Wall clock time and date at job start Mon Mar 30 2020 07:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46967 * 2 1 4 4 N 1.46892 * 109.46859 * 120.00174 * 2 1 3 5 5 C 1.46900 * 111.00318 * 64.20836 * 4 2 1 6 6 C 1.50697 * 109.47372 * 71.49570 * 5 4 2 7 7 H 1.07999 * 119.99624 * 356.54070 * 6 5 4 8 8 C 1.37873 * 120.00191 * 176.53565 * 6 5 4 9 9 N 1.31509 * 120.00294 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99922 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47260 * 60.00373 * 10 8 6 12 12 H 1.48504 * 109.47155 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47117 * 300.00113 * 10 8 6 14 14 C 1.40036 * 111.00262 * 300.24974 * 4 2 1 15 15 C 1.38230 * 120.01872 * 87.92970 * 14 4 2 16 16 C 1.39811 * 119.84259 * 179.81781 * 15 14 4 17 17 C 1.43203 * 120.05592 * 180.20658 * 16 15 14 18 18 N 6.43449 * 52.79818 * 94.90159 * 2 1 3 19 19 C 1.39762 * 119.89141 * 0.46079 * 16 15 14 20 20 C 1.37792 * 120.04244 * 359.77166 * 19 16 15 21 21 C 1.38935 * 120.16257 * 359.97438 * 20 19 16 22 22 N 1.39489 * 119.94841 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47463 * 306.93530 * 1 2 3 24 24 H 1.09004 * 109.47283 * 66.93812 * 1 2 3 25 25 H 1.09000 * 109.47340 * 186.93397 * 1 2 3 26 26 H 1.09000 * 109.47083 * 240.00138 * 2 1 3 27 27 H 1.08998 * 109.46913 * 179.24546 * 3 2 1 28 28 H 1.09002 * 109.47493 * 299.25099 * 3 2 1 29 29 H 1.09001 * 109.47160 * 59.24720 * 3 2 1 30 30 H 1.09003 * 109.47200 * 191.49563 * 5 4 2 31 31 H 1.08996 * 109.47103 * 311.49185 * 5 4 2 32 32 H 0.97004 * 120.00529 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.08137 * 0.02562 * 15 14 4 34 34 H 1.08007 * 119.97846 * 179.74544 * 19 16 15 35 35 H 1.08009 * 119.92120 * 179.97438 * 20 19 16 36 36 H 0.97001 * 119.99650 * 180.02562 * 22 21 20 37 37 H 0.96996 * 120.00210 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.6325 -2.1095 1.1841 6 6 2.4372 -2.8389 0.1394 7 1 3.1231 -2.2935 -0.4919 8 6 2.2980 -4.2024 -0.0104 9 7 1.4626 -4.8664 0.7581 10 14 3.2962 -5.1065 -1.3049 11 1 4.7441 -4.9217 -1.0319 12 1 2.9650 -6.5536 -1.2638 13 1 2.9724 -4.5631 -2.6484 14 6 1.5659 -0.0609 2.3639 15 6 0.3469 -0.4136 2.9120 16 6 -0.1007 0.2166 4.0769 17 6 -1.3608 -0.1484 4.6510 18 7 -2.3604 -0.4379 5.1064 19 6 0.6813 1.2074 4.6773 20 6 1.8935 1.5588 4.1244 21 6 2.3426 0.9301 2.9697 22 7 3.5702 1.2897 2.4135 23 1 -0.3634 0.6175 0.8214 24 1 -0.3634 0.4026 -0.9456 25 1 -0.3634 -1.0201 0.1241 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0135 28 1 1.6877 1.9525 -0.8966 29 1 1.6656 1.9602 0.8832 30 1 1.8243 -2.5492 2.1629 31 1 0.5714 -2.1937 0.9496 32 1 1.3643 -5.8257 0.6525 33 1 -0.2568 -1.1767 2.4433 34 1 0.3349 1.6981 5.5749 35 1 2.4960 2.3250 4.5897 36 1 3.8844 0.8515 1.6072 37 1 4.1098 1.9780 2.8330 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130365185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:13 Heat of formation + Delta-G solvation = 43.766924 kcal Electronic energy + Delta-G solvation = -19488.513984 eV Core-core repulsion = 16651.079940 eV Total energy + Delta-G solvation = -2837.434044 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36576 -38.46914 -37.32891 -35.34442 -34.78000 -32.83273 -30.86773 -29.96128 -28.27977 -27.62595 -24.67813 -23.75151 -23.16245 -21.24273 -18.77391 -18.37264 -17.88259 -17.62769 -16.97765 -16.58963 -15.92696 -15.31955 -14.95688 -14.83675 -14.72427 -14.64404 -14.32646 -13.94728 -13.66250 -13.53035 -13.18336 -13.09867 -12.86253 -12.84613 -12.65474 -12.41875 -12.25491 -11.93173 -11.80431 -11.48715 -11.26545 -11.24224 -10.57959 -9.86494 -9.07970 -8.22522 -8.08683 -6.25626 0.14824 0.54433 1.43162 1.45462 1.53076 1.72456 2.08728 2.42199 3.03224 3.09326 3.15377 3.19731 3.31207 4.01322 4.16401 4.28365 4.34575 4.48635 4.61980 4.70181 4.82990 4.90115 4.97642 5.03821 5.06339 5.21632 5.25604 5.31957 5.33371 5.51678 5.54438 5.59641 5.73420 5.89628 6.13063 6.35335 6.55348 6.62046 6.90027 6.94051 7.20849 7.43503 8.94018 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.006821 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.140745 B = 4104.234471 C = 4792.495568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 C -0.131 4.131 4 N -0.484 5.484 5 C 0.211 3.789 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.290 1.290 13 H -0.267 1.267 14 C 0.008 3.992 15 C -0.068 4.068 16 C -0.113 4.113 17 C 0.287 3.713 18 N -0.491 5.491 19 C -0.017 4.017 20 C -0.191 4.191 21 C 0.268 3.732 22 N -0.844 5.844 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.059 0.941 30 H -0.004 1.004 31 H -0.020 1.020 32 H 0.261 0.739 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.408 0.592 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 17.244 2.306 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 C -0.189 4.189 4 N -0.204 5.204 5 C 0.086 3.914 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.216 1.216 13 H -0.192 1.192 14 C -0.091 4.091 15 C -0.092 4.092 16 C -0.120 4.120 17 C -0.026 4.026 18 N -0.168 5.168 19 C -0.038 4.038 20 C -0.215 4.215 21 C 0.155 3.845 22 N -0.382 5.382 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.014 0.986 31 H -0.003 1.003 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.240 0.760 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.282 16.643 2.977 17.441 hybrid contribution -0.288 -1.453 -0.944 1.757 sum 3.994 15.190 2.033 15.837 Atomic orbital electron populations 1.22409 0.98268 1.00603 1.02277 1.21715 0.92489 0.95731 0.92619 1.21906 1.01602 0.93165 1.02203 1.59857 1.57692 1.02854 0.99957 1.19420 0.93397 0.83117 0.95483 1.21435 1.23509 0.92541 1.17991 0.91406 1.25869 0.96668 0.98680 0.98469 1.70092 1.38148 1.08486 1.40955 0.85493 0.79205 0.76883 0.79363 1.19162 1.21596 1.19214 1.18468 0.93349 1.00360 0.96957 1.21371 0.95039 0.97924 0.94847 1.15740 0.90922 1.05884 0.99420 1.26111 0.92714 0.91806 0.91977 1.81172 1.13207 1.11020 1.11425 1.21062 0.92352 0.92219 0.98166 1.20711 0.98458 1.05493 0.96812 1.17871 0.85846 0.90073 0.90685 1.42725 1.18570 1.44485 1.32419 0.92306 0.91188 0.95083 0.91148 0.91230 0.91303 0.92227 0.98580 1.00285 0.92988 0.88636 0.82493 0.81175 0.76027 0.75742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.99 7.91 71.98 0.57 -5.42 16 2 C 0.08 2.73 2.85 44.92 0.13 2.85 16 3 C -0.13 -3.15 7.77 71.98 0.56 -2.59 16 4 N -0.48 -18.55 3.69 -675.22 -2.49 -21.05 16 5 C 0.21 10.69 3.58 85.56 0.31 10.99 16 6 C -0.52 -27.90 8.58 25.60 0.22 -27.68 16 7 H 0.07 3.51 7.38 -2.91 -0.02 3.49 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.94 -56.28 13.29 21.44 0.28 -55.99 16 10 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 C 0.01 0.27 3.74 38.19 0.14 0.41 16 15 C -0.07 -2.40 6.75 22.65 0.15 -2.25 16 16 C -0.11 -3.35 5.74 -21.28 -0.12 -3.47 16 17 C 0.29 9.61 15.32 88.33 1.35 10.96 16 18 N -0.49 -18.32 18.54 19.00 0.35 -17.97 16 19 C -0.02 -0.35 9.74 22.53 0.22 -0.13 16 20 C -0.19 -3.54 9.86 22.33 0.22 -3.32 16 21 C 0.27 6.49 5.35 38.45 0.21 6.70 16 22 N -0.84 -15.73 7.94 -50.97 -0.40 -16.14 16 23 H 0.06 1.88 6.53 -2.39 -0.02 1.86 16 24 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.03 1.26 5.83 -2.39 -0.01 1.25 16 26 H 0.07 2.67 7.09 -2.39 -0.02 2.65 16 27 H 0.07 1.50 6.49 -2.39 -0.02 1.48 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.38 6.17 -2.39 -0.01 1.36 16 30 H 0.00 -0.23 7.88 -2.39 -0.02 -0.25 16 31 H -0.02 -1.12 4.91 -2.39 -0.01 -1.13 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.10 4.01 6.18 -2.91 -0.02 3.99 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.41 8.89 6.18 -92.71 -0.57 8.32 16 37 H 0.41 4.55 8.84 -92.71 -0.82 3.73 16 Total: -1.00 -67.53 301.15 3.91 -63.62 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.27 Total: 14.47 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.42 Total: -12.43 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -2.26 Total: -111.15 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.53 3.91 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130365185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.390 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds