Wall clock time and date at job start Mon Mar 30 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37910 * 119.49362 * 2 1 4 4 C 1.40095 * 119.15779 * 180.02562 * 3 2 1 5 5 C 1.43202 * 120.88699 * 179.97438 * 4 3 2 6 6 N 4.80790 * 135.19282 * 359.97438 * 2 1 3 7 7 C 1.39651 * 118.22322 * 0.02562 * 4 3 2 8 8 C 1.38981 * 118.92561 * 359.97438 * 7 4 3 9 9 N 1.39030 * 119.64211 * 180.02562 * 8 7 4 10 10 C 1.46507 * 120.00138 * 191.74805 * 9 8 7 11 11 C 1.50699 * 109.46988 * 270.27284 * 10 9 8 12 12 H 1.08000 * 119.99925 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99754 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99832 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00152 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46847 * 90.00277 * 15 13 11 17 17 H 1.48509 * 109.46944 * 209.99823 * 15 13 11 18 18 H 1.48498 * 109.47245 * 330.00029 * 15 13 11 19 19 C 1.46495 * 120.00208 * 12.01762 * 9 8 7 20 20 C 1.52998 * 109.47099 * 116.80749 * 19 9 8 21 21 C 1.52995 * 109.47660 * 236.80996 * 19 9 8 22 22 N 1.31926 * 119.49617 * 180.28924 * 2 1 3 23 23 H 1.09003 * 109.46868 * 90.00094 * 1 2 3 24 24 H 1.09002 * 109.46911 * 209.99815 * 1 2 3 25 25 H 1.08997 * 109.47494 * 330.00172 * 1 2 3 26 26 H 1.08002 * 120.42308 * 0.04209 * 3 2 1 27 27 H 1.08006 * 120.54137 * 179.97438 * 7 4 3 28 28 H 1.08998 * 109.46704 * 30.27545 * 10 9 8 29 29 H 1.09000 * 109.46927 * 150.27380 * 10 9 8 30 30 H 0.97002 * 119.99747 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.46950 * 356.81597 * 19 9 8 32 32 H 1.09003 * 109.47042 * 65.31729 * 20 19 9 33 33 H 1.09004 * 109.47057 * 185.31594 * 20 19 9 34 34 H 1.09005 * 109.47557 * 305.31402 * 20 19 9 35 35 H 1.09004 * 109.47219 * 54.21411 * 21 19 9 36 36 H 1.09003 * 109.47380 * 174.21036 * 21 19 9 37 37 H 1.08997 * 109.47328 * 294.21332 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.2004 0.0000 4 6 3.5869 1.1922 -0.0005 5 6 4.3292 2.4168 -0.0011 6 7 4.9181 3.3882 -0.0015 7 6 4.2401 -0.0422 -0.0016 8 6 3.4794 -1.2053 -0.0016 9 7 4.1142 -2.4422 -0.0021 10 6 3.3435 -3.6611 -0.2604 11 6 2.8169 -4.2077 1.0415 12 1 3.0348 -3.6983 1.9686 13 6 2.0569 -5.3580 1.0490 14 7 1.5968 -5.8347 2.1851 15 14 1.6793 -6.2385 -0.5546 16 1 2.7413 -7.2387 -0.8320 17 1 0.3679 -6.9266 -0.4446 18 1 1.6286 -5.2503 -1.6619 19 6 5.5528 -2.5273 0.2615 20 6 5.7898 -3.3261 1.5447 21 6 6.2455 -3.2266 -0.9098 22 7 2.1566 -1.1483 -0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6446 2.1349 0.0007 27 1 5.3190 -0.0922 -0.0025 28 1 2.5085 -3.4296 -0.9216 29 1 3.9862 -4.4039 -0.7329 30 1 1.0624 -6.6442 2.1904 31 1 5.9608 -1.5232 0.3780 32 1 5.4673 -4.3566 1.3959 33 1 6.8512 -3.3096 1.7921 34 1 5.2197 -2.8811 2.3603 35 1 5.9923 -2.7159 -1.8390 36 1 7.3252 -3.1988 -0.7626 37 1 5.9125 -4.2631 -0.9625 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160927145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:09 Heat of formation + Delta-G solvation = 57.121122 kcal Electronic energy + Delta-G solvation = -19159.465389 eV Core-core repulsion = 16322.610427 eV Total energy + Delta-G solvation = -2836.854962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41006 -38.71251 -37.71855 -34.79688 -33.87615 -33.85467 -31.73202 -29.72299 -28.02256 -27.79788 -25.44890 -23.81813 -23.69336 -20.60527 -19.39131 -18.90345 -17.72047 -17.46730 -16.67157 -16.34399 -15.71709 -15.32916 -15.03843 -14.72622 -14.56538 -14.38679 -14.26951 -14.04675 -13.95071 -13.48217 -13.36066 -13.20379 -12.98983 -12.86985 -12.64936 -12.60131 -12.35894 -12.11624 -11.88920 -11.64080 -11.40823 -10.81943 -10.67620 -10.33946 -10.20108 -8.30216 -8.18014 -6.18306 -0.19833 0.42782 1.37719 1.41145 1.48125 1.50976 2.03247 2.20917 2.40690 2.70918 3.03571 3.16429 3.56288 3.94706 4.08241 4.14112 4.28154 4.31250 4.38310 4.58772 4.69102 4.83075 4.86221 4.92361 4.95430 5.00645 5.04397 5.06197 5.15740 5.18537 5.26834 5.42472 5.53361 5.63287 5.70149 6.14577 6.30430 6.47020 6.67862 6.83501 7.40374 7.47767 8.98414 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.007085 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.389609 B = 3951.301422 C = 4894.404138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.168 3.832 3 C -0.191 4.191 4 C 0.057 3.943 5 C 0.288 3.712 6 N -0.440 5.440 7 C -0.209 4.209 8 C 0.403 3.597 9 N -0.591 5.591 10 C 0.241 3.759 11 C -0.497 4.497 12 H 0.029 0.971 13 C 0.010 3.990 14 N -0.952 5.952 15 Si 0.936 3.064 16 H -0.264 1.264 17 H -0.288 1.288 18 H -0.251 1.251 19 C 0.140 3.860 20 C -0.148 4.148 21 C -0.155 4.155 22 N -0.547 5.547 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.025 0.975 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 10.592 -7.680 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.028 3.972 3 C -0.216 4.216 4 C 0.046 3.954 5 C -0.028 4.028 6 N -0.116 5.116 7 C -0.238 4.238 8 C 0.167 3.833 9 N -0.301 5.301 10 C 0.119 3.881 11 C -0.536 4.536 12 H 0.048 0.952 13 C -0.186 4.186 14 N -0.594 5.594 15 Si 0.760 3.240 16 H -0.189 1.189 17 H -0.215 1.215 18 H -0.175 1.175 19 C 0.037 3.963 20 C -0.207 4.207 21 C -0.213 4.213 22 N -0.265 5.265 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.185 0.815 27 H 0.174 0.826 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.936 10.971 -7.633 14.247 hybrid contribution -0.320 -0.683 0.065 0.757 sum 4.616 10.287 -7.567 13.579 Atomic orbital electron populations 1.20821 0.87011 1.03970 1.04106 1.21407 0.97981 0.86626 0.91148 1.21792 0.91779 1.00203 1.07842 1.15807 0.92343 0.86132 1.01166 1.25382 0.92368 0.92198 0.92806 1.81252 1.09464 1.11583 1.09284 1.21456 1.01506 0.89738 1.11054 1.18410 0.88084 0.86407 0.90366 1.46895 1.07732 1.02958 1.72502 1.19185 0.91087 0.82957 0.94906 1.21486 1.30716 1.08028 0.93419 0.95240 1.25692 0.95550 0.98197 0.99207 1.70066 1.37942 1.23441 1.27937 0.85886 0.77933 0.79303 0.80844 1.18938 1.21451 1.17459 1.21294 0.78594 1.00998 0.95374 1.22082 1.01342 1.00517 0.96736 1.22135 1.01390 1.00524 0.97295 1.67139 1.09058 1.31281 1.19060 0.88841 0.92398 0.87629 0.81496 0.82608 0.95658 0.94757 0.92907 0.87680 0.93705 0.89624 0.95250 0.91969 0.88868 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 10.16 71.24 0.72 -1.65 16 2 C 0.17 4.99 6.77 42.47 0.29 5.28 16 3 C -0.19 -4.54 9.48 22.64 0.21 -4.33 16 4 C 0.06 1.43 5.75 -21.24 -0.12 1.30 16 5 C 0.29 7.11 15.40 88.33 1.36 8.47 16 6 N -0.44 -12.13 18.54 19.01 0.35 -11.78 16 7 C -0.21 -5.91 9.04 22.79 0.21 -5.70 16 8 C 0.40 14.58 7.31 133.02 0.97 15.55 16 9 N -0.59 -22.47 2.50 -684.35 -1.71 -24.19 16 10 C 0.24 10.93 3.70 85.63 0.32 11.25 16 11 C -0.50 -27.43 8.55 25.60 0.22 -27.21 16 12 H 0.03 1.86 7.73 -2.91 -0.02 1.83 16 13 C 0.01 0.57 5.47 84.65 0.46 1.03 16 14 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 15 Si 0.94 43.11 27.47 68.60 1.88 45.00 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 19 C 0.14 4.17 3.17 44.99 0.14 4.32 16 20 C -0.15 -4.91 8.38 71.98 0.60 -4.31 16 21 C -0.16 -3.83 8.97 71.98 0.65 -3.18 16 22 N -0.55 -21.15 9.16 -181.55 -1.66 -22.81 16 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.11 1.71 8.07 -2.39 -0.02 1.69 16 26 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.16 3.63 5.88 -2.91 -0.02 3.61 16 28 H 0.03 1.22 6.64 -2.39 -0.02 1.20 16 29 H 0.03 1.49 5.83 -2.39 -0.01 1.47 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.11 2.54 5.37 -2.39 -0.01 2.52 16 32 H 0.04 1.75 7.30 -2.39 -0.02 1.73 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.03 1.11 8.02 -2.38 -0.02 1.09 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.36 6.84 -2.39 -0.02 1.34 16 Total: -1.00 -68.95 313.32 6.21 -62.74 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.02 Total: 8.80 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.03 Total: 0.81 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -2.73 Total: -117.35 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -68.95 6.21 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160927145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.863 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds