Wall clock time and date at job start Mon Mar 30 2020 07:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.67640 * 2 1 4 4 C 1.53324 * 109.68275 * 239.44399 * 2 1 3 5 5 C 1.52722 * 108.40572 * 170.43286 * 4 2 1 6 6 C 1.50627 * 110.59950 * 51.06727 * 5 4 2 7 7 C 1.38911 * 117.75839 * 162.57417 * 6 5 4 8 8 C 1.37928 * 120.54483 * 179.65534 * 7 6 5 9 9 C 1.38264 * 119.77538 * 359.46623 * 8 7 6 10 10 C 1.37938 * 119.76642 * 0.64242 * 9 8 7 11 11 C 1.37665 * 122.56100 * 342.18168 * 6 5 4 12 12 C 1.50627 * 122.56167 * 0.87180 * 11 6 5 13 13 H 1.09002 * 109.25405 * 221.79086 * 12 11 6 14 14 N 1.46898 * 109.25840 * 102.35449 * 12 11 6 15 15 C 1.46908 * 111.00084 * 128.50432 * 14 12 11 16 16 C 1.50703 * 109.46582 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00495 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99433 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00092 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99852 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46779 * 60.00122 * 20 18 16 22 22 H 1.48497 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47172 * 300.00267 * 20 18 16 24 24 H 1.08994 * 109.47267 * 293.65201 * 1 2 3 25 25 H 1.08999 * 109.47013 * 53.65821 * 1 2 3 26 26 H 1.08997 * 109.46788 * 173.65486 * 1 2 3 27 27 H 1.09006 * 109.46739 * 180.52043 * 3 2 1 28 28 H 1.09002 * 109.46880 * 300.51730 * 3 2 1 29 29 H 1.08997 * 109.47015 * 60.52247 * 3 2 1 30 30 H 1.09001 * 109.67712 * 290.15972 * 4 2 1 31 31 H 1.09007 * 109.67790 * 50.69849 * 4 2 1 32 32 H 1.09000 * 109.25447 * 290.77730 * 5 4 2 33 33 H 1.09000 * 109.25013 * 171.35674 * 5 4 2 34 34 H 1.07997 * 119.72643 * 359.37253 * 7 6 5 35 35 H 1.08003 * 120.11311 * 179.72885 * 8 7 6 36 36 H 1.08005 * 120.11961 * 180.37522 * 9 8 7 37 37 H 1.07996 * 119.72569 * 179.72310 * 10 9 8 38 38 H 1.00896 * 111.00221 * 252.45581 * 14 12 11 39 39 H 1.08999 * 109.46910 * 299.99916 * 15 14 12 40 40 H 1.08995 * 109.46965 * 60.00505 * 15 14 12 41 41 H 0.96992 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0452 1.4407 0.0000 4 6 2.0465 -0.7339 -1.2432 5 6 3.5543 -0.5127 -1.3422 6 6 4.2258 -0.8463 -0.0358 7 6 5.5985 -1.0586 -0.0496 8 6 6.2729 -1.3606 1.1151 9 6 5.5796 -1.4421 2.3085 10 6 4.2161 -1.2340 2.3240 11 6 3.5339 -0.9376 1.1508 12 6 2.0445 -0.7303 1.2388 13 1 1.8157 -0.1391 2.1255 14 7 1.3790 -2.0357 1.3429 15 6 0.4514 -2.0644 2.4818 16 6 -0.2104 -3.4163 2.5565 17 1 0.0332 -4.1778 1.8305 18 6 -1.1279 -3.6806 3.5513 19 7 -1.4250 -2.7531 4.4351 20 14 -1.9488 -5.3560 3.6436 21 1 -0.9134 -6.4053 3.8225 22 1 -2.8864 -5.3850 4.7948 23 1 -2.6988 -5.6097 2.3873 24 1 -0.3633 0.4123 0.9413 25 1 -0.3633 0.6090 -0.8278 26 1 -0.3633 -1.0214 -0.1136 27 1 3.1352 1.4367 -0.0093 28 1 1.6762 1.9585 -0.8853 29 1 1.6914 1.9530 0.8946 30 1 1.8370 -1.7999 -1.1536 31 1 1.5580 -0.3370 -2.1332 32 1 3.7490 0.5308 -1.5901 33 1 3.9602 -1.1498 -2.1279 34 1 6.1415 -0.9911 -0.9807 35 1 7.3396 -1.5286 1.0956 36 1 6.1030 -1.6722 3.2248 37 1 3.6745 -1.3022 3.2559 38 1 0.9040 -2.2690 0.4839 39 1 1.0022 -1.8785 3.4038 40 1 -0.3086 -1.2942 2.3508 41 1 -2.0707 -2.9389 5.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156724359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:09 Heat of formation + Delta-G solvation = -9.045403 kcal Electronic energy + Delta-G solvation = -19971.313273 eV Core-core repulsion = 17235.129459 eV Total energy + Delta-G solvation = -2736.183815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57615 -38.60146 -36.13788 -34.44719 -33.01891 -32.07810 -29.91767 -28.81041 -28.00468 -26.25296 -24.15633 -23.50467 -22.84979 -22.03095 -19.12286 -18.38277 -17.31730 -16.98591 -16.56181 -16.10543 -15.85572 -15.49028 -15.42528 -14.74162 -14.41526 -14.12456 -13.88192 -13.84156 -13.60603 -13.17904 -13.00252 -12.97091 -12.79594 -12.64046 -12.60305 -12.40906 -12.27146 -12.03328 -11.92068 -11.53335 -11.36162 -11.14783 -10.96743 -10.66533 -9.56280 -9.37500 -9.00952 -8.23161 -6.34396 0.58171 0.59373 1.38217 1.41947 1.49891 2.38251 2.92746 3.09592 3.59099 3.74285 3.79865 3.92500 4.09965 4.17856 4.25919 4.33975 4.45520 4.49203 4.52719 4.67454 4.75578 4.77133 4.87429 4.91586 4.98637 5.01773 5.07554 5.10857 5.20954 5.25243 5.28765 5.30987 5.35964 5.40738 5.54364 5.61330 5.69964 5.75526 5.92449 6.03140 6.25889 6.48586 6.74326 6.91496 7.36479 8.87861 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.006153 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.839645 B = 4549.654139 C = 5252.655353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.105 4.105 5 C -0.074 4.074 6 C -0.079 4.079 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.063 4.063 12 C 0.132 3.868 13 H 0.035 0.965 14 N -0.678 5.678 15 C 0.218 3.782 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.264 1.264 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.336 0.664 39 H -0.013 1.013 40 H -0.032 1.032 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 7.014 -12.868 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C -0.191 4.191 4 C -0.143 4.143 5 C -0.110 4.110 6 C -0.080 4.080 7 C -0.145 4.145 8 C -0.143 4.143 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.064 4.064 12 C 0.022 3.978 13 H 0.054 0.946 14 N -0.310 5.310 15 C 0.090 3.910 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.189 1.189 24 H 0.049 0.951 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.107 0.893 38 H 0.156 0.844 39 H 0.005 0.995 40 H -0.014 1.014 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.466 6.745 -12.354 18.802 hybrid contribution -1.566 -0.323 0.922 1.846 sum 10.900 6.421 -11.432 17.051 Atomic orbital electron populations 1.21863 0.94941 1.01455 1.01381 1.21018 0.94906 0.96773 0.95317 1.21843 1.01526 0.93733 1.01959 1.21591 0.95959 0.99814 0.96897 1.20532 0.94091 1.03055 0.93342 1.19865 0.94202 0.99392 0.94543 1.21441 0.93384 1.00304 0.99344 1.21333 1.00888 0.99910 0.92155 1.21230 0.93520 1.01126 0.99500 1.21187 0.95347 1.00504 0.97755 1.19592 0.94374 0.99155 0.93235 1.20385 0.90938 0.89684 0.96825 0.94641 1.60580 1.34885 1.28281 1.07258 1.19196 0.88439 0.95005 0.88356 1.21506 1.22997 0.99418 1.13386 0.92119 1.25921 0.97283 1.01327 0.94966 1.70085 1.34776 1.35658 1.16852 0.85426 0.78153 0.79006 0.77961 1.19603 1.20672 1.18924 0.95078 0.89940 0.93881 0.91660 0.90301 0.94184 0.92883 0.89117 0.88620 0.89152 0.83385 0.83499 0.85221 0.89349 0.84380 0.99476 1.01424 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 7.36 71.98 0.53 -3.88 16 2 C -0.08 -2.32 0.54 -52.16 -0.03 -2.35 16 3 C -0.13 -3.26 7.75 71.98 0.56 -2.71 16 4 C -0.11 -2.56 4.86 30.61 0.15 -2.42 16 5 C -0.07 -1.55 5.07 29.73 0.15 -1.40 16 6 C -0.08 -2.18 5.02 -19.86 -0.10 -2.28 16 7 C -0.13 -2.96 9.61 22.36 0.21 -2.74 16 8 C -0.12 -2.99 10.05 22.20 0.22 -2.76 16 9 C -0.14 -3.96 10.05 22.20 0.22 -3.74 16 10 C -0.13 -4.68 9.61 22.36 0.21 -4.47 16 11 C -0.06 -2.17 4.88 -19.86 -0.10 -2.27 16 12 C 0.13 5.00 1.63 44.06 0.07 5.07 16 13 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 14 N -0.68 -30.65 5.94 -500.03 -2.97 -33.62 16 15 C 0.22 12.08 4.91 85.56 0.42 12.50 16 16 C -0.53 -31.44 9.32 25.60 0.24 -31.20 16 17 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 20 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 24 H 0.03 1.12 7.63 -2.39 -0.02 1.11 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.51 6.67 -2.39 -0.02 1.50 16 27 H 0.06 1.54 5.55 -2.38 -0.01 1.53 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.51 6.73 -2.39 -0.02 1.50 16 31 H 0.09 1.74 8.13 -2.38 -0.02 1.72 16 32 H 0.10 1.64 6.81 -2.39 -0.02 1.62 16 33 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 34 H 0.15 2.42 8.05 -2.91 -0.02 2.39 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.09 3.61 8.05 -2.91 -0.02 3.59 16 38 H 0.34 14.45 5.28 -89.70 -0.47 13.98 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H -0.03 -1.87 7.01 -2.39 -0.02 -1.89 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -67.84 316.55 3.10 -64.74 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.53 Total: 22.90 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.23 Total: -43.99 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -2.68 Total: -91.01 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.84 3.10 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156724359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.696 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds