Wall clock time and date at job start Mon Mar 30 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37910 * 119.49362 * 2 1 4 4 C 1.40095 * 119.15779 * 180.02562 * 3 2 1 5 5 C 1.43202 * 120.88699 * 179.97438 * 4 3 2 6 6 N 4.80790 * 135.19282 * 359.97438 * 2 1 3 7 7 C 1.39651 * 118.22322 * 0.02562 * 4 3 2 8 8 C 1.38981 * 118.92561 * 359.97438 * 7 4 3 9 9 N 1.39030 * 119.64211 * 180.02562 * 8 7 4 10 10 C 1.46507 * 120.00138 * 191.74805 * 9 8 7 11 11 C 1.50699 * 109.46988 * 270.27284 * 10 9 8 12 12 H 1.08000 * 119.99925 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99754 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99832 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00152 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46847 * 90.00277 * 15 13 11 17 17 H 1.48509 * 109.46944 * 209.99823 * 15 13 11 18 18 H 1.48498 * 109.47245 * 330.00029 * 15 13 11 19 19 C 1.46495 * 120.00208 * 12.01762 * 9 8 7 20 20 C 1.52998 * 109.47099 * 116.80749 * 19 9 8 21 21 C 1.52995 * 109.47660 * 236.80996 * 19 9 8 22 22 N 1.31926 * 119.49617 * 180.28924 * 2 1 3 23 23 H 1.09003 * 109.46868 * 90.00094 * 1 2 3 24 24 H 1.09002 * 109.46911 * 209.99815 * 1 2 3 25 25 H 1.08997 * 109.47494 * 330.00172 * 1 2 3 26 26 H 1.08002 * 120.42308 * 0.04209 * 3 2 1 27 27 H 1.08006 * 120.54137 * 179.97438 * 7 4 3 28 28 H 1.08998 * 109.46704 * 30.27545 * 10 9 8 29 29 H 1.09000 * 109.46927 * 150.27380 * 10 9 8 30 30 H 0.97002 * 119.99747 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.46950 * 356.81597 * 19 9 8 32 32 H 1.09003 * 109.47042 * 65.31729 * 20 19 9 33 33 H 1.09004 * 109.47057 * 185.31594 * 20 19 9 34 34 H 1.09005 * 109.47557 * 305.31402 * 20 19 9 35 35 H 1.09004 * 109.47219 * 54.21411 * 21 19 9 36 36 H 1.09003 * 109.47380 * 174.21036 * 21 19 9 37 37 H 1.08997 * 109.47328 * 294.21332 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.2004 0.0000 4 6 3.5869 1.1922 -0.0005 5 6 4.3292 2.4168 -0.0011 6 7 4.9181 3.3882 -0.0015 7 6 4.2401 -0.0422 -0.0016 8 6 3.4794 -1.2053 -0.0016 9 7 4.1142 -2.4422 -0.0021 10 6 3.3435 -3.6611 -0.2604 11 6 2.8169 -4.2077 1.0415 12 1 3.0348 -3.6983 1.9686 13 6 2.0569 -5.3580 1.0490 14 7 1.5968 -5.8347 2.1851 15 14 1.6793 -6.2385 -0.5546 16 1 2.7413 -7.2387 -0.8320 17 1 0.3679 -6.9266 -0.4446 18 1 1.6286 -5.2503 -1.6619 19 6 5.5528 -2.5273 0.2615 20 6 5.7898 -3.3261 1.5447 21 6 6.2455 -3.2266 -0.9098 22 7 2.1566 -1.1483 -0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6446 2.1349 0.0007 27 1 5.3190 -0.0922 -0.0025 28 1 2.5085 -3.4296 -0.9216 29 1 3.9862 -4.4039 -0.7329 30 1 1.0624 -6.6442 2.1904 31 1 5.9608 -1.5232 0.3780 32 1 5.4673 -4.3566 1.3959 33 1 6.8512 -3.3096 1.7921 34 1 5.2197 -2.8811 2.3603 35 1 5.9923 -2.7159 -1.8390 36 1 7.3252 -3.1988 -0.7626 37 1 5.9125 -4.2631 -0.9625 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160927145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:10 Heat of formation + Delta-G solvation = 74.021704 kcal Electronic energy + Delta-G solvation = -19158.732525 eV Core-core repulsion = 16322.610427 eV Total energy + Delta-G solvation = -2836.122098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15827 -37.39795 -36.53669 -32.96125 -32.70336 -32.41943 -30.19597 -28.26454 -26.79809 -26.46721 -24.10701 -22.50205 -22.08101 -19.32642 -18.11392 -16.83447 -16.42555 -16.18316 -15.49378 -14.67938 -14.31512 -13.91566 -13.77545 -13.48271 -13.21853 -13.17924 -12.91995 -12.76927 -12.48406 -12.18201 -12.01027 -11.82066 -11.72826 -11.71213 -11.29790 -11.06788 -10.88863 -10.48147 -10.31275 -10.17939 -9.60396 -9.38109 -9.02864 -8.90433 -8.56041 -6.92393 -6.05418 -4.01703 0.97554 1.62827 2.60789 3.18922 3.25863 3.33882 3.37421 3.50962 3.88295 4.25591 4.40696 4.74162 5.09663 5.23091 5.27670 5.33218 5.37545 5.48562 5.53292 5.72293 5.80812 5.87784 5.92110 6.02584 6.12255 6.18624 6.28687 6.31973 6.36175 6.51998 6.67091 6.79831 6.96292 6.99828 7.41709 7.63277 7.67942 8.03371 8.53045 8.71906 9.01037 9.55309 11.07975 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.007085 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.389609 B = 3951.301422 C = 4894.404138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.186 3.814 3 C -0.214 4.214 4 C 0.054 3.946 5 C 0.268 3.732 6 N -0.423 5.423 7 C -0.218 4.218 8 C 0.429 3.571 9 N -0.576 5.576 10 C 0.225 3.775 11 C -0.512 4.512 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.900 5.900 15 Si 0.868 3.132 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.145 3.855 20 C -0.156 4.156 21 C -0.162 4.162 22 N -0.499 5.499 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.039 0.961 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 8.727 -5.762 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.045 3.955 3 C -0.239 4.239 4 C 0.043 3.957 5 C -0.048 4.048 6 N -0.099 5.099 7 C -0.247 4.247 8 C 0.192 3.808 9 N -0.284 5.284 10 C 0.105 3.895 11 C -0.550 4.550 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.696 3.304 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.190 1.190 19 C 0.041 3.959 20 C -0.214 4.214 21 C -0.220 4.220 22 N -0.217 5.217 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.154 0.846 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.029 9.052 -5.702 11.432 hybrid contribution -0.025 -0.267 -0.629 0.684 sum 4.004 8.785 -6.331 11.545 Atomic orbital electron populations 1.20736 0.88830 1.03683 1.02960 1.20890 0.96652 0.86825 0.91148 1.21455 0.91916 0.99594 1.10978 1.15810 0.92023 0.86487 1.01397 1.25680 0.92927 0.92735 0.93445 1.81209 1.08996 1.11032 1.08673 1.21378 1.00670 0.90515 1.12151 1.18136 0.87859 0.85829 0.88971 1.46950 1.06705 1.03732 1.70971 1.19639 0.90966 0.81196 0.97742 1.21325 1.31691 1.08837 0.93178 0.90590 1.24824 0.95410 0.97051 0.95713 1.69897 1.36169 1.22515 1.25306 0.86973 0.78148 0.80271 0.85037 1.20400 1.21160 1.18952 1.21034 0.80042 0.99528 0.95326 1.22160 0.99727 1.02727 0.96775 1.22186 0.99792 1.02006 0.98065 1.67204 1.07937 1.28800 1.17755 0.90480 0.89762 0.90903 0.85040 0.84646 0.94301 0.95823 0.92771 0.90341 0.90378 0.93186 0.92224 0.92624 0.91973 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.16 36.01 0.37 -0.93 16 2 C 0.19 2.89 6.77 -82.67 -0.56 2.33 16 3 C -0.21 -2.86 9.48 -39.01 -0.37 -3.23 16 4 C 0.05 0.75 5.75 -106.75 -0.61 0.14 16 5 C 0.27 3.73 15.40 -22.47 -0.35 3.38 16 6 N -0.42 -6.44 18.54 41.84 0.78 -5.67 16 7 C -0.22 -3.30 9.04 -38.78 -0.35 -3.65 16 8 C 0.43 7.86 7.31 -155.05 -1.13 6.73 16 9 N -0.58 -10.94 2.50 -167.66 -0.42 -11.36 16 10 C 0.23 5.03 3.70 -5.19 -0.02 5.01 16 11 C -0.51 -13.49 8.55 -34.44 -0.29 -13.79 16 12 H 0.08 2.24 7.73 -52.49 -0.41 1.84 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 15 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 19 C 0.14 2.24 3.17 -67.94 -0.22 2.03 16 20 C -0.16 -2.55 8.38 37.16 0.31 -2.24 16 21 C -0.16 -2.18 8.97 37.15 0.33 -1.85 16 22 N -0.50 -9.63 9.16 -8.73 -0.08 -9.71 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.14 1.78 5.88 -52.48 -0.31 1.47 16 28 H 0.04 0.93 6.64 -51.93 -0.34 0.58 16 29 H 0.02 0.52 5.83 -51.93 -0.30 0.21 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.08 1.05 5.37 -51.93 -0.28 0.77 16 32 H 0.08 1.48 7.30 -51.93 -0.38 1.10 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.98 6.84 -51.93 -0.36 0.62 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -30.03 313.32 -6.80 -36.83 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.91 Total: -0.61 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.99 Total: -4.21 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 1.05 Total: -52.57 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.03 -6.80 -36.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160927145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.849 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds