Wall clock time and date at job start Mon Mar 30 2020 07:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46895 * 109.46970 * 2 1 4 4 C 1.46900 * 111.00007 * 159.47228 * 3 2 1 5 5 C 1.50703 * 109.46806 * 287.85380 * 4 3 2 6 6 H 1.07993 * 119.99790 * 354.46395 * 5 4 3 7 7 C 1.37879 * 119.99611 * 174.47527 * 5 4 3 8 8 N 1.31509 * 120.00451 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99576 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47119 * 89.99480 * 9 7 5 11 11 H 1.48497 * 109.46834 * 209.99794 * 9 7 5 12 12 H 1.48506 * 109.46936 * 329.99653 * 9 7 5 13 13 C 1.38604 * 111.00101 * 283.42261 * 3 2 1 14 14 C 1.39430 * 120.94945 * 296.29371 * 13 3 2 15 15 C 1.37825 * 119.21859 * 180.25184 * 14 13 3 16 16 C 1.50696 * 119.39436 * 179.72437 * 15 14 13 17 17 N 1.32148 * 121.21758 * 359.74902 * 15 14 13 18 18 C 1.31673 * 122.11299 * 359.97438 * 17 15 14 19 19 C 1.50697 * 119.69025 * 180.02562 * 18 17 15 20 20 C 1.39533 * 120.61929 * 0.02562 * 18 17 15 21 21 C 1.43194 * 120.63474 * 179.97438 * 20 18 17 22 22 N 4.48124 * 65.63801 * 6.28645 * 2 1 3 23 23 H 1.09001 * 109.46966 * 305.33258 * 1 2 3 24 24 H 1.09005 * 109.46774 * 65.32794 * 1 2 3 25 25 H 1.09001 * 109.47045 * 185.32776 * 1 2 3 26 26 H 1.09000 * 109.47043 * 239.99981 * 2 1 3 27 27 H 1.08994 * 109.46959 * 120.00124 * 2 1 3 28 28 H 1.09006 * 109.47031 * 47.84677 * 4 3 2 29 29 H 1.09000 * 109.47155 * 167.84894 * 4 3 2 30 30 H 0.97003 * 120.00233 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.39058 * 359.97438 * 14 13 3 32 32 H 1.09000 * 109.47179 * 270.02786 * 16 15 14 33 33 H 1.09008 * 109.47021 * 30.02162 * 16 15 14 34 34 H 1.08999 * 109.47650 * 150.02450 * 16 15 14 35 35 H 1.08997 * 109.47394 * 269.97898 * 19 18 17 36 36 H 1.09009 * 109.47247 * 29.97756 * 19 18 17 37 37 H 1.08999 * 109.47277 * 149.97839 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4061 1.4532 0.4809 5 6 3.4353 1.2025 1.9666 6 1 2.5107 1.1004 2.5152 7 6 4.6424 1.1036 2.6254 8 7 5.7683 1.2275 1.9573 9 14 4.6786 0.7935 4.4672 10 1 4.7019 -0.6693 4.7226 11 1 5.8934 1.4173 5.0504 12 1 3.4689 1.3859 5.0928 13 6 1.9021 1.9534 -1.2586 14 6 2.6180 1.4484 -2.3433 15 6 2.4780 2.0445 -3.5781 16 6 3.2547 1.5058 -4.7517 17 7 1.6757 3.0800 -3.7517 18 6 0.9723 3.5939 -2.7642 19 6 0.0736 4.7753 -3.0238 20 6 1.0514 3.0547 -1.4797 21 6 0.2871 3.6136 -0.4055 22 7 -0.3184 4.0577 0.4470 23 1 -0.3633 0.5943 0.8384 24 1 -0.3633 0.4290 -0.9339 25 1 -0.3633 -1.0232 0.0954 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0045 0.6968 -0.0270 29 1 3.8152 2.4415 0.2710 30 1 6.6176 1.1583 2.4209 31 1 3.2779 0.6029 -2.2164 32 1 4.2172 2.0134 -4.8143 33 1 3.4162 0.4358 -4.6203 34 1 2.6926 1.6783 -5.6695 35 1 0.6319 5.6981 -2.8660 36 1 -0.2857 4.7395 -4.0524 37 1 -0.7754 4.7430 -2.3411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157414149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:29 Heat of formation + Delta-G solvation = 59.361997 kcal Electronic energy + Delta-G solvation = -19178.226430 eV Core-core repulsion = 16341.468639 eV Total energy + Delta-G solvation = -2836.757791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59241 -37.38810 -36.18846 -33.56027 -32.89476 -31.62027 -29.86689 -29.09988 -27.27918 -26.50829 -22.83649 -22.58416 -22.34078 -19.77033 -18.63791 -17.06085 -16.25452 -15.57614 -15.24303 -14.66031 -14.09536 -14.06040 -13.97462 -13.40090 -13.35545 -12.83881 -12.80813 -12.61497 -12.48846 -12.35055 -12.28035 -12.10928 -11.73879 -11.62399 -11.41367 -11.15106 -10.88118 -10.70321 -10.45388 -10.18299 -9.54157 -9.46424 -9.04225 -8.64200 -8.57113 -7.77155 -6.15216 -4.17712 0.81330 1.33020 3.14447 3.25744 3.27697 3.32694 3.38035 4.04709 4.10617 4.19314 4.35372 4.42790 4.81694 5.15806 5.20251 5.22742 5.44341 5.51841 5.54225 5.55005 5.62279 5.64563 5.74722 5.81449 5.95084 6.03468 6.07572 6.19296 6.28752 6.52256 6.59858 6.66047 7.02729 7.06785 7.65344 7.78607 7.90311 7.96463 8.06509 8.33168 8.89736 9.47374 10.95117 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.006405 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.229317 B = 4370.672311 C = 4864.079790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 N -0.517 5.517 4 C 0.202 3.798 5 C -0.511 4.511 6 H 0.066 0.934 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.222 3.778 14 C -0.213 4.213 15 C 0.160 3.840 16 C -0.105 4.105 17 N -0.498 5.498 18 C 0.184 3.816 19 C -0.107 4.107 20 C -0.086 4.086 21 C 0.283 3.717 22 N -0.423 5.423 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.095 0.905 28 H 0.009 0.991 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 -0.346 -12.652 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.239 5.239 4 C 0.079 3.921 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.116 3.884 14 C -0.236 4.236 15 C 0.024 3.976 16 C -0.162 4.162 17 N -0.209 5.209 18 C 0.041 3.959 19 C -0.164 4.164 20 C -0.093 4.093 21 C -0.032 4.032 22 N -0.099 5.099 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.856 0.940 -11.768 14.180 hybrid contribution 1.170 -1.195 1.121 2.014 sum -6.686 -0.255 -10.647 12.574 Atomic orbital electron populations 1.21810 0.96055 1.00974 1.01626 1.22096 0.94736 0.87481 1.01988 1.59639 1.27873 1.18872 1.17567 1.19865 0.78941 0.97138 0.96132 1.21073 0.92729 1.49163 0.92029 0.91566 1.24967 0.95383 0.95187 0.98777 1.69942 0.97457 1.49958 1.36138 0.86463 0.77706 0.78330 0.84791 1.20557 1.21138 1.19685 1.19404 0.88368 0.90191 0.90388 1.22605 1.03461 1.04075 0.93424 1.21231 0.92009 0.90065 0.94333 1.20759 0.99431 1.00903 0.95117 1.67380 1.08342 1.11748 1.33406 1.21199 0.93287 0.94647 0.86734 1.20783 0.97652 0.94370 1.03636 1.16958 1.01964 0.99747 0.90609 1.24897 0.92934 0.92902 0.92496 1.81130 1.10559 1.09626 1.08564 0.91998 0.93890 0.92618 0.94972 0.88625 0.97354 0.95362 0.92704 0.84055 0.90020 0.90534 0.90405 0.89746 0.89736 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.96 37.16 0.37 -1.94 16 2 C 0.06 1.14 5.47 -3.82 -0.02 1.12 16 3 N -0.52 -10.70 3.82 -172.00 -0.66 -11.36 16 4 C 0.20 4.97 4.24 -4.97 -0.02 4.95 16 5 C -0.51 -13.90 8.30 -34.44 -0.29 -14.19 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.22 4.04 4.08 -83.35 -0.34 3.70 16 14 C -0.21 -3.39 8.18 -39.29 -0.32 -3.71 16 15 C 0.16 2.25 6.77 -82.61 -0.56 1.69 16 16 C -0.10 -1.07 10.16 36.00 0.37 -0.70 16 17 N -0.50 -7.27 10.16 -5.50 -0.06 -7.32 16 18 C 0.18 2.69 6.82 -82.18 -0.56 2.13 16 19 C -0.11 -1.21 9.78 36.00 0.35 -0.85 16 20 C -0.09 -1.47 5.77 -106.48 -0.61 -2.08 16 21 C 0.28 5.23 13.39 -22.47 -0.30 4.93 16 22 N -0.42 -8.38 18.54 41.84 0.78 -7.60 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.65 7.87 -51.93 -0.41 0.24 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.53 6.99 -51.93 -0.36 0.17 16 27 H 0.10 1.88 7.12 -51.93 -0.37 1.51 16 28 H 0.01 0.22 7.73 -51.93 -0.40 -0.18 16 29 H 0.03 0.76 7.97 -51.93 -0.41 0.35 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.14 2.16 7.45 -52.49 -0.39 1.77 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.67 8.07 -51.92 -0.42 0.25 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -30.10 320.30 -6.64 -36.74 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.22 Total: -3.23 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.03 Total: -3.43 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.80 Total: -51.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.10 -6.64 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157414149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.104 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds