Wall clock time and date at job start Mon Mar 30 2020 07:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46967 * 2 1 4 4 N 1.46892 * 109.46859 * 120.00174 * 2 1 3 5 5 C 1.46900 * 111.00318 * 64.20836 * 4 2 1 6 6 C 1.50697 * 109.47372 * 71.49570 * 5 4 2 7 7 H 1.07999 * 119.99624 * 356.54070 * 6 5 4 8 8 C 1.37873 * 120.00191 * 176.53565 * 6 5 4 9 9 N 1.31509 * 120.00294 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99922 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47260 * 60.00373 * 10 8 6 12 12 H 1.48504 * 109.47155 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47117 * 300.00113 * 10 8 6 14 14 C 1.40036 * 111.00262 * 300.24974 * 4 2 1 15 15 C 1.38230 * 120.01872 * 87.92970 * 14 4 2 16 16 C 1.39811 * 119.84259 * 179.81781 * 15 14 4 17 17 C 1.43203 * 120.05592 * 180.20658 * 16 15 14 18 18 N 6.43449 * 52.79818 * 94.90159 * 2 1 3 19 19 C 1.39762 * 119.89141 * 0.46079 * 16 15 14 20 20 C 1.37792 * 120.04244 * 359.77166 * 19 16 15 21 21 C 1.38935 * 120.16257 * 359.97438 * 20 19 16 22 22 N 1.39489 * 119.94841 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47463 * 306.93530 * 1 2 3 24 24 H 1.09004 * 109.47283 * 66.93812 * 1 2 3 25 25 H 1.09000 * 109.47340 * 186.93397 * 1 2 3 26 26 H 1.09000 * 109.47083 * 240.00138 * 2 1 3 27 27 H 1.08998 * 109.46913 * 179.24546 * 3 2 1 28 28 H 1.09002 * 109.47493 * 299.25099 * 3 2 1 29 29 H 1.09001 * 109.47160 * 59.24720 * 3 2 1 30 30 H 1.09003 * 109.47200 * 191.49563 * 5 4 2 31 31 H 1.08996 * 109.47103 * 311.49185 * 5 4 2 32 32 H 0.97004 * 120.00529 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.08137 * 0.02562 * 15 14 4 34 34 H 1.08007 * 119.97846 * 179.74544 * 19 16 15 35 35 H 1.08009 * 119.92120 * 179.97438 * 20 19 16 36 36 H 0.97001 * 119.99650 * 180.02562 * 22 21 20 37 37 H 0.96996 * 120.00210 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.6325 -2.1095 1.1841 6 6 2.4372 -2.8389 0.1394 7 1 3.1231 -2.2935 -0.4919 8 6 2.2980 -4.2024 -0.0104 9 7 1.4626 -4.8664 0.7581 10 14 3.2962 -5.1065 -1.3049 11 1 4.7441 -4.9217 -1.0319 12 1 2.9650 -6.5536 -1.2638 13 1 2.9724 -4.5631 -2.6484 14 6 1.5659 -0.0609 2.3639 15 6 0.3469 -0.4136 2.9120 16 6 -0.1007 0.2166 4.0769 17 6 -1.3608 -0.1484 4.6510 18 7 -2.3604 -0.4379 5.1064 19 6 0.6813 1.2074 4.6773 20 6 1.8935 1.5588 4.1244 21 6 2.3426 0.9301 2.9697 22 7 3.5702 1.2897 2.4135 23 1 -0.3634 0.6175 0.8214 24 1 -0.3634 0.4026 -0.9456 25 1 -0.3634 -1.0201 0.1241 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0135 28 1 1.6877 1.9525 -0.8966 29 1 1.6656 1.9602 0.8832 30 1 1.8243 -2.5492 2.1629 31 1 0.5714 -2.1937 0.9496 32 1 1.3643 -5.8257 0.6525 33 1 -0.2568 -1.1767 2.4433 34 1 0.3349 1.6981 5.5749 35 1 2.4960 2.3250 4.5897 36 1 3.8844 0.8515 1.6072 37 1 4.1098 1.9780 2.8330 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130365185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:13 Heat of formation + Delta-G solvation = 62.309564 kcal Electronic energy + Delta-G solvation = -19487.709915 eV Core-core repulsion = 16651.079940 eV Total energy + Delta-G solvation = -2836.629974 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11253 -37.14005 -36.02884 -34.20124 -32.82019 -31.49244 -29.57220 -28.59638 -26.94818 -26.01088 -23.13650 -22.50866 -21.74928 -19.90009 -17.48574 -16.87053 -16.79676 -16.05779 -15.46740 -15.05443 -14.24892 -14.17993 -13.62071 -13.58386 -13.43311 -13.20402 -13.02618 -12.37675 -12.35507 -12.15316 -11.97940 -11.75537 -11.43256 -11.26019 -11.05920 -10.80122 -10.69127 -10.55939 -10.17116 -10.09963 -9.96856 -9.34994 -8.69539 -8.42779 -7.67219 -6.98894 -6.07349 -4.09671 1.32400 1.67170 3.04220 3.29633 3.33085 3.35014 3.36451 4.12080 4.24740 4.33300 4.38878 4.68089 5.13404 5.27686 5.31248 5.45492 5.58812 5.68690 5.74786 5.96256 6.00611 6.07697 6.21042 6.25400 6.30297 6.38282 6.47739 6.64694 6.68963 6.78898 6.91207 7.25665 7.30868 7.61265 7.79319 7.88291 8.01065 8.05750 8.11023 8.51457 8.95831 9.54347 11.02775 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.006821 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.140745 B = 4104.234471 C = 4792.495568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.086 3.914 3 C -0.145 4.145 4 N -0.490 5.490 5 C 0.191 3.809 6 C -0.509 4.509 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.040 3.960 15 C -0.055 4.055 16 C -0.096 4.096 17 C 0.272 3.728 18 N -0.452 5.452 19 C -0.036 4.036 20 C -0.207 4.207 21 C 0.259 3.741 22 N -0.858 5.858 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.005 0.995 32 H 0.263 0.737 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.412 0.588 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 14.304 2.165 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 C -0.203 4.203 4 N -0.210 5.210 5 C 0.067 3.933 6 C -0.548 4.548 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.059 4.059 15 C -0.079 4.079 16 C -0.103 4.103 17 C -0.042 4.042 18 N -0.129 5.129 19 C -0.058 4.058 20 C -0.231 4.231 21 C 0.148 3.852 22 N -0.397 5.397 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.245 0.755 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.044 13.649 2.836 14.089 hybrid contribution 0.363 -0.624 -0.928 1.175 sum 2.407 13.025 1.909 13.382 Atomic orbital electron populations 1.22513 0.98153 1.02725 1.01080 1.21625 0.92496 0.93686 0.94269 1.22024 1.00916 0.96261 1.01059 1.59968 1.57674 1.05273 0.98120 1.19910 0.95151 0.79802 0.98387 1.21037 1.23813 0.92111 1.17847 0.91939 1.24959 0.95562 0.97567 0.96334 1.69934 1.36197 1.08400 1.38907 0.86573 0.80522 0.78545 0.81816 1.20218 1.21394 1.20301 1.18401 0.92436 0.98185 0.96910 1.21638 0.94674 0.97903 0.93659 1.15693 0.90858 1.04316 0.99435 1.25837 0.92746 0.92785 0.92849 1.81174 1.12071 1.09705 1.09919 1.20670 0.92986 0.94206 0.97950 1.20277 0.98796 1.05745 0.98290 1.17795 0.85642 0.91258 0.90458 1.42734 1.19428 1.44621 1.32880 0.92987 0.93049 0.91348 0.88840 0.92477 0.93114 0.92771 0.94716 0.97777 0.92762 0.84986 0.85880 0.85666 0.75529 0.78101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 7.91 37.16 0.29 -2.75 16 2 C 0.09 1.44 2.85 -67.72 -0.19 1.25 16 3 C -0.14 -1.92 7.77 37.16 0.29 -1.63 16 4 N -0.49 -9.20 3.69 -164.77 -0.61 -9.81 16 5 C 0.19 4.55 3.58 -4.98 -0.02 4.53 16 6 C -0.51 -13.31 8.58 -34.44 -0.30 -13.61 16 7 H 0.06 1.60 7.38 -52.49 -0.39 1.21 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 10 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 14 C 0.04 0.68 3.74 -83.56 -0.31 0.36 16 15 C -0.05 -0.93 6.75 -39.00 -0.26 -1.20 16 16 C -0.10 -1.46 5.74 -106.81 -0.61 -2.07 16 17 C 0.27 4.49 15.32 -22.47 -0.34 4.15 16 18 N -0.45 -8.25 18.54 41.84 0.78 -7.47 16 19 C -0.04 -0.45 9.74 -39.18 -0.38 -0.83 16 20 C -0.21 -2.41 9.86 -39.49 -0.39 -2.80 16 21 C 0.26 3.52 5.35 -83.56 -0.45 3.08 16 22 N -0.86 -9.62 7.94 32.54 0.26 -9.36 16 23 H 0.05 0.81 6.53 -51.93 -0.34 0.47 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.29 5.83 -51.93 -0.30 0.99 16 26 H 0.09 1.74 7.09 -51.93 -0.37 1.37 16 27 H 0.06 0.70 6.49 -51.93 -0.34 0.37 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.71 6.17 -51.93 -0.32 0.39 16 30 H 0.03 0.92 7.88 -51.93 -0.41 0.51 16 31 H 0.00 0.12 4.91 -51.93 -0.25 -0.14 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.13 2.48 6.18 -52.49 -0.32 2.16 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.41 5.12 6.18 -40.82 -0.25 4.86 16 37 H 0.39 3.15 8.84 -40.82 -0.36 2.79 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -29.09 301.15 -6.57 -35.66 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.48 Total: 5.64 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.77 Total: -10.06 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 1.16 Total: -51.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.09 -6.57 -35.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130365185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.974 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds