Wall clock time and date at job start Mon Mar 30 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21310 * 119.99987 * 2 1 4 4 C 1.46758 * 120.00176 * 179.97438 * 2 1 3 5 5 C 1.40131 * 120.23950 * 0.02562 * 4 2 1 6 6 C 1.36317 * 120.09381 * 180.39255 * 5 4 2 7 7 C 1.39870 * 120.43470 * 359.48401 * 6 5 4 8 8 C 1.39418 * 119.32570 * 0.27670 * 7 6 5 9 9 C 1.36346 * 120.68993 * 0.06675 * 8 7 6 10 10 C 1.51624 * 107.85126 * 180.27393 * 8 7 6 11 11 C 1.54602 * 102.70911 * 16.00306 * 10 8 7 12 12 N 1.39306 * 129.70584 * 179.70849 * 7 6 5 13 13 C 1.46891 * 111.00522 * 284.03033 * 12 7 6 14 14 C 1.53005 * 109.46974 * 69.81710 * 13 12 7 15 15 C 1.50699 * 109.47210 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00059 * 0.02562 * 15 14 13 17 17 C 1.37867 * 120.00321 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99814 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00484 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46891 * 90.00216 * 19 17 15 21 21 H 1.48501 * 109.47126 * 210.00334 * 19 17 15 22 22 H 1.48497 * 109.46672 * 330.00447 * 19 17 15 23 23 H 1.08994 * 109.47407 * 239.99954 * 1 2 3 24 24 H 1.08999 * 109.47109 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46767 * 120.00202 * 1 2 3 26 26 H 1.08002 * 119.94944 * 0.10826 * 5 4 2 27 27 H 1.08005 * 119.78561 * 179.74279 * 6 5 4 28 28 H 1.08005 * 120.03376 * 179.81829 * 9 8 7 29 29 H 1.08996 * 110.76289 * 134.30876 * 10 8 7 30 30 H 1.08999 * 110.76278 * 257.70118 * 10 8 7 31 31 H 1.09001 * 110.77552 * 92.71983 * 11 10 8 32 32 H 1.09003 * 110.77798 * 216.14355 * 11 10 8 33 33 H 1.08999 * 109.47151 * 189.81771 * 13 12 7 34 34 H 1.09003 * 109.47214 * 309.81570 * 13 12 7 35 35 H 1.08992 * 109.46886 * 299.99931 * 14 13 12 36 36 H 1.09001 * 109.46815 * 60.00162 * 14 13 12 37 37 H 0.97001 * 120.00084 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2408 -1.2709 0.0006 5 6 1.5452 -2.4874 0.0006 6 6 2.2298 -3.6662 0.0092 7 6 3.6285 -3.6733 0.0072 8 6 4.3175 -2.4612 0.0022 9 6 3.6420 -1.2768 0.0006 10 6 5.8018 -2.7704 -0.0058 11 6 5.8369 -4.2593 -0.4204 12 7 4.5131 -4.7494 0.0201 13 6 4.5925 -5.3496 1.3585 14 6 3.2767 -6.0626 1.6766 15 6 3.3584 -6.6789 3.0494 16 1 4.2586 -6.5723 3.6365 17 6 2.2836 -7.3778 3.5563 18 7 1.1871 -7.5071 2.8417 19 14 2.3845 -8.1412 5.2583 20 1 1.9074 -7.1631 6.2686 21 1 1.5339 -9.3575 5.3065 22 1 3.7926 -8.5099 5.5526 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 0.4652 -2.4910 -0.0016 27 1 1.6887 -4.6009 0.0133 28 1 4.1865 -0.3440 -0.0003 29 1 6.3212 -2.1529 -0.7386 30 1 6.2299 -2.6356 0.9875 31 1 5.9457 -4.3575 -1.5005 32 1 6.6369 -4.7867 0.0994 33 1 5.4113 -6.0686 1.3862 34 1 4.7702 -4.5680 2.0972 35 1 2.4580 -5.3436 1.6489 36 1 3.0991 -6.8441 0.9378 37 1 0.4310 -7.9992 3.1982 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162322038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:18 Heat of formation + Delta-G solvation = -24.735878 kcal Electronic energy + Delta-G solvation = -18858.108431 eV Core-core repulsion = 15985.411131 eV Total energy + Delta-G solvation = -2872.697299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99159 -40.30663 -37.62633 -35.58429 -33.80321 -32.08699 -31.64390 -29.66097 -29.39821 -26.53282 -24.47717 -23.70630 -22.51253 -21.89748 -20.35851 -18.53604 -17.71600 -17.14497 -17.09022 -16.53795 -16.31460 -15.88439 -15.76366 -15.27364 -14.80981 -14.50849 -14.22355 -13.98992 -13.84712 -13.43965 -13.23931 -13.13940 -12.99969 -12.93346 -12.79392 -12.60287 -12.27613 -12.01906 -11.84484 -11.36831 -11.26105 -10.79769 -10.55171 -10.36094 -9.91823 -8.89641 -8.19647 -6.30129 -0.39463 0.42026 1.37349 1.41115 1.41529 1.52397 2.39357 2.65503 2.83274 3.14401 3.15066 3.57585 3.80648 4.02181 4.04036 4.12145 4.25106 4.35319 4.41158 4.47446 4.55427 4.69180 4.71122 4.72916 4.79627 4.96310 4.99667 5.06676 5.15524 5.27890 5.37079 5.39040 5.47877 5.59641 5.73732 5.77814 6.03401 6.19039 6.31636 6.54326 6.85144 7.38371 8.92210 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.005601 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.634341 B = 4998.267942 C = 5994.161405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.404 3.596 3 O -0.507 6.507 4 C -0.209 4.209 5 C -0.042 4.042 6 C -0.141 4.141 7 C 0.127 3.873 8 C -0.169 4.169 9 C -0.040 4.040 10 C -0.100 4.100 11 C 0.046 3.954 12 N -0.515 5.515 13 C 0.083 3.917 14 C 0.028 3.972 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.264 1.264 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.165 0.835 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.010 0.990 36 H -0.007 1.007 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 11.294 -6.799 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.287 3.713 3 O -0.387 6.387 4 C -0.211 4.211 5 C -0.061 4.061 6 C -0.161 4.161 7 C 0.029 3.971 8 C -0.172 4.172 9 C -0.058 4.058 10 C -0.138 4.138 11 C -0.080 4.080 12 N -0.231 5.231 13 C -0.041 4.041 14 C -0.009 4.009 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.188 1.188 23 H 0.128 0.872 24 H 0.108 0.892 25 H 0.135 0.865 26 H 0.182 0.818 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.028 0.972 36 H 0.012 0.988 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.974 11.278 -7.120 13.665 hybrid contribution 0.032 -0.337 1.292 1.335 sum 3.006 10.942 -5.828 12.756 Atomic orbital electron populations 1.22283 0.90483 1.05972 1.06456 1.22791 0.93339 0.86300 0.68918 1.90504 1.73359 1.35259 1.39558 1.20532 0.94145 0.95331 1.11047 1.21190 1.01393 0.89726 0.93742 1.20572 0.92153 0.99410 1.03956 1.20108 0.93477 0.90075 0.93482 1.21005 0.97521 0.93146 1.05525 1.20448 0.93429 0.97208 0.94758 1.21718 0.90836 0.97656 1.03572 1.23361 0.89018 0.93088 1.02539 1.59846 1.08675 1.28072 1.26546 1.22153 1.00376 0.96681 0.84934 1.19069 0.92548 0.94489 0.94787 1.21557 1.00425 1.34088 1.02265 0.92363 1.25855 0.94961 0.96673 1.01655 1.70083 1.04911 1.42521 1.39134 0.85507 0.78481 0.77946 0.79478 1.19965 1.20695 1.18825 0.87199 0.89200 0.86526 0.81779 0.86575 0.84923 0.87177 0.89711 0.88159 0.88158 0.90262 0.95628 0.97175 0.98836 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.16 8.93 71.23 0.64 -2.53 16 2 C 0.40 10.32 7.21 27.91 0.20 10.52 16 3 O -0.51 -16.13 17.08 -3.12 -0.05 -16.18 16 4 C -0.21 -5.92 5.87 -20.13 -0.12 -6.04 16 5 C -0.04 -1.19 9.40 22.28 0.21 -0.98 16 6 C -0.14 -5.03 8.45 22.22 0.19 -4.84 16 7 C 0.13 4.54 5.28 38.63 0.20 4.75 16 8 C -0.17 -5.22 6.17 -19.73 -0.12 -5.34 16 9 C -0.04 -1.18 9.54 22.29 0.21 -0.97 16 10 C -0.10 -2.43 6.98 30.69 0.21 -2.22 16 11 C 0.05 1.20 6.99 86.66 0.61 1.80 16 12 N -0.51 -18.61 5.03 -688.54 -3.47 -22.07 16 13 C 0.08 3.42 4.69 86.31 0.40 3.83 16 14 C 0.03 1.48 4.81 29.85 0.14 1.62 16 15 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 16 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -55.02 13.29 21.44 0.28 -54.74 16 19 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H 0.11 1.51 8.09 -2.39 -0.02 1.49 16 24 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 25 H 0.12 1.39 8.08 -2.38 -0.02 1.37 16 26 H 0.16 3.44 7.05 -2.91 -0.02 3.42 16 27 H 0.12 4.63 7.11 -2.91 -0.02 4.61 16 28 H 0.13 3.69 7.65 -2.91 -0.02 3.67 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.29 7.60 -2.39 -0.02 2.27 16 33 H 0.08 3.09 7.84 -2.39 -0.02 3.07 16 34 H 0.03 1.06 8.06 -2.39 -0.02 1.05 16 35 H 0.01 0.55 5.51 -2.39 -0.01 0.54 16 36 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.64 308.89 3.33 -65.31 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.06 Total: 11.94 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.48 Total: -29.77 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.18 Total: -76.81 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.05 Total: -16.18 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.64 3.33 -65.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162322038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.574 kcal (2) G-P(sol) polarization free energy of solvation -68.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds