Wall clock time and date at job start Mon Mar 30 2020 07:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47064 * 2 1 4 4 C 1.50700 * 109.47170 * 239.99859 * 2 1 3 5 5 H 1.07994 * 120.00255 * 354.89148 * 4 2 1 6 6 C 1.37880 * 119.99982 * 174.88815 * 4 2 1 7 7 N 1.31515 * 120.00022 * 178.47835 * 6 4 2 8 8 Si 1.86800 * 120.00104 * 358.47959 * 6 4 2 9 9 H 1.48498 * 109.47301 * 85.18578 * 8 6 4 10 10 H 1.48495 * 109.47246 * 205.18760 * 8 6 4 11 11 H 1.48504 * 109.46930 * 325.18992 * 8 6 4 12 12 N 1.46907 * 109.47041 * 119.99991 * 2 1 3 13 13 C 1.46899 * 110.99757 * 58.95727 * 12 2 1 14 14 C 1.46892 * 110.99959 * 295.00051 * 12 2 1 15 15 C 1.50701 * 109.47006 * 190.00124 * 14 12 2 16 16 C 1.38545 * 126.21657 * 260.04009 * 15 14 12 17 17 N 1.31486 * 109.00847 * 179.97438 * 16 15 14 18 18 N 1.40039 * 108.91135 * 0.02562 * 17 16 15 19 19 C 1.36544 * 132.42370 * 180.02562 * 18 17 16 20 20 C 1.34932 * 120.65585 * 179.97438 * 19 18 17 21 21 C 1.40473 * 120.43055 * 359.97438 * 20 19 18 22 22 C 1.36061 * 119.59445 * 0.02562 * 21 20 19 23 23 C 1.37123 * 107.45062 * 359.97438 * 18 17 16 24 24 H 1.08996 * 109.47070 * 294.56285 * 1 2 3 25 25 H 1.08997 * 109.47603 * 54.56714 * 1 2 3 26 26 H 1.09002 * 109.47112 * 174.56954 * 1 2 3 27 27 H 0.96995 * 120.00040 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46835 * 296.04121 * 13 12 2 29 29 H 1.08998 * 109.47325 * 56.04901 * 13 12 2 30 30 H 1.09006 * 109.46897 * 176.04553 * 13 12 2 31 31 H 1.08997 * 109.47644 * 70.00260 * 14 12 2 32 32 H 1.09008 * 109.47356 * 309.99798 * 14 12 2 33 33 H 1.08003 * 125.49594 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.67244 * 359.96501 * 19 18 17 35 35 H 1.07995 * 119.78419 * 179.69474 * 20 19 18 36 36 H 1.08002 * 120.20651 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.39072 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.3341 -1.1924 -1.8986 6 6 3.3834 -0.7451 -1.5032 7 7 3.8244 -1.3905 -2.5608 8 14 4.5875 0.1247 -0.3705 9 1 4.9413 -0.7724 0.7588 10 1 5.8157 0.4744 -1.1283 11 1 3.9627 1.3637 0.1587 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5572 3.6005 16 6 1.8345 -1.4456 4.5202 17 7 2.7557 -1.7465 5.4089 18 7 3.9326 -1.0559 5.0943 19 6 5.1631 -1.0162 5.6848 20 6 6.1489 -0.2519 5.1701 21 6 5.9244 0.5162 4.0156 22 6 4.7035 0.4869 3.4159 23 6 3.6863 -0.3161 3.9664 24 1 -0.3633 0.4272 0.9346 25 1 -0.3634 0.5958 -0.8373 26 1 -0.3633 -1.0231 -0.0973 27 1 4.7749 -1.4145 -2.7529 28 1 0.4420 -2.0731 1.3347 29 1 1.8168 -2.5950 0.3318 30 1 1.9617 -2.5869 2.1059 31 1 0.5722 -0.0346 2.5726 32 1 1.9297 1.0870 2.3125 33 1 0.8249 -1.8291 4.5089 34 1 5.3492 -1.6021 6.5728 35 1 7.1153 -0.2272 5.6515 36 1 6.7159 1.1269 3.6070 37 1 4.5169 1.0721 2.5276 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179452893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:08 Heat of formation + Delta-G solvation = 117.527445 kcal Electronic energy + Delta-G solvation = -19711.576364 eV Core-core repulsion = 16877.340816 eV Total energy + Delta-G solvation = -2834.235548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80622 -37.60053 -36.77956 -33.20423 -32.10950 -30.53605 -30.19593 -28.40257 -26.08573 -25.45577 -23.67777 -23.34400 -22.11037 -20.28121 -18.97140 -17.02546 -16.70747 -16.52425 -15.76707 -15.55394 -14.84841 -14.58787 -14.26117 -13.74044 -13.53306 -13.17015 -12.69274 -12.57747 -12.06057 -12.01327 -11.71180 -11.55684 -11.31629 -10.97230 -10.94347 -10.58361 -10.50608 -10.24928 -10.10317 -9.87451 -9.59799 -9.16819 -9.03080 -8.50038 -7.34883 -7.08149 -5.98930 -4.04617 0.91109 1.24935 2.42973 2.89241 3.48416 3.51426 3.58498 3.65107 4.36155 4.63144 4.79742 4.80793 4.97118 5.04570 5.20683 5.46751 5.54515 5.64520 5.69170 5.80086 6.04321 6.11620 6.22713 6.24672 6.35848 6.37567 6.42168 6.48077 6.53746 6.60992 6.79049 6.89549 7.04798 7.07595 7.28354 7.70061 7.74801 8.11248 8.33784 8.63847 9.02262 9.66163 11.11017 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.008434 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.386170 B = 3318.902256 C = 4190.190566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.509 4.509 5 H 0.070 0.930 6 C 0.082 3.918 7 N -0.902 5.902 8 Si 0.911 3.089 9 H -0.266 1.266 10 H -0.313 1.313 11 H -0.273 1.273 12 N -0.532 5.532 13 C 0.043 3.957 14 C 0.126 3.874 15 C -0.221 4.221 16 C 0.079 3.921 17 N -0.328 5.328 18 N -0.278 5.278 19 C 0.101 3.899 20 C -0.162 4.162 21 C -0.103 4.103 22 C -0.089 4.089 23 C 0.114 3.886 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.011 0.989 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.186 0.814 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 3.585 15.703 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.060 0.940 4 C -0.547 4.547 5 H 0.089 0.911 6 C -0.122 4.122 7 N -0.539 5.539 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.242 1.242 11 H -0.199 1.199 12 N -0.257 5.257 13 C -0.105 4.105 14 C -0.003 4.003 15 C -0.232 4.232 16 C -0.097 4.097 17 N -0.152 5.152 18 N -0.046 5.046 19 C -0.024 4.024 20 C -0.184 4.184 21 C -0.126 4.126 22 C -0.109 4.109 23 C -0.005 4.005 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.180 0.820 35 H 0.168 0.832 36 H 0.155 0.845 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.680 2.755 16.668 17.106 hybrid contribution -0.277 0.705 -0.193 0.782 sum 2.403 3.461 16.475 17.005 Atomic orbital electron populations 1.22285 1.00035 1.00827 0.99138 1.19886 0.89821 0.95304 0.88647 0.93955 1.20877 0.93006 1.35698 1.05127 0.91146 1.25013 0.98641 0.94141 0.94362 1.69956 1.14637 1.42170 1.27162 0.86292 0.78498 0.80465 0.80571 1.19155 1.24228 1.19869 1.62674 1.59567 1.02444 1.01040 1.22062 0.95756 0.90823 1.01860 1.20311 0.95398 0.97002 0.87617 1.20038 0.92878 1.07940 1.02373 1.23625 0.98826 0.95341 0.91892 1.77772 0.90251 1.21392 1.25793 1.46126 1.09246 1.30132 1.19051 1.21343 0.81473 1.00532 0.99015 1.20754 0.99189 0.99825 0.98661 1.21097 0.97122 0.99091 0.95321 1.20768 0.91606 0.98447 1.00089 1.19287 0.95763 0.96157 0.89265 0.95120 0.93256 0.93261 0.92866 0.97026 0.90174 0.94136 0.94481 0.91456 0.79697 0.82021 0.83229 0.84491 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.39 37.16 0.31 -2.93 16 2 C 0.17 3.87 1.70 -68.86 -0.12 3.75 16 3 H 0.04 1.00 6.74 -51.93 -0.35 0.65 16 4 C -0.51 -14.01 7.75 -34.44 -0.27 -14.28 16 5 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 6 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 8 Si 0.91 22.83 25.15 -169.99 -4.28 18.56 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 11 H -0.27 -6.46 6.50 56.52 0.37 -6.09 16 12 N -0.53 -11.37 2.87 -237.73 -0.68 -12.06 16 13 C 0.04 0.89 8.61 60.06 0.52 1.41 16 14 C 0.13 2.27 4.90 -4.98 -0.02 2.24 16 15 C -0.22 -3.88 4.76 -104.25 -0.50 -4.38 16 16 C 0.08 1.27 11.23 -17.59 -0.20 1.07 16 17 N -0.33 -5.54 12.66 30.46 0.39 -5.15 16 18 N -0.28 -4.54 3.90 -10.71 -0.04 -4.59 16 19 C 0.10 1.27 11.19 -16.63 -0.19 1.08 16 20 C -0.16 -1.76 9.98 -39.91 -0.40 -2.16 16 21 C -0.10 -1.33 10.07 -39.52 -0.40 -1.73 16 22 C -0.09 -1.46 10.09 -39.40 -0.40 -1.86 16 23 C 0.11 2.01 6.76 -84.27 -0.57 1.44 16 24 H 0.03 0.53 6.50 -51.93 -0.34 0.19 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.98 6.79 -51.93 -0.35 0.63 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.01 0.21 6.63 -51.93 -0.34 -0.13 16 29 H 0.08 1.88 6.99 -51.93 -0.36 1.52 16 30 H 0.04 0.80 6.78 -51.93 -0.35 0.44 16 31 H 0.04 0.62 6.81 -51.93 -0.35 0.26 16 32 H 0.07 1.20 8.00 -51.92 -0.42 0.79 16 33 H 0.19 2.38 8.06 -52.48 -0.42 1.95 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.14 2.46 6.84 -52.49 -0.36 2.10 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -32.51 298.90 -6.59 -39.09 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.93 Total: 0.58 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.32 Total: -14.07 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.43 Total: -48.66 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.28 Total: 18.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.51 -6.59 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179452893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.621 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds