Wall clock time and date at job start Mon Mar 30 2020 07:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46895 * 109.46970 * 2 1 4 4 C 1.46900 * 111.00007 * 159.47228 * 3 2 1 5 5 C 1.50703 * 109.46806 * 287.85380 * 4 3 2 6 6 H 1.07993 * 119.99790 * 354.46395 * 5 4 3 7 7 C 1.37879 * 119.99611 * 174.47527 * 5 4 3 8 8 N 1.31509 * 120.00451 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99576 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47119 * 89.99480 * 9 7 5 11 11 H 1.48497 * 109.46834 * 209.99794 * 9 7 5 12 12 H 1.48506 * 109.46936 * 329.99653 * 9 7 5 13 13 C 1.38604 * 111.00101 * 283.42261 * 3 2 1 14 14 C 1.39430 * 120.94945 * 296.29371 * 13 3 2 15 15 C 1.37825 * 119.21859 * 180.25184 * 14 13 3 16 16 C 1.50696 * 119.39436 * 179.72437 * 15 14 13 17 17 N 1.32148 * 121.21758 * 359.74902 * 15 14 13 18 18 C 1.31673 * 122.11299 * 359.97438 * 17 15 14 19 19 C 1.50697 * 119.69025 * 180.02562 * 18 17 15 20 20 C 1.39533 * 120.61929 * 0.02562 * 18 17 15 21 21 C 1.43194 * 120.63474 * 179.97438 * 20 18 17 22 22 N 4.48124 * 65.63801 * 6.28645 * 2 1 3 23 23 H 1.09001 * 109.46966 * 305.33258 * 1 2 3 24 24 H 1.09005 * 109.46774 * 65.32794 * 1 2 3 25 25 H 1.09001 * 109.47045 * 185.32776 * 1 2 3 26 26 H 1.09000 * 109.47043 * 239.99981 * 2 1 3 27 27 H 1.08994 * 109.46959 * 120.00124 * 2 1 3 28 28 H 1.09006 * 109.47031 * 47.84677 * 4 3 2 29 29 H 1.09000 * 109.47155 * 167.84894 * 4 3 2 30 30 H 0.97003 * 120.00233 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.39058 * 359.97438 * 14 13 3 32 32 H 1.09000 * 109.47179 * 270.02786 * 16 15 14 33 33 H 1.09008 * 109.47021 * 30.02162 * 16 15 14 34 34 H 1.08999 * 109.47650 * 150.02450 * 16 15 14 35 35 H 1.08997 * 109.47394 * 269.97898 * 19 18 17 36 36 H 1.09009 * 109.47247 * 29.97756 * 19 18 17 37 37 H 1.08999 * 109.47277 * 149.97839 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4061 1.4532 0.4809 5 6 3.4353 1.2025 1.9666 6 1 2.5107 1.1004 2.5152 7 6 4.6424 1.1036 2.6254 8 7 5.7683 1.2275 1.9573 9 14 4.6786 0.7935 4.4672 10 1 4.7019 -0.6693 4.7226 11 1 5.8934 1.4173 5.0504 12 1 3.4689 1.3859 5.0928 13 6 1.9021 1.9534 -1.2586 14 6 2.6180 1.4484 -2.3433 15 6 2.4780 2.0445 -3.5781 16 6 3.2547 1.5058 -4.7517 17 7 1.6757 3.0800 -3.7517 18 6 0.9723 3.5939 -2.7642 19 6 0.0736 4.7753 -3.0238 20 6 1.0514 3.0547 -1.4797 21 6 0.2871 3.6136 -0.4055 22 7 -0.3184 4.0577 0.4470 23 1 -0.3633 0.5943 0.8384 24 1 -0.3633 0.4290 -0.9339 25 1 -0.3633 -1.0232 0.0954 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0045 0.6968 -0.0270 29 1 3.8152 2.4415 0.2710 30 1 6.6176 1.1583 2.4209 31 1 3.2779 0.6029 -2.2164 32 1 4.2172 2.0134 -4.8143 33 1 3.4162 0.4358 -4.6203 34 1 2.6926 1.6783 -5.6695 35 1 0.6319 5.6981 -2.8660 36 1 -0.2857 4.7395 -4.0524 37 1 -0.7754 4.7430 -2.3411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157414149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:28 Heat of formation + Delta-G solvation = 41.614130 kcal Electronic energy + Delta-G solvation = -19178.996035 eV Core-core repulsion = 16341.468639 eV Total energy + Delta-G solvation = -2837.527396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.86827 -38.86761 -37.63426 -34.94518 -34.68624 -32.95423 -31.49312 -30.06098 -28.57860 -28.19378 -24.52171 -24.18046 -23.46073 -21.19270 -19.98146 -18.73641 -17.85407 -17.13612 -16.81998 -16.18100 -15.54267 -15.37667 -15.21387 -14.84824 -14.51350 -14.35184 -14.13543 -14.04053 -13.97227 -13.85283 -13.31114 -13.07150 -12.93254 -12.92009 -12.83426 -12.74807 -12.64210 -12.44486 -12.13433 -11.90030 -11.51264 -10.74354 -10.65247 -10.43282 -9.83633 -9.41271 -8.26819 -6.36690 -0.44327 0.05105 1.37386 1.39087 1.50149 1.69554 1.94724 2.34636 2.74415 2.81595 2.88393 3.06292 3.18157 3.69110 3.88821 4.03660 4.16689 4.33625 4.37029 4.47490 4.60593 4.68114 4.72985 4.76870 4.84247 4.85092 4.99513 5.00730 5.08569 5.11453 5.17900 5.21401 5.31772 5.54722 5.61630 5.97352 6.05886 6.46764 6.58555 6.76264 6.84674 7.32740 8.83398 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.006405 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.229317 B = 4370.672311 C = 4864.079790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 N -0.528 5.528 4 C 0.223 3.777 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.199 3.801 14 C -0.222 4.222 15 C 0.172 3.828 16 C -0.104 4.104 17 N -0.498 5.498 18 C 0.195 3.805 19 C -0.106 4.106 20 C -0.107 4.107 21 C 0.296 3.704 22 N -0.456 5.456 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.074 0.926 28 H -0.006 1.006 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.144 0.856 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -0.713 -14.101 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 N -0.250 5.250 4 C 0.099 3.901 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.094 3.906 14 C -0.244 4.244 15 C 0.035 3.965 16 C -0.160 4.160 17 N -0.209 5.209 18 C 0.053 3.947 19 C -0.163 4.163 20 C -0.114 4.114 21 C -0.019 4.019 22 N -0.133 5.133 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.297 0.568 -13.232 15.629 hybrid contribution 1.308 -1.074 1.447 2.227 sum -6.989 -0.507 -11.785 13.711 Atomic orbital electron populations 1.21703 0.94007 1.02439 1.01047 1.22135 0.96302 0.86251 1.01689 1.59455 1.25243 1.20525 1.19785 1.19385 0.81156 0.94552 0.94986 1.21325 0.92510 1.49194 0.93468 0.92533 1.25765 0.95001 0.94829 1.03153 1.70039 0.97979 1.50685 1.37878 0.85475 0.77520 0.78774 0.79433 1.19196 1.20587 1.19891 1.19502 0.90049 0.91093 0.89961 1.22635 1.03575 1.04566 0.93631 1.21834 0.90949 0.88969 0.94768 1.20903 0.99368 1.01887 0.93891 1.67580 1.08485 1.11881 1.32927 1.21690 0.92730 0.94731 0.85589 1.20899 0.97094 0.93243 1.05051 1.17093 1.02788 1.00148 0.91355 1.25154 0.92298 0.92150 0.92273 1.81122 1.11912 1.10868 1.09377 0.94024 0.93220 0.89763 0.93268 0.90796 0.98801 0.98604 0.92430 0.83872 0.88940 0.88838 0.88782 0.88503 0.87436 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.96 71.99 0.72 -3.43 16 2 C 0.06 2.25 5.47 86.31 0.47 2.73 16 3 N -0.53 -22.39 3.82 -698.09 -2.67 -25.06 16 4 C 0.22 11.42 4.24 85.56 0.36 11.79 16 5 C -0.53 -29.44 8.30 25.60 0.21 -29.23 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.65 5.46 84.66 0.46 1.12 16 8 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 9 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.20 7.28 4.08 39.01 0.16 7.44 16 14 C -0.22 -6.89 8.18 22.46 0.18 -6.71 16 15 C 0.17 4.46 6.77 42.41 0.29 4.74 16 16 C -0.10 -1.78 10.16 71.23 0.72 -1.06 16 17 N -0.50 -13.36 10.16 -171.32 -1.74 -15.10 16 18 C 0.19 5.40 6.82 42.89 0.29 5.69 16 19 C -0.11 -2.15 9.78 71.24 0.70 -1.45 16 20 C -0.11 -3.63 5.77 -21.07 -0.12 -3.75 16 21 C 0.30 11.03 13.39 88.33 1.18 12.21 16 22 N -0.46 -18.35 18.54 19.00 0.35 -18.00 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.45 7.87 -2.38 -0.02 1.43 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 1.60 6.99 -2.39 -0.02 1.59 16 27 H 0.07 2.99 7.12 -2.39 -0.02 2.97 16 28 H -0.01 -0.31 7.73 -2.38 -0.02 -0.33 16 29 H 0.00 -0.24 7.97 -2.39 -0.02 -0.25 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.14 4.32 7.45 -2.91 -0.02 4.30 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.33 8.07 -2.38 -0.02 1.31 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.07 1.52 7.08 -2.39 -0.02 1.51 16 Total: -1.00 -65.75 320.30 4.95 -60.80 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.06 Total: 4.75 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.63 Total: 0.09 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -3.77 Total: -111.74 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -65.75 4.95 -60.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157414149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.411 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds