Wall clock time and date at job start Mon Mar 30 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47076 * 2 1 4 4 C 1.38048 * 126.35003 * 90.02551 * 3 2 1 5 5 C 1.38833 * 134.13825 * 359.97438 * 4 3 2 6 6 C 1.37848 * 119.69197 * 180.02562 * 5 4 3 7 7 C 1.38783 * 120.45026 * 359.97438 * 6 5 4 8 8 C 1.36603 * 120.66827 * 0.02562 * 7 6 5 9 9 C 1.39735 * 119.88474 * 0.28758 * 8 7 6 10 10 N 1.35787 * 133.60090 * 179.72469 * 9 8 7 11 11 C 1.30110 * 109.64483 * 179.97438 * 10 9 8 12 12 C 1.50697 * 124.95422 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47358 * 194.97797 * 12 11 10 14 14 C 1.53006 * 109.47118 * 74.97623 * 12 11 10 15 15 N 1.46500 * 109.47291 * 314.97826 * 12 11 10 16 16 C 1.36936 * 120.00698 * 204.99730 * 15 12 11 17 17 H 1.08003 * 119.99282 * 0.02562 * 16 15 12 18 18 C 1.38805 * 120.00313 * 179.97438 * 16 15 12 19 19 N 1.31617 * 120.00312 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99939 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46941 * 60.00221 * 20 18 16 22 22 H 1.48504 * 109.47320 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47551 * 300.00430 * 20 18 16 24 24 H 1.09003 * 109.46663 * 59.99901 * 1 2 3 25 25 H 1.08994 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47050 * 300.00202 * 1 2 3 27 27 H 1.09003 * 109.46998 * 240.00424 * 2 1 3 28 28 H 1.08995 * 109.47438 * 120.00357 * 2 1 3 29 29 H 1.08002 * 120.15521 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.77959 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.66342 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.05352 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.47036 * 59.99966 * 14 12 11 34 34 H 1.08996 * 109.47234 * 180.02562 * 14 12 11 35 35 H 1.09003 * 109.46901 * 300.00752 * 14 12 11 36 36 H 0.97009 * 119.99859 * 24.99423 * 15 12 11 37 37 H 0.97001 * 120.00297 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2916 2.1525 1.1119 5 6 2.2152 1.9362 2.4811 6 6 2.5713 2.9433 3.3524 7 6 3.0054 4.1700 2.8699 8 6 3.0868 4.4008 1.5260 9 6 2.7249 3.3969 0.6239 10 7 2.6919 3.3233 -0.7316 11 6 2.2718 2.1469 -1.0957 12 6 2.1040 1.6937 -2.5231 13 1 1.4996 0.7870 -2.5478 14 6 3.4781 1.4074 -3.1321 15 7 1.4377 2.7460 -3.2944 16 6 0.7264 2.4242 -4.4195 17 1 0.6563 1.3946 -4.7379 18 6 0.0947 3.4212 -5.1500 19 7 0.1797 4.6759 -4.7617 20 14 -0.8750 2.9823 -6.6851 21 1 -1.9734 2.0493 -6.3268 22 1 -1.4476 4.2172 -7.2788 23 1 0.0255 2.3316 -7.6703 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8785 0.9832 2.8619 30 1 2.5121 2.7766 4.4179 31 1 3.2816 4.9499 3.5639 32 1 3.4264 5.3590 1.1613 33 1 3.9739 0.6245 -2.5582 34 1 3.3568 1.0800 -4.1646 35 1 4.0826 2.3141 -3.1073 36 1 1.5004 3.6707 -3.0082 37 1 -0.2614 5.3727 -5.2724 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184677235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:19 Heat of formation + Delta-G solvation = 81.071950 kcal Electronic energy + Delta-G solvation = -19202.404777 eV Core-core repulsion = 16366.588401 eV Total energy + Delta-G solvation = -2835.816376 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86459 -37.40587 -35.27620 -34.67255 -32.03678 -31.01972 -29.17890 -28.98904 -28.06224 -24.42306 -23.75504 -22.94142 -21.83865 -20.82432 -19.15989 -17.62561 -16.96826 -16.56852 -15.44932 -15.14048 -14.57420 -14.41026 -14.07135 -13.64398 -13.52684 -13.42721 -12.90680 -12.59572 -12.35098 -12.17087 -11.86629 -11.62004 -11.30393 -11.18483 -11.08143 -10.85490 -10.82996 -10.62795 -10.14473 -10.07799 -9.75673 -9.42199 -8.98509 -8.01398 -7.78253 -7.03162 -5.76957 -3.08578 1.22420 1.75667 2.84208 3.17309 3.42703 3.46863 3.48685 4.16429 4.53994 4.57043 4.67251 4.75238 5.02365 5.14583 5.16276 5.18705 5.48023 5.56429 5.58238 5.63068 5.69169 5.72129 5.82550 5.94469 5.99249 6.16571 6.17211 6.34845 6.43689 6.57238 6.68335 6.72516 6.82469 6.96706 7.17517 7.47880 7.64137 8.35902 8.42758 9.51675 10.05582 10.44025 11.44460 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.005592 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.141182 B = 5005.618383 C = 5435.902861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.491 5.491 4 C 0.040 3.960 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.136 4.136 8 C -0.065 4.065 9 C 0.052 3.948 10 N -0.484 5.484 11 C 0.306 3.694 12 C 0.249 3.751 13 H 0.062 0.938 14 C -0.159 4.159 15 N -0.710 5.710 16 C -0.250 4.250 17 H 0.072 0.928 18 C -0.006 4.006 19 N -0.923 5.923 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.284 1.284 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -8.936 14.499 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.181 5.181 4 C -0.069 4.069 5 C -0.131 4.131 6 C -0.135 4.135 7 C -0.157 4.157 8 C -0.085 4.085 9 C -0.068 4.068 10 N -0.202 5.202 11 C 0.039 3.961 12 C 0.136 3.864 13 H 0.080 0.920 14 C -0.221 4.221 15 N -0.353 5.353 16 C -0.381 4.381 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.232 0.768 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.328 -8.449 13.803 16.752 hybrid contribution -0.837 -0.560 -0.175 1.022 sum 3.491 -9.009 13.627 16.705 Atomic orbital electron populations 1.22199 0.94239 1.02843 1.03798 1.21728 0.95702 0.79937 1.04049 1.45497 1.54888 1.12724 1.04993 1.18896 1.05366 0.93307 0.89323 1.19846 1.04431 0.99907 0.88921 1.20742 1.00822 0.93215 0.98737 1.20534 1.02899 0.97511 0.94721 1.20020 0.99213 0.97680 0.91546 1.19221 1.03367 0.93427 0.90739 1.70490 1.21968 1.17932 1.09827 1.24630 0.93859 0.86185 0.91409 1.18752 0.94077 0.93072 0.80486 0.92045 1.22430 0.97717 1.00782 1.01130 1.42377 1.59898 1.05090 1.27894 1.19149 1.24663 0.93270 1.00974 0.91032 1.24777 1.00888 0.95285 0.99400 1.69695 1.47556 0.99053 1.40675 0.86260 0.79861 0.76954 0.82995 1.21241 1.21618 1.21104 0.90852 0.90780 0.92194 0.88740 0.89684 0.86689 0.85912 0.85887 0.85603 0.94569 0.91440 0.92144 0.76750 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.31 6.41 -4.04 -0.03 1.28 16 3 N -0.49 -8.15 2.81 -111.15 -0.31 -8.46 16 4 C 0.04 0.68 6.87 -83.99 -0.58 0.10 16 5 C -0.11 -1.48 10.05 -39.50 -0.40 -1.88 16 6 C -0.12 -1.39 10.03 -39.52 -0.40 -1.79 16 7 C -0.14 -1.75 9.96 -39.97 -0.40 -2.15 16 8 C -0.07 -1.04 10.05 -39.61 -0.40 -1.44 16 9 C 0.05 0.99 7.23 -84.70 -0.61 0.37 16 10 N -0.48 -10.57 10.90 -8.23 -0.09 -10.66 16 11 C 0.31 6.11 6.68 -154.81 -1.03 5.08 16 12 C 0.25 5.12 3.14 -69.08 -0.22 4.90 16 13 H 0.06 1.17 6.97 -51.93 -0.36 0.81 16 14 C -0.16 -2.96 9.47 37.16 0.35 -2.61 16 15 N -0.71 -18.36 5.11 -54.55 -0.28 -18.64 16 16 C -0.25 -6.85 9.93 -15.06 -0.15 -7.00 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -28.35 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.03 7.32 -51.93 -0.38 0.65 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 11.43 7.49 -40.82 -0.31 11.12 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -32.71 315.45 -9.04 -41.75 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.24 Total: 8.85 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.57 Total: -7.07 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.04 Total: -65.38 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.71 -9.04 -41.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184677235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.818 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds