Wall clock time and date at job start Mon Mar 30 2020 07:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.67640 * 2 1 4 4 C 1.53324 * 109.68275 * 239.44399 * 2 1 3 5 5 C 1.52722 * 108.40572 * 170.43286 * 4 2 1 6 6 C 1.50627 * 110.59950 * 51.06727 * 5 4 2 7 7 C 1.38911 * 117.75839 * 162.57417 * 6 5 4 8 8 C 1.37928 * 120.54483 * 179.65534 * 7 6 5 9 9 C 1.38264 * 119.77538 * 359.46623 * 8 7 6 10 10 C 1.37938 * 119.76642 * 0.64242 * 9 8 7 11 11 C 1.37665 * 122.56100 * 342.18168 * 6 5 4 12 12 C 1.50627 * 122.56167 * 0.87180 * 11 6 5 13 13 H 1.09002 * 109.25405 * 221.79086 * 12 11 6 14 14 N 1.46898 * 109.25840 * 102.35449 * 12 11 6 15 15 C 1.46908 * 111.00084 * 128.50432 * 14 12 11 16 16 C 1.50703 * 109.46582 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00495 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99433 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00092 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99852 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46779 * 60.00122 * 20 18 16 22 22 H 1.48497 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47172 * 300.00267 * 20 18 16 24 24 H 1.08994 * 109.47267 * 293.65201 * 1 2 3 25 25 H 1.08999 * 109.47013 * 53.65821 * 1 2 3 26 26 H 1.08997 * 109.46788 * 173.65486 * 1 2 3 27 27 H 1.09006 * 109.46739 * 180.52043 * 3 2 1 28 28 H 1.09002 * 109.46880 * 300.51730 * 3 2 1 29 29 H 1.08997 * 109.47015 * 60.52247 * 3 2 1 30 30 H 1.09001 * 109.67712 * 290.15972 * 4 2 1 31 31 H 1.09007 * 109.67790 * 50.69849 * 4 2 1 32 32 H 1.09000 * 109.25447 * 290.77730 * 5 4 2 33 33 H 1.09000 * 109.25013 * 171.35674 * 5 4 2 34 34 H 1.07997 * 119.72643 * 359.37253 * 7 6 5 35 35 H 1.08003 * 120.11311 * 179.72885 * 8 7 6 36 36 H 1.08005 * 120.11961 * 180.37522 * 9 8 7 37 37 H 1.07996 * 119.72569 * 179.72310 * 10 9 8 38 38 H 1.00896 * 111.00221 * 252.45581 * 14 12 11 39 39 H 1.08999 * 109.46910 * 299.99916 * 15 14 12 40 40 H 1.08995 * 109.46965 * 60.00505 * 15 14 12 41 41 H 0.96992 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0452 1.4407 0.0000 4 6 2.0465 -0.7339 -1.2432 5 6 3.5543 -0.5127 -1.3422 6 6 4.2258 -0.8463 -0.0358 7 6 5.5985 -1.0586 -0.0496 8 6 6.2729 -1.3606 1.1151 9 6 5.5796 -1.4421 2.3085 10 6 4.2161 -1.2340 2.3240 11 6 3.5339 -0.9376 1.1508 12 6 2.0445 -0.7303 1.2388 13 1 1.8157 -0.1391 2.1255 14 7 1.3790 -2.0357 1.3429 15 6 0.4514 -2.0644 2.4818 16 6 -0.2104 -3.4163 2.5565 17 1 0.0332 -4.1778 1.8305 18 6 -1.1279 -3.6806 3.5513 19 7 -1.4250 -2.7531 4.4351 20 14 -1.9488 -5.3560 3.6436 21 1 -0.9134 -6.4053 3.8225 22 1 -2.8864 -5.3850 4.7948 23 1 -2.6988 -5.6097 2.3873 24 1 -0.3633 0.4123 0.9413 25 1 -0.3633 0.6090 -0.8278 26 1 -0.3633 -1.0214 -0.1136 27 1 3.1352 1.4367 -0.0093 28 1 1.6762 1.9585 -0.8853 29 1 1.6914 1.9530 0.8946 30 1 1.8370 -1.7999 -1.1536 31 1 1.5580 -0.3370 -2.1332 32 1 3.7490 0.5308 -1.5901 33 1 3.9602 -1.1498 -2.1279 34 1 6.1415 -0.9911 -0.9807 35 1 7.3396 -1.5286 1.0956 36 1 6.1030 -1.6722 3.2248 37 1 3.6745 -1.3022 3.2559 38 1 0.9040 -2.2690 0.4839 39 1 1.0022 -1.8785 3.4038 40 1 -0.3086 -1.2942 2.3508 41 1 -2.0707 -2.9389 5.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156724359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:09 Heat of formation + Delta-G solvation = 7.569218 kcal Electronic energy + Delta-G solvation = -19970.592809 eV Core-core repulsion = 17235.129459 eV Total energy + Delta-G solvation = -2735.463351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34661 -37.36775 -34.44578 -32.60038 -31.69930 -30.70067 -28.73620 -27.14278 -26.68076 -24.67215 -22.93363 -21.64189 -21.56962 -20.81518 -17.73885 -16.54220 -16.01468 -15.50022 -15.01496 -14.68879 -14.45867 -14.26060 -13.95490 -13.41464 -12.96750 -12.70844 -12.45928 -12.31372 -12.10632 -11.87048 -11.75896 -11.58417 -11.29874 -11.22128 -11.13121 -10.86267 -10.73598 -10.68615 -10.27998 -10.06268 -9.97294 -9.75686 -9.13186 -8.47304 -8.37697 -8.20939 -7.21581 -6.02008 -4.03523 1.73338 1.78150 3.34004 3.37930 3.41293 4.11224 4.44807 4.77986 4.94933 5.03709 5.17429 5.27435 5.28478 5.33917 5.42740 5.51786 5.56346 5.62496 5.74746 5.82449 5.90704 5.96916 6.02358 6.06702 6.09638 6.16722 6.21207 6.31465 6.37817 6.44936 6.52222 6.60068 6.69858 6.83027 6.92204 7.11020 7.27797 7.40926 7.46807 7.80580 8.15216 8.43863 8.64245 9.05817 9.61269 11.08837 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.006153 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.839645 B = 4549.654139 C = 5252.655353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.109 4.109 5 C -0.076 4.076 6 C -0.076 4.076 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.129 4.129 10 C -0.097 4.097 11 C -0.039 4.039 12 C 0.130 3.870 13 H 0.070 0.930 14 N -0.679 5.679 15 C 0.196 3.804 16 C -0.513 4.513 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.332 0.668 39 H 0.024 0.976 40 H -0.009 1.009 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 7.292 -9.937 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.113 4.113 6 C -0.077 4.077 7 C -0.148 4.148 8 C -0.149 4.149 9 C -0.147 4.147 10 C -0.116 4.116 11 C -0.040 4.040 12 C 0.020 3.980 13 H 0.088 0.912 14 N -0.311 5.311 15 C 0.069 3.931 16 C -0.552 4.552 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.043 0.957 40 H 0.008 0.992 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.859 7.013 -9.405 15.986 hybrid contribution -1.145 -0.456 -0.017 1.232 sum 9.714 6.557 -9.422 15.038 Atomic orbital electron populations 1.21899 0.94049 1.02426 1.01667 1.21054 0.95721 0.95544 0.96096 1.21897 1.01266 0.95306 1.01249 1.21605 0.94644 1.01240 0.97119 1.20450 0.95412 1.01174 0.94291 1.19546 0.93280 1.00317 0.94559 1.21011 0.93940 1.01995 0.97878 1.20915 0.99252 1.01676 0.93008 1.21014 0.94580 1.01367 0.97738 1.21199 0.93878 0.98021 0.98497 1.19671 0.95395 0.96890 0.92024 1.20394 0.89846 0.91502 0.96301 0.91184 1.60691 1.36402 1.25456 1.08526 1.19654 0.88977 0.96387 0.88052 1.21152 1.22384 0.98625 1.13026 0.92156 1.24963 0.96773 0.97085 0.95609 1.69945 1.34199 1.33365 1.16250 0.86579 0.79182 0.84350 0.77398 1.20211 1.21371 1.20301 0.92277 0.93057 0.91832 0.92191 0.93044 0.92902 0.90916 0.91911 0.90954 0.91420 0.86983 0.86889 0.86683 0.86226 0.84848 0.95741 0.99161 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.36 37.16 0.27 -1.94 16 2 C -0.08 -1.22 0.54 -154.47 -0.08 -1.31 16 3 C -0.14 -1.81 7.75 37.16 0.29 -1.52 16 4 C -0.11 -1.45 4.86 -26.71 -0.13 -1.58 16 5 C -0.08 -0.95 5.07 -28.06 -0.14 -1.09 16 6 C -0.08 -1.13 5.02 -104.62 -0.53 -1.66 16 7 C -0.13 -1.76 9.61 -39.45 -0.38 -2.14 16 8 C -0.13 -1.75 10.05 -39.69 -0.40 -2.15 16 9 C -0.13 -1.90 10.05 -39.68 -0.40 -2.30 16 10 C -0.10 -1.67 9.61 -39.44 -0.38 -2.05 16 11 C -0.04 -0.66 4.88 -104.62 -0.51 -1.17 16 12 C 0.13 2.32 1.63 -69.04 -0.11 2.21 16 13 H 0.07 1.36 7.51 -51.93 -0.39 0.97 16 14 N -0.68 -14.39 5.94 -109.40 -0.65 -15.04 16 15 C 0.20 5.02 4.91 -4.97 -0.02 5.00 16 16 C -0.51 -14.46 9.32 -34.44 -0.32 -14.78 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 20 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.06 1.00 7.63 -51.93 -0.40 0.61 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.08 6.67 -51.93 -0.35 0.73 16 27 H 0.06 0.77 5.55 -51.93 -0.29 0.48 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 31 H 0.06 0.73 8.13 -51.92 -0.42 0.31 16 32 H 0.07 0.81 6.81 -51.93 -0.35 0.45 16 33 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.11 1.24 8.05 -52.49 -0.42 0.82 16 35 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.12 2.15 8.05 -52.49 -0.42 1.73 16 38 H 0.33 6.79 5.28 -39.29 -0.21 6.59 16 39 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 40 H -0.01 -0.25 7.01 -51.93 -0.36 -0.61 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -29.59 316.55 -9.57 -39.16 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.47 Total: 5.25 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -2.94 Total: -24.95 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.09 Total: -41.00 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.59 -9.57 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156724359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.732 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds