051 22 7 -0.6329 -3.4603 -1.1635 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 3.1263 1.4437 0.0886 28 1 1.7507 1.9302 -0.9310 29 1 1.6061 1.9813 0.8424 30 1 1.5981 -0.2677 2.1365 31 1 3.1255 -0.6363 1.3001 32 1 1.5263 -3.8284 2.4263 33 1 2.6846 -2.5884 2.9639 34 1 -0.5455 -2.3278 6.3715 35 1 4.3175 -2.3655 1.3017 36 1 5.6898 -3.6124 -0.3454 37 1 4.5878 -4.7552 -2.2270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129797418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:32 Heat of formation + Delta-G solvation = 50.150447 kcal Electronic energy + Delta-G solvation = -19480.106912 eV Core-core repulsion = 16642.949678 eV Total energy + Delta-G solvation = -2837.157233 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71659 -38.94652 -37.47820 -35.81520 -34.68595 -33.20282 -31.74573 -29.41099 -27.98394 -26.69250 -25.59176 -24.44846 -22.30885 -20.90473 -20.43047 -19.02710 -17.71597 -17.22738 -16.94987 -16.15302 -16.04234 -15.52612 -15.20460 -15.04765 -14.64899 -14.42845 -14.21515 -14.02494 -13.87755 -13.75296 -13.49942 -13.22559 -13.06178 -12.84225 -12.70184 -12.60325 -11.97572 -11.81923 -11.75870 -11.55975 -11.42209 -10.81530 -10.76227 -10.71891 -9.89877 -9.27209 -8.29029 -6.33145 -0.39255 0.18548 1.32161 1.36467 1.45251 1.65305 1.91123 2.32538 2.58114 2.86338 2.91339 3.04881 3.85853 3.90781 3.94925 4.00650 4.13242 4.16242 4.30846 4.48424 4.61453 4.66988 4.74662 4.81561 4.88248 4.96574 5.01792 5.07883 5.11778 5.16534 5.26581 5.45257 5.47395 5.50774 5.54736 5.92309 6.23488 6.42635 6.63186 6.74109 6.83432 7.29460 8.87324 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.008318 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.489773 B = 3365.370711 C = 4007.956878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.072 3.928 5 N -0.517 5.517 6 C 0.185 3.815 7 C -0.514 4.514 8 H 0.040 0.960 9 C 0.010 3.990 10 N -0.946 5.946 11 Si 0.942 3.058 12 H -0.256 1.256 13 H -0.287 1.287 14 H -0.251 1.251 15 C 0.099 3.901 16 C -0.118 4.118 17 C -0.106 4.106 18 C 0.100 3.900 19 N -0.466 5.466 20 C 0.167 3.833 21 C 0.294 3.706 22 N -0.443 5.443 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.012 0.988 34 H 0.266 0.734 35 H 0.155 0.845 36 H 0.190 0.810 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.257 -0.351 -12.234 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 C -0.195 4.195 4 C -0.054 4.054 5 N -0.239 5.239 6 C 0.060 3.940 7 C -0.552 4.552 8 H 0.058 0.942 9 C -0.187 4.187 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.181 1.181 13 H -0.213 1.213 14 H -0.174 1.174 15 C -0.001 4.001 16 C -0.146 4.146 17 C -0.127 4.127 18 C -0.062 4.062 19 N -0.176 5.176 20 C 0.030 3.970 21 C -0.022 4.022 22 N -0.120 5.120 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.173 0.827 36 H 0.207 0.793 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 14.524 -0.762 -13.150 19.608 hybrid contribution 0.866 0.013 1.945 2.129 sum 15.390 -0.749 -11.205 19.051 Atomic orbital electron populations 1.21658 0.96336 1.00848 1.00243 1.21034 0.95300 0.96882 0.96953 1.21745 1.01524 0.94076 1.02128 1.22256 0.98497 0.85635 0.99001 1.59143 1.52172 1.03239 1.09328 1.19944 0.95514 0.94220 0.84331 1.21154 1.16913 1.21311 0.95829 0.94201 1.25804 0.96882 0.98853 0.97192 1.70047 1.35236 1.44825 1.08532 0.85799 0.79332 0.79628 0.78741 1.18086 1.21337 1.17447 1.19939 0.92098 0.95083 0.92967 1.22505 0.92468 0.98913 1.00685 1.22786 1.03645 0.93682 0.92562 1.23556 0.88324 0.96573 0.97722 1.67548 1.08404 1.15414 1.26282 1.16417 0.85735 1.00546 0.94256 1.25196 0.92326 0.92658 0.92024 1.81103 1.12666 1.08913 1.09358 0.94422 0.92633 0.94499 0.92014 0.91151 0.91516 0.93124 0.91559 0.92413 0.96280 0.97079 0.92474 0.82701 0.79261 0.77363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.08 71.98 0.65 -4.16 16 2 C -0.08 -2.53 2.96 -10.80 -0.03 -2.56 16 3 C -0.14 -3.27 9.19 71.98 0.66 -2.61 16 4 C 0.07 2.48 4.11 86.30 0.35 2.83 16 5 N -0.52 -20.09 3.26 -698.40 -2.28 -22.37 16 6 C 0.18 8.31 3.45 85.55 0.30 8.61 16 7 C -0.51 -28.77 8.79 25.60 0.22 -28.54 16 8 H 0.04 2.53 7.55 -2.91 -0.02 2.51 16 9 C 0.01 0.59 5.47 84.66 0.46 1.05 16 10 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 11 Si 0.94 42.46 27.47 68.60 1.88 44.34 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 15 C 0.10 3.13 3.93 38.77 0.15 3.28 16 16 C -0.12 -2.60 8.62 22.58 0.19 -2.41 16 17 C -0.11 -1.47 10.10 22.40 0.23 -1.25 16 18 C 0.10 1.61 11.17 84.86 0.95 2.56 16 19 N -0.47 -12.35 10.27 -188.47 -1.94 -14.29 16 20 C 0.17 5.44 6.61 40.70 0.27 5.71 16 21 C 0.29 11.54 14.52 88.33 1.28 12.82 16 22 N -0.44 -19.05 18.39 19.00 0.35 -18.70 16 23 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.55 7.12 -2.39 -0.02 1.53 16 26 H 0.06 1.84 7.59 -2.39 -0.02 1.83 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 2.76 6.58 -2.38 -0.02 2.74 16 31 H 0.06 1.64 6.68 -2.39 -0.02 1.62 16 32 H 0.02 0.90 7.11 -2.38 -0.02 0.89 16 33 H 0.01 0.47 7.22 -2.39 -0.02 0.46 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.16 3.02 7.29 -2.91 -0.02 3.00 16 36 H 0.19 0.83 8.06 -2.92 -0.02 0.81 16 37 H 0.21 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -72.63 314.40 5.02 -67.61 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.01 Total: 6.37 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.69 Total: -4.68 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -3.57 Total: -113.65 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -72.63 5.02 -67.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129797418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.763 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds