Wall clock time and date at job start Mon Mar 30 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37870 * 119.39340 * 2 1 4 4 C 1.39386 * 119.22003 * 180.02562 * 3 2 1 5 5 N 1.38601 * 120.94707 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99813 * 294.13395 * 5 4 3 7 7 C 1.46899 * 111.00511 * 58.08736 * 5 4 3 8 8 H 1.09004 * 109.47108 * 295.15424 * 7 5 4 9 9 C 1.52995 * 109.47322 * 175.15331 * 7 5 4 10 10 C 1.50703 * 109.46670 * 55.15041 * 7 5 4 11 11 H 1.07996 * 120.00158 * 5.04486 * 10 7 5 12 12 C 1.37879 * 119.99644 * 185.31423 * 10 7 5 13 13 N 1.31515 * 119.99830 * 196.80934 * 12 10 7 14 14 Si 1.86804 * 120.00126 * 16.81491 * 12 10 7 15 15 H 1.48490 * 109.47292 * 95.67898 * 14 12 10 16 16 H 1.48501 * 109.46941 * 215.68241 * 14 12 10 17 17 H 1.48504 * 109.46975 * 335.67958 * 14 12 10 18 18 C 1.40929 * 118.10122 * 0.24859 * 4 3 2 19 19 C 1.43202 * 120.63669 * 179.72582 * 18 4 3 20 20 N 4.81811 * 134.65761 * 0.27838 * 3 1 2 21 21 C 1.39502 * 118.73402 * 359.48859 * 18 4 3 22 22 C 1.50698 * 119.69106 * 180.29200 * 21 18 4 23 23 N 1.31699 * 120.61715 * 0.52705 * 21 18 4 24 24 H 1.09000 * 109.47227 * 90.00251 * 1 2 3 25 25 H 1.09007 * 109.46886 * 209.99618 * 1 2 3 26 26 H 1.08994 * 109.47049 * 329.99870 * 1 2 3 27 27 H 1.08007 * 120.38679 * 359.97438 * 3 2 1 28 28 H 1.09009 * 109.47096 * 183.95699 * 6 5 4 29 29 H 1.08999 * 109.47084 * 303.95173 * 6 5 4 30 30 H 1.09000 * 109.47650 * 63.95998 * 6 5 4 31 31 H 1.09006 * 109.47035 * 302.03774 * 9 7 5 32 32 H 1.08995 * 109.47198 * 62.04054 * 9 7 5 33 33 H 1.08996 * 109.47042 * 182.04074 * 9 7 5 34 34 H 0.96996 * 119.99843 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47043 * 270.22969 * 22 21 18 36 36 H 1.08995 * 109.47502 * 30.23214 * 22 21 18 37 37 H 1.09005 * 109.47251 * 150.23600 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2012 0.0000 4 6 3.5775 1.1970 -0.0005 5 7 4.2938 2.3835 -0.0011 6 6 4.0854 3.1237 -1.2528 7 6 3.9458 3.2093 1.1630 8 1 2.9020 3.5152 1.0924 9 6 4.8400 4.4503 1.1936 10 6 4.1511 2.4108 2.4245 11 1 4.5812 1.4215 2.3735 12 6 3.7845 2.9412 3.6433 13 7 4.2491 2.4155 4.7557 14 14 2.6280 4.4064 3.7145 15 1 1.2368 3.9294 3.9194 16 1 3.0189 5.2913 4.8412 17 1 2.7090 5.1634 2.4395 18 6 4.2375 -0.0481 -0.0065 19 6 5.6680 -0.1158 -0.0132 20 7 6.8027 -0.1694 -0.0167 21 6 3.4709 -1.2136 -0.0006 22 6 4.1544 -2.5567 -0.0001 23 7 2.1554 -1.1511 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6400 2.1345 -0.0004 28 1 4.7126 4.0152 -1.2565 29 1 4.3506 2.4894 -2.0985 30 1 3.0383 3.4160 -1.3321 31 1 5.8856 4.1440 1.2277 32 1 4.6650 5.0464 0.2980 33 1 4.6066 5.0446 2.0770 34 1 3.9910 2.7883 5.6131 35 1 4.3188 -2.8811 -1.0276 36 1 5.1126 -2.4766 0.5133 37 1 3.5262 -3.2839 0.5144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157432459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:59 Heat of formation + Delta-G solvation = 52.199209 kcal Electronic energy + Delta-G solvation = -19650.139505 eV Core-core repulsion = 16813.071113 eV Total energy + Delta-G solvation = -2837.068392 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79594 -39.01600 -37.59417 -34.99343 -34.62106 -33.11699 -31.13533 -30.01299 -28.36842 -27.78353 -26.16581 -23.41509 -23.33443 -20.98654 -19.90109 -18.99627 -17.89410 -17.50069 -16.35288 -16.10085 -15.58844 -15.27293 -15.02525 -14.94219 -14.45433 -14.43991 -14.05634 -14.01184 -13.97007 -13.82815 -13.44381 -13.30749 -12.97573 -12.87646 -12.77724 -12.65243 -12.58314 -12.37989 -12.25277 -11.55118 -11.29663 -10.68166 -10.60438 -10.32171 -9.73801 -9.36799 -8.31460 -6.30937 -0.33616 0.19307 1.33647 1.36747 1.46037 1.72556 2.00827 2.33486 2.73782 2.82537 3.02869 3.04036 3.25679 3.76505 4.00523 4.10383 4.37944 4.43219 4.45409 4.51177 4.59839 4.68890 4.70959 4.72641 4.73815 4.86990 4.87650 4.95429 5.07421 5.11632 5.15308 5.23306 5.41718 5.61494 5.68091 5.85654 6.32937 6.49613 6.56457 6.74195 6.93547 7.31545 8.85720 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.008679 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.192088 B = 3225.431180 C = 3583.599947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.163 3.837 3 C -0.216 4.216 4 C 0.229 3.771 5 N -0.532 5.532 6 C 0.026 3.974 7 C 0.198 3.802 8 H 0.018 0.982 9 C -0.136 4.136 10 C -0.517 4.517 11 H 0.026 0.974 12 C 0.023 3.977 13 N -0.939 5.939 14 Si 0.926 3.074 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.223 1.223 18 C -0.112 4.112 19 C 0.300 3.700 20 N -0.465 5.465 21 C 0.187 3.813 22 C -0.105 4.105 23 N -0.504 5.504 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 -1.448 -13.176 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.026 3.974 3 C -0.238 4.238 4 C 0.124 3.876 5 N -0.254 5.254 6 C -0.119 4.119 7 C 0.092 3.908 8 H 0.035 0.965 9 C -0.194 4.194 10 C -0.555 4.555 11 H 0.045 0.955 12 C -0.176 4.176 13 N -0.578 5.578 14 Si 0.749 3.251 15 H -0.197 1.197 16 H -0.215 1.215 17 H -0.146 1.146 18 C -0.119 4.119 19 C -0.015 4.015 20 N -0.141 5.141 21 C 0.045 3.955 22 C -0.162 4.162 23 N -0.215 5.215 24 H 0.124 0.876 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.169 0.831 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.890 -2.347 -12.971 15.362 hybrid contribution -0.571 1.553 0.968 1.917 sum -8.461 -0.794 -12.003 14.707 Atomic orbital electron populations 1.20875 0.85670 1.04515 1.04795 1.21852 0.98867 0.87218 0.89423 1.22525 0.93982 1.00948 1.06383 1.19023 0.90800 0.90461 0.87320 1.59257 1.56827 1.04400 1.04884 1.22554 1.01305 0.98907 0.89173 1.19617 0.93936 0.90560 0.86691 0.96484 1.22074 0.99975 0.96848 1.00488 1.20985 1.41509 1.02189 0.90837 0.95532 1.25735 0.97093 1.00023 0.94770 1.70146 1.43938 1.44996 0.98686 0.86144 0.79444 0.79808 0.79716 1.19732 1.21530 1.14558 1.17101 0.85435 0.95046 1.14348 1.25229 0.92353 0.91677 0.92227 1.81070 1.12610 1.09568 1.10863 1.21603 0.89221 0.94594 0.90125 1.20854 0.99420 0.91027 1.04866 1.67510 1.08055 1.29272 1.16676 0.87627 0.89876 0.89398 0.83074 0.89554 0.90935 0.93264 0.94262 0.91458 0.93586 0.92571 0.87499 0.91910 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.16 71.23 0.72 -1.27 16 2 C 0.16 4.75 6.77 42.43 0.29 5.03 16 3 C -0.22 -6.95 8.38 22.46 0.19 -6.76 16 4 C 0.23 8.62 3.41 39.01 0.13 8.75 16 5 N -0.53 -20.62 4.07 -698.75 -2.84 -23.46 16 6 C 0.03 0.74 8.98 127.69 1.15 1.89 16 7 C 0.20 8.54 1.28 44.17 0.06 8.59 16 8 H 0.02 0.72 5.75 -2.39 -0.01 0.70 16 9 C -0.14 -5.42 8.29 71.98 0.60 -4.83 16 10 C -0.52 -28.41 8.37 25.60 0.21 -28.20 16 11 H 0.03 1.70 7.42 -2.91 -0.02 1.67 16 12 C 0.02 1.26 5.33 84.66 0.45 1.71 16 13 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 14 Si 0.93 40.84 25.83 68.60 1.77 42.61 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.22 -8.56 5.58 99.48 0.56 -8.00 16 18 C -0.11 -4.27 5.58 -21.07 -0.12 -4.39 16 19 C 0.30 12.39 13.39 88.33 1.18 13.57 16 20 N -0.46 -20.38 18.54 19.00 0.35 -20.03 16 21 C 0.19 6.13 6.82 42.88 0.29 6.42 16 22 C -0.10 -2.69 9.77 71.24 0.70 -1.99 16 23 N -0.50 -15.79 10.16 -171.31 -1.74 -17.53 16 24 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.09 1.55 8.07 -2.39 -0.02 1.53 16 27 H 0.15 4.25 7.23 -2.91 -0.02 4.23 16 28 H 0.09 2.27 6.37 -2.38 -0.02 2.26 16 29 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 30 H 0.05 1.20 7.65 -2.39 -0.02 1.18 16 31 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.07 2.13 6.53 -2.39 -0.02 2.11 16 33 H 0.05 1.87 5.21 -2.39 -0.01 1.86 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 1.76 7.09 -2.39 -0.02 1.74 16 37 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -70.34 307.35 4.62 -65.72 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.93 Total: 11.70 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.85 Total: -1.46 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -3.93 Total: -118.58 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.77 Total: 42.61 kcal Total: -70.34 4.62 -65.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157432459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.916 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds