Wall clock time and date at job start Mon Mar 30 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47064 * 2 1 4 4 C 1.50700 * 109.47170 * 239.99859 * 2 1 3 5 5 H 1.07994 * 120.00255 * 354.89148 * 4 2 1 6 6 C 1.37880 * 119.99982 * 174.88815 * 4 2 1 7 7 N 1.31515 * 120.00022 * 178.47835 * 6 4 2 8 8 Si 1.86800 * 120.00104 * 358.47959 * 6 4 2 9 9 H 1.48498 * 109.47301 * 85.18578 * 8 6 4 10 10 H 1.48495 * 109.47246 * 205.18760 * 8 6 4 11 11 H 1.48504 * 109.46930 * 325.18992 * 8 6 4 12 12 N 1.46907 * 109.47041 * 119.99991 * 2 1 3 13 13 C 1.46899 * 110.99757 * 58.95727 * 12 2 1 14 14 C 1.46892 * 110.99959 * 295.00051 * 12 2 1 15 15 C 1.50701 * 109.47006 * 190.00124 * 14 12 2 16 16 C 1.38545 * 126.21657 * 260.04009 * 15 14 12 17 17 N 1.31486 * 109.00847 * 179.97438 * 16 15 14 18 18 N 1.40039 * 108.91135 * 0.02562 * 17 16 15 19 19 C 1.36544 * 132.42370 * 180.02562 * 18 17 16 20 20 C 1.34932 * 120.65585 * 179.97438 * 19 18 17 21 21 C 1.40473 * 120.43055 * 359.97438 * 20 19 18 22 22 C 1.36061 * 119.59445 * 0.02562 * 21 20 19 23 23 C 1.37123 * 107.45062 * 359.97438 * 18 17 16 24 24 H 1.08996 * 109.47070 * 294.56285 * 1 2 3 25 25 H 1.08997 * 109.47603 * 54.56714 * 1 2 3 26 26 H 1.09002 * 109.47112 * 174.56954 * 1 2 3 27 27 H 0.96995 * 120.00040 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46835 * 296.04121 * 13 12 2 29 29 H 1.08998 * 109.47325 * 56.04901 * 13 12 2 30 30 H 1.09006 * 109.46897 * 176.04553 * 13 12 2 31 31 H 1.08997 * 109.47644 * 70.00260 * 14 12 2 32 32 H 1.09008 * 109.47356 * 309.99798 * 14 12 2 33 33 H 1.08003 * 125.49594 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.67244 * 359.96501 * 19 18 17 35 35 H 1.07995 * 119.78419 * 179.69474 * 20 19 18 36 36 H 1.08002 * 120.20651 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.39072 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.3341 -1.1924 -1.8986 6 6 3.3834 -0.7451 -1.5032 7 7 3.8244 -1.3905 -2.5608 8 14 4.5875 0.1247 -0.3705 9 1 4.9413 -0.7724 0.7588 10 1 5.8157 0.4744 -1.1283 11 1 3.9627 1.3637 0.1587 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5572 3.6005 16 6 1.8345 -1.4456 4.5202 17 7 2.7557 -1.7465 5.4089 18 7 3.9326 -1.0559 5.0943 19 6 5.1631 -1.0162 5.6848 20 6 6.1489 -0.2519 5.1701 21 6 5.9244 0.5162 4.0156 22 6 4.7035 0.4869 3.4159 23 6 3.6863 -0.3161 3.9664 24 1 -0.3633 0.4272 0.9346 25 1 -0.3634 0.5958 -0.8373 26 1 -0.3633 -1.0231 -0.0973 27 1 4.7749 -1.4145 -2.7529 28 1 0.4420 -2.0731 1.3347 29 1 1.8168 -2.5950 0.3318 30 1 1.9617 -2.5869 2.1059 31 1 0.5722 -0.0346 2.5726 32 1 1.9297 1.0870 2.3125 33 1 0.8249 -1.8291 4.5089 34 1 5.3492 -1.6021 6.5728 35 1 7.1153 -0.2272 5.6515 36 1 6.7159 1.1269 3.6070 37 1 4.5169 1.0721 2.5276 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179452893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:07 Heat of formation + Delta-G solvation = 96.431871 kcal Electronic energy + Delta-G solvation = -19712.491137 eV Core-core repulsion = 16877.340816 eV Total energy + Delta-G solvation = -2835.150320 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.93393 -39.11755 -37.98847 -34.78001 -33.83424 -31.79905 -31.57510 -29.81882 -27.62306 -27.32246 -24.93545 -24.64530 -23.31113 -21.63580 -20.66325 -18.83344 -18.09395 -17.58914 -16.91200 -16.76150 -16.42166 -16.11119 -15.71085 -15.27734 -15.10831 -14.70949 -14.33038 -13.98323 -13.57946 -13.18668 -13.13021 -12.85053 -12.76730 -12.59522 -12.50122 -12.26742 -12.06631 -11.82456 -11.72343 -11.46693 -11.33175 -10.99716 -10.70263 -10.25632 -8.82175 -8.40879 -8.20311 -6.29547 -0.12983 0.17493 1.38290 1.42993 1.55233 1.63364 1.72696 2.47017 2.53103 3.09640 3.32440 3.69886 3.74016 3.91181 4.02835 4.16712 4.34609 4.42271 4.54123 4.59493 4.65414 4.69414 4.73486 4.79678 4.84850 4.93874 5.01893 5.15714 5.21940 5.36892 5.37964 5.49129 5.51179 5.62715 5.69873 5.97155 6.15426 6.55614 6.59656 6.69398 6.89059 7.44603 8.92118 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.008434 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.386170 B = 3318.902256 C = 4190.190566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.040 0.960 4 C -0.504 4.504 5 H 0.031 0.969 6 C 0.025 3.975 7 N -0.952 5.952 8 Si 0.976 3.024 9 H -0.269 1.269 10 H -0.319 1.319 11 H -0.253 1.253 12 N -0.547 5.547 13 C 0.056 3.944 14 C 0.135 3.865 15 C -0.255 4.255 16 C 0.082 3.918 17 N -0.351 5.351 18 N -0.286 5.286 19 C 0.087 3.913 20 C -0.149 4.149 21 C -0.083 4.083 22 C -0.137 4.137 23 C 0.101 3.899 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.261 0.739 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.210 0.790 34 H 0.194 0.806 35 H 0.199 0.801 36 H 0.168 0.832 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 4.596 18.776 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.066 3.934 3 H 0.058 0.942 4 C -0.543 4.543 5 H 0.049 0.951 6 C -0.173 4.173 7 N -0.592 5.592 8 Si 0.804 3.196 9 H -0.194 1.194 10 H -0.248 1.248 11 H -0.177 1.177 12 N -0.272 5.272 13 C -0.092 4.092 14 C 0.007 3.993 15 C -0.267 4.267 16 C -0.093 4.093 17 N -0.176 5.176 18 N -0.053 5.053 19 C -0.037 4.037 20 C -0.170 4.170 21 C -0.106 4.106 22 C -0.156 4.156 23 C -0.019 4.019 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.226 0.774 34 H 0.211 0.789 35 H 0.216 0.784 36 H 0.186 0.814 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.730 3.773 19.767 20.467 hybrid contribution -0.535 0.382 -1.075 1.260 sum 3.195 4.155 18.692 19.413 Atomic orbital electron populations 1.22163 0.97600 1.00824 1.00878 1.19700 0.91842 0.94300 0.87581 0.94225 1.21134 0.92263 1.34561 1.06308 0.95096 1.25834 1.00663 0.95107 0.95721 1.70097 1.14880 1.44721 1.29517 0.85277 0.76045 0.80073 0.78166 1.19400 1.24801 1.17694 1.62361 1.60280 1.02759 1.01848 1.21881 0.96968 0.90313 1.00087 1.20225 0.96549 0.96393 0.86150 1.20003 0.93560 1.09971 1.03121 1.23975 0.99699 0.94526 0.91105 1.77702 0.90841 1.22433 1.26585 1.46418 1.10136 1.29764 1.18947 1.22200 0.80456 1.01083 0.99987 1.21354 1.00602 0.97647 0.97428 1.21639 0.96331 0.97789 0.94823 1.20818 0.93194 1.00415 1.01218 1.19571 0.96188 0.96338 0.89761 0.91967 0.93213 0.93834 0.93026 0.95026 0.94062 0.93309 0.92650 0.91535 0.77360 0.78894 0.78413 0.81448 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 8.39 71.98 0.60 -5.35 16 2 C 0.17 7.82 1.70 44.17 0.08 7.89 16 3 H 0.04 1.84 6.74 -2.39 -0.02 1.82 16 4 C -0.50 -28.57 7.75 25.60 0.20 -28.37 16 5 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 6 C 0.02 1.47 5.47 84.66 0.46 1.93 16 7 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 8 Si 0.98 48.07 25.15 68.60 1.73 49.79 16 9 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.32 -15.79 7.11 99.48 0.71 -15.08 16 11 H -0.25 -11.41 6.50 99.48 0.65 -10.77 16 12 N -0.55 -22.93 2.87 -906.05 -2.60 -25.53 16 13 C 0.06 2.28 8.61 127.69 1.10 3.38 16 14 C 0.13 4.64 4.90 85.56 0.42 5.06 16 15 C -0.25 -8.60 4.76 -19.62 -0.09 -8.69 16 16 C 0.08 2.50 11.23 84.82 0.95 3.46 16 17 N -0.35 -11.26 12.66 -57.54 -0.73 -11.99 16 18 N -0.29 -8.71 3.90 -187.78 -0.73 -9.44 16 19 C 0.09 1.85 11.19 83.20 0.93 2.78 16 20 C -0.15 -2.52 9.98 22.05 0.22 -2.30 16 21 C -0.08 -1.81 10.07 22.31 0.22 -1.59 16 22 C -0.14 -4.20 10.09 22.39 0.23 -3.97 16 23 C 0.10 3.40 6.76 39.11 0.26 3.67 16 24 H 0.06 1.98 6.50 -2.39 -0.02 1.96 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.69 6.79 -2.39 -0.02 1.67 16 27 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.03 1.14 6.63 -2.39 -0.02 1.13 16 29 H 0.04 1.98 6.99 -2.39 -0.02 1.96 16 30 H 0.05 1.89 6.78 -2.38 -0.02 1.88 16 31 H 0.06 1.68 6.81 -2.39 -0.02 1.67 16 32 H 0.07 2.27 8.00 -2.38 -0.02 2.25 16 33 H 0.21 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.13 4.24 6.84 -2.91 -0.02 4.22 16 Total: -1.00 -73.64 298.90 4.55 -69.09 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.00 Total: 10.46 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.58 Total: -22.11 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.76 Total: -107.24 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.73 Total: 49.79 kcal Total: -73.64 4.55 -69.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179452893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.526 kcal (2) G-P(sol) polarization free energy of solvation -73.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds