Wall clock time and date at job start Mon Mar 30 2020 07:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48505 * 109.46959 * 265.76623 * 3 2 1 5 5 H 1.48497 * 109.47479 * 25.76596 * 3 2 1 6 6 H 1.48500 * 109.46823 * 145.77123 * 3 2 1 7 7 C 1.37876 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99591 * 353.91434 * 7 2 1 9 9 C 1.50701 * 120.00266 * 173.91626 * 7 2 1 10 10 H 1.09002 * 109.47022 * 355.29800 * 9 7 2 11 11 N 1.46895 * 109.46961 * 235.30109 * 9 7 2 12 12 C 1.46896 * 111.00358 * 85.00097 * 11 9 7 13 13 C 1.53000 * 109.47339 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46829 * 180.02562 * 13 12 11 15 15 C 1.53782 * 113.61279 * 274.13192 * 14 13 12 16 16 C 1.53960 * 87.02201 * 220.05349 * 15 14 13 17 17 C 1.53787 * 113.60980 * 176.52840 * 14 13 12 18 18 C 1.50697 * 109.46982 * 115.29732 * 9 7 2 19 19 C 1.38240 * 119.99696 * 73.71560 * 18 9 7 20 20 C 1.38239 * 119.99503 * 179.81116 * 19 18 9 21 21 C 1.38234 * 120.00481 * 0.38934 * 20 19 18 22 22 C 1.38237 * 119.99817 * 359.86134 * 21 20 19 23 23 C 1.38232 * 120.00399 * 253.98462 * 18 9 7 24 24 H 0.97004 * 120.00334 * 0.02562 * 1 2 3 25 25 H 1.00900 * 110.99771 * 208.95422 * 11 9 7 26 26 H 1.09007 * 109.46998 * 299.99976 * 12 11 9 27 27 H 1.08998 * 109.47087 * 59.99293 * 12 11 9 28 28 H 1.08999 * 109.46694 * 299.99449 * 13 12 11 29 29 H 1.09000 * 109.47210 * 60.00042 * 13 12 11 30 30 H 1.08994 * 112.85260 * 45.33263 * 14 13 12 31 31 H 1.08996 * 113.61344 * 334.56970 * 15 14 13 32 32 H 1.08995 * 113.61482 * 105.47347 * 15 14 13 33 33 H 1.09006 * 113.53122 * 270.81465 * 16 15 14 34 34 H 1.08993 * 113.66961 * 139.93115 * 16 15 14 35 35 H 1.08999 * 113.61376 * 254.52431 * 17 14 13 36 36 H 1.08998 * 113.61539 * 25.34998 * 17 14 13 37 37 H 1.07999 * 119.99938 * 359.97438 * 19 18 9 38 38 H 1.08001 * 119.99497 * 180.22990 * 20 19 18 39 39 H 1.07990 * 120.00246 * 179.83614 * 21 20 19 40 40 H 1.07997 * 120.00090 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.99784 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5860 1.9948 -1.3963 5 1 1.4046 2.6769 0.6086 6 1 3.4990 1.4677 0.7876 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1267 0.0982 9 6 3.5052 -1.1976 -0.1389 10 1 3.8567 -0.1801 -0.3098 11 7 3.8902 -2.0459 -1.2746 12 6 3.8389 -1.2933 -2.5351 13 6 4.2460 -2.2078 -3.6921 14 6 4.1931 -1.4237 -5.0049 15 6 2.7997 -1.4044 -5.6552 16 6 3.5164 -1.5773 -7.0068 17 6 4.6675 -2.2316 -6.2244 18 6 4.1247 -1.7375 1.1243 19 6 4.0606 -3.0902 1.4020 20 6 4.6324 -3.5861 2.5589 21 6 5.2612 -2.7283 3.4418 22 6 5.3208 -1.3749 3.1666 23 6 4.7523 -0.8796 2.0079 24 1 -0.4851 0.8400 -0.0004 25 1 4.8039 -2.4492 -1.1313 26 1 2.8249 -0.9283 -2.6994 27 1 4.5250 -0.4480 -2.4817 28 1 5.2600 -2.5723 -3.5276 29 1 3.5601 -3.0533 -3.7456 30 1 4.6528 -0.4384 -4.9282 31 1 2.1773 -2.2556 -5.3792 32 1 2.2832 -0.4501 -5.5527 33 1 3.7901 -0.6332 -7.4781 34 1 3.0079 -2.2598 -7.6876 35 1 5.6566 -1.9439 -6.5808 36 1 4.5578 -3.3093 -6.1037 37 1 3.5661 -3.7599 0.7140 38 1 4.5855 -4.6434 2.7740 39 1 5.7055 -3.1153 4.3468 40 1 5.8117 -0.7046 3.8566 41 1 4.7990 0.1778 1.7928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134179523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:22 Heat of formation + Delta-G solvation = 31.591512 kcal Electronic energy + Delta-G solvation = -19067.655564 eV Core-core repulsion = 16333.233898 eV Total energy + Delta-G solvation = -2734.421666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.87575 -38.57709 -35.67743 -32.68427 -31.47713 -30.23107 -29.10874 -26.63926 -25.48961 -24.04658 -22.39314 -21.90078 -20.77775 -19.79511 -19.17516 -16.98618 -16.25420 -15.52331 -14.99731 -14.77938 -14.51592 -14.24954 -13.98810 -13.63989 -12.96955 -12.78156 -12.65554 -12.30404 -12.27037 -12.16452 -11.98298 -11.50237 -11.17697 -10.97040 -10.94906 -10.56158 -10.49440 -10.38624 -10.07637 -9.89741 -9.82176 -9.76163 -9.51328 -8.63892 -8.25536 -7.91076 -7.31893 -6.14354 -4.10770 2.06291 2.10480 3.20369 3.27667 3.29971 4.32738 4.47701 4.71085 4.78653 4.85589 4.99350 5.10018 5.29979 5.50130 5.55780 5.62505 5.67655 5.74259 5.80027 5.87548 5.91846 5.95021 6.02595 6.05335 6.13265 6.24065 6.25541 6.27504 6.43813 6.49235 6.55104 6.68727 6.75761 6.80958 6.86680 7.11215 7.16893 7.44407 7.51879 7.73412 7.99563 8.32678 8.65432 8.99122 9.48346 10.98371 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.006172 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.786293 B = 4535.610010 C = 5621.801045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.073 3.927 3 Si 0.867 3.133 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.479 4.479 8 H 0.081 0.919 9 C 0.215 3.785 10 H 0.016 0.984 11 N -0.677 5.677 12 C 0.068 3.932 13 C -0.104 4.104 14 C -0.109 4.109 15 C -0.136 4.136 16 C -0.145 4.145 17 C -0.137 4.137 18 C -0.044 4.044 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.133 4.133 24 H 0.265 0.735 25 H 0.312 0.688 26 H 0.079 0.921 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.557 -3.093 -5.541 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.517 4.517 8 H 0.099 0.901 9 C 0.108 3.892 10 H 0.033 0.967 11 N -0.307 5.307 12 C -0.062 4.062 13 C -0.142 4.142 14 C -0.128 4.128 15 C -0.173 4.173 16 C -0.182 4.182 17 C -0.174 4.174 18 C -0.045 4.045 19 C -0.119 4.119 20 C -0.146 4.146 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.128 0.872 26 H 0.097 0.903 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.734 -3.225 -5.620 11.694 hybrid contribution 1.051 1.664 0.257 1.985 sum 10.785 -1.561 -5.363 12.146 Atomic orbital electron populations 1.69887 1.06123 1.26963 1.49809 1.25065 0.94736 0.98651 0.94545 0.87040 0.80346 0.84334 0.78746 1.20173 1.21324 1.19014 1.20816 0.87821 0.94736 1.48355 0.90102 1.18693 0.96304 0.90250 0.83976 0.96672 1.60920 1.30979 1.36754 1.02061 1.21815 1.01225 0.93782 0.89339 1.21545 1.00882 0.98689 0.93062 1.22513 0.97105 0.99248 0.93928 1.22995 0.96458 1.02479 0.95389 1.22850 0.98001 1.00575 0.96771 1.22929 0.97886 0.99812 0.96787 1.20577 0.92323 0.93342 0.98278 1.21010 0.98606 0.95539 0.96739 1.21079 0.99333 0.98958 0.95186 1.20884 1.02314 0.93785 0.99577 1.20951 1.00840 0.95337 0.97214 1.21101 0.99389 0.99467 0.95213 0.92525 0.87189 0.90267 0.97292 0.92831 0.91084 0.89815 0.89790 0.91649 0.90686 0.91860 0.92112 0.90205 0.85651 0.87090 0.87337 0.87266 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.17 26.94 -169.99 -4.58 16.59 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.15 5.63 56.52 0.32 -5.83 16 7 C -0.48 -13.17 8.84 -34.44 -0.30 -13.48 16 8 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 9 C 0.21 4.97 2.14 -70.02 -0.15 4.82 16 10 H 0.02 0.37 4.29 -51.93 -0.22 0.15 16 11 N -0.68 -13.79 5.85 -109.19 -0.64 -14.43 16 12 C 0.07 1.28 5.48 -3.83 -0.02 1.26 16 13 C -0.10 -1.57 5.30 -26.73 -0.14 -1.71 16 14 C -0.11 -1.46 3.64 -89.80 -0.33 -1.78 16 15 C -0.14 -1.81 7.65 -25.82 -0.20 -2.00 16 16 C -0.14 -1.60 8.09 -25.82 -0.21 -1.81 16 17 C -0.14 -1.54 7.65 -25.91 -0.20 -1.73 16 18 C -0.04 -0.94 4.64 -104.62 -0.49 -1.42 16 19 C -0.10 -1.97 9.08 -39.58 -0.36 -2.33 16 20 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 21 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 22 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 23 C -0.13 -2.66 9.67 -39.58 -0.38 -3.05 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.31 5.71 8.16 -39.29 -0.32 5.39 16 26 H 0.08 1.73 8.00 -51.93 -0.42 1.31 16 27 H 0.01 0.17 8.05 -51.93 -0.42 -0.25 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.13 2.46 7.91 -52.49 -0.42 2.05 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 2.23 6.82 -52.48 -0.36 1.87 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -29.06 330.89 -10.36 -39.42 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.84 Total: 8.59 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -4.07 Total: -29.17 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.13 Total: -40.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.58 Total: 16.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.06 -10.36 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134179523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.016 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds