Wall clock time and date at job start Mon Mar 30 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48505 * 109.46959 * 265.76623 * 3 2 1 5 5 H 1.48497 * 109.47479 * 25.76596 * 3 2 1 6 6 H 1.48500 * 109.46823 * 145.77123 * 3 2 1 7 7 C 1.37876 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99591 * 353.91434 * 7 2 1 9 9 C 1.50701 * 120.00266 * 173.91626 * 7 2 1 10 10 H 1.09002 * 109.47022 * 355.29800 * 9 7 2 11 11 N 1.46895 * 109.46961 * 235.30109 * 9 7 2 12 12 C 1.46896 * 111.00358 * 85.00097 * 11 9 7 13 13 C 1.53000 * 109.47339 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46829 * 180.02562 * 13 12 11 15 15 C 1.53782 * 113.61279 * 274.13192 * 14 13 12 16 16 C 1.53960 * 87.02201 * 220.05349 * 15 14 13 17 17 C 1.53787 * 113.60980 * 176.52840 * 14 13 12 18 18 C 1.50697 * 109.46982 * 115.29732 * 9 7 2 19 19 C 1.38240 * 119.99696 * 73.71560 * 18 9 7 20 20 C 1.38239 * 119.99503 * 179.81116 * 19 18 9 21 21 C 1.38234 * 120.00481 * 0.38934 * 20 19 18 22 22 C 1.38237 * 119.99817 * 359.86134 * 21 20 19 23 23 C 1.38232 * 120.00399 * 253.98462 * 18 9 7 24 24 H 0.97004 * 120.00334 * 0.02562 * 1 2 3 25 25 H 1.00900 * 110.99771 * 208.95422 * 11 9 7 26 26 H 1.09007 * 109.46998 * 299.99976 * 12 11 9 27 27 H 1.08998 * 109.47087 * 59.99293 * 12 11 9 28 28 H 1.08999 * 109.46694 * 299.99449 * 13 12 11 29 29 H 1.09000 * 109.47210 * 60.00042 * 13 12 11 30 30 H 1.08994 * 112.85260 * 45.33263 * 14 13 12 31 31 H 1.08996 * 113.61344 * 334.56970 * 15 14 13 32 32 H 1.08995 * 113.61482 * 105.47347 * 15 14 13 33 33 H 1.09006 * 113.53122 * 270.81465 * 16 15 14 34 34 H 1.08993 * 113.66961 * 139.93115 * 16 15 14 35 35 H 1.08999 * 113.61376 * 254.52431 * 17 14 13 36 36 H 1.08998 * 113.61539 * 25.34998 * 17 14 13 37 37 H 1.07999 * 119.99938 * 359.97438 * 19 18 9 38 38 H 1.08001 * 119.99497 * 180.22990 * 20 19 18 39 39 H 1.07990 * 120.00246 * 179.83614 * 21 20 19 40 40 H 1.07997 * 120.00090 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.99784 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5860 1.9948 -1.3963 5 1 1.4046 2.6769 0.6086 6 1 3.4990 1.4677 0.7876 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1267 0.0982 9 6 3.5052 -1.1976 -0.1389 10 1 3.8567 -0.1801 -0.3098 11 7 3.8902 -2.0459 -1.2746 12 6 3.8389 -1.2933 -2.5351 13 6 4.2460 -2.2078 -3.6921 14 6 4.1931 -1.4237 -5.0049 15 6 2.7997 -1.4044 -5.6552 16 6 3.5164 -1.5773 -7.0068 17 6 4.6675 -2.2316 -6.2244 18 6 4.1247 -1.7375 1.1243 19 6 4.0606 -3.0902 1.4020 20 6 4.6324 -3.5861 2.5589 21 6 5.2612 -2.7283 3.4418 22 6 5.3208 -1.3749 3.1666 23 6 4.7523 -0.8796 2.0079 24 1 -0.4851 0.8400 -0.0004 25 1 4.8039 -2.4492 -1.1313 26 1 2.8249 -0.9283 -2.6994 27 1 4.5250 -0.4480 -2.4817 28 1 5.2600 -2.5723 -3.5276 29 1 3.5601 -3.0533 -3.7456 30 1 4.6528 -0.4384 -4.9282 31 1 2.1773 -2.2556 -5.3792 32 1 2.2832 -0.4501 -5.5527 33 1 3.7901 -0.6332 -7.4781 34 1 3.0079 -2.2598 -7.6876 35 1 5.6566 -1.9439 -6.5808 36 1 4.5578 -3.3093 -6.1037 37 1 3.5661 -3.7599 0.7140 38 1 4.5855 -4.6434 2.7740 39 1 5.7055 -3.1153 4.3468 40 1 5.8117 -0.7046 3.8566 41 1 4.7990 0.1778 1.7928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134179523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:21 Heat of formation + Delta-G solvation = 15.420666 kcal Electronic energy + Delta-G solvation = -19068.356784 eV Core-core repulsion = 16333.233898 eV Total energy + Delta-G solvation = -2735.122886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23791 -39.76109 -37.28680 -34.62329 -33.11702 -31.64925 -30.49082 -28.50273 -26.49436 -25.48736 -23.92758 -23.29081 -22.18328 -21.44908 -20.21895 -19.06522 -17.71344 -16.71392 -16.67480 -16.14923 -15.98125 -15.88048 -15.29504 -15.00720 -14.83888 -14.29801 -14.18542 -13.88055 -13.48714 -13.33711 -13.28153 -13.02452 -12.80564 -12.60665 -12.38524 -12.07253 -11.86289 -11.78029 -11.59975 -11.47680 -11.39624 -10.97463 -10.95618 -10.71210 -9.67582 -9.41444 -9.04070 -8.32868 -6.33397 0.62615 0.67132 1.24039 1.26105 1.35074 2.26342 2.90835 3.14090 3.47015 3.75248 3.81976 3.95846 4.02023 4.15458 4.23915 4.31692 4.34433 4.42213 4.50061 4.61916 4.69601 4.77333 4.82915 4.87133 4.90830 4.91463 4.94463 5.09345 5.10610 5.24140 5.27664 5.31577 5.36103 5.46460 5.51310 5.67855 5.70882 5.74305 5.93404 6.10367 6.28504 6.49676 6.68577 6.94152 7.30130 8.84171 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.006172 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.786293 B = 4535.610010 C = 5621.801045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.927 3.073 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.477 4.477 8 H 0.032 0.968 9 C 0.222 3.778 10 H 0.009 0.991 11 N -0.682 5.682 12 C 0.071 3.929 13 C -0.092 4.092 14 C -0.115 4.115 15 C -0.149 4.149 16 C -0.134 4.134 17 C -0.125 4.125 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.151 4.151 24 H 0.265 0.735 25 H 0.328 0.672 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.798 -3.346 -4.993 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.752 3.248 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.516 4.516 8 H 0.050 0.950 9 C 0.114 3.886 10 H 0.026 0.974 11 N -0.313 5.313 12 C -0.059 4.059 13 C -0.130 4.130 14 C -0.133 4.133 15 C -0.187 4.187 16 C -0.171 4.171 17 C -0.162 4.162 18 C -0.075 4.075 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.170 4.170 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.009 -3.498 -5.077 14.396 hybrid contribution 0.065 1.592 0.161 1.601 sum 13.073 -1.906 -4.916 14.096 Atomic orbital electron populations 1.70039 1.07961 1.27840 1.52465 1.25838 0.95426 1.02379 0.94520 0.86071 0.79736 0.79700 0.79337 1.19423 1.21143 1.16853 1.20943 0.90448 0.92752 1.47495 0.94973 1.18447 0.93495 0.90582 0.86030 0.97354 1.60665 1.32145 1.36604 1.01876 1.21800 0.99166 0.94806 0.90104 1.21443 1.01426 0.97675 0.92425 1.22563 0.97403 0.99600 0.93778 1.23053 0.96533 1.01345 0.97748 1.22823 0.97279 1.01393 0.95605 1.22879 0.98752 0.99716 0.94891 1.20436 0.94670 0.94548 0.97827 1.21015 0.99559 0.94796 0.98093 1.21432 0.97976 1.00856 0.93910 1.21380 1.00544 0.93163 1.00286 1.21334 0.99730 0.96565 0.96386 1.21206 1.00390 0.99094 0.96317 0.92572 0.85368 0.94094 0.96808 0.90947 0.92065 0.89707 0.90928 0.93008 0.89598 0.90696 0.90388 0.89740 0.86997 0.84017 0.83221 0.83995 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.02 0.96 5.47 84.66 0.46 1.42 16 3 Si 0.93 44.79 26.94 68.60 1.85 46.64 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.24 -10.90 5.63 99.48 0.56 -10.34 16 7 C -0.48 -27.72 8.84 25.60 0.23 -27.49 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 9 C 0.22 10.55 2.14 43.42 0.09 10.64 16 10 H 0.01 0.42 4.29 -2.39 -0.01 0.41 16 11 N -0.68 -28.48 5.85 -499.37 -2.92 -31.40 16 12 C 0.07 2.74 5.48 86.30 0.47 3.21 16 13 C -0.09 -2.75 5.30 30.59 0.16 -2.59 16 14 C -0.11 -2.97 3.64 -10.26 -0.04 -3.01 16 15 C -0.15 -4.01 7.65 31.18 0.24 -3.77 16 16 C -0.13 -2.72 8.09 31.18 0.25 -2.47 16 17 C -0.13 -2.52 7.65 31.12 0.24 -2.28 16 18 C -0.07 -3.14 4.64 -19.87 -0.09 -3.24 16 19 C -0.12 -4.50 9.08 22.27 0.20 -4.29 16 20 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 21 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 22 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 23 C -0.15 -5.83 9.67 22.27 0.22 -5.62 16 24 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.33 12.01 8.16 -89.69 -0.73 11.28 16 26 H 0.04 1.88 8.00 -2.38 -0.02 1.86 16 27 H 0.01 0.52 8.05 -2.39 -0.02 0.50 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.95 7.88 -2.39 -0.02 1.93 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.11 4.52 7.91 -2.91 -0.02 4.50 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.15 3.02 8.06 -2.92 -0.02 3.00 16 40 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 41 H 0.11 4.10 6.82 -2.91 -0.02 4.08 16 Total: -1.00 -67.00 330.89 2.44 -64.56 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.11 Total: 29.84 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 3.10 Total: -50.23 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -2.62 Total: -90.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.85 Total: 46.64 kcal Total: -67.00 2.44 -64.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134179523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.982 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds