Wall clock time and date at job start Mon Mar 30 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47076 * 2 1 4 4 C 1.38048 * 126.35003 * 90.02551 * 3 2 1 5 5 C 1.38833 * 134.13825 * 359.97438 * 4 3 2 6 6 C 1.37848 * 119.69197 * 180.02562 * 5 4 3 7 7 C 1.38783 * 120.45026 * 359.97438 * 6 5 4 8 8 C 1.36603 * 120.66827 * 0.02562 * 7 6 5 9 9 C 1.39735 * 119.88474 * 0.28758 * 8 7 6 10 10 N 1.35787 * 133.60090 * 179.72469 * 9 8 7 11 11 C 1.30110 * 109.64483 * 179.97438 * 10 9 8 12 12 C 1.50697 * 124.95422 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47358 * 194.97797 * 12 11 10 14 14 C 1.53006 * 109.47118 * 74.97623 * 12 11 10 15 15 N 1.46500 * 109.47291 * 314.97826 * 12 11 10 16 16 C 1.36936 * 120.00698 * 204.99730 * 15 12 11 17 17 H 1.08003 * 119.99282 * 0.02562 * 16 15 12 18 18 C 1.38805 * 120.00313 * 179.97438 * 16 15 12 19 19 N 1.31617 * 120.00312 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99939 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46941 * 60.00221 * 20 18 16 22 22 H 1.48504 * 109.47320 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47551 * 300.00430 * 20 18 16 24 24 H 1.09003 * 109.46663 * 59.99901 * 1 2 3 25 25 H 1.08994 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47050 * 300.00202 * 1 2 3 27 27 H 1.09003 * 109.46998 * 240.00424 * 2 1 3 28 28 H 1.08995 * 109.47438 * 120.00357 * 2 1 3 29 29 H 1.08002 * 120.15521 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.77959 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.66342 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.05352 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.47036 * 59.99966 * 14 12 11 34 34 H 1.08996 * 109.47234 * 180.02562 * 14 12 11 35 35 H 1.09003 * 109.46901 * 300.00752 * 14 12 11 36 36 H 0.97009 * 119.99859 * 24.99423 * 15 12 11 37 37 H 0.97001 * 120.00297 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2916 2.1525 1.1119 5 6 2.2152 1.9362 2.4811 6 6 2.5713 2.9433 3.3524 7 6 3.0054 4.1700 2.8699 8 6 3.0868 4.4008 1.5260 9 6 2.7249 3.3969 0.6239 10 7 2.6919 3.3233 -0.7316 11 6 2.2718 2.1469 -1.0957 12 6 2.1040 1.6937 -2.5231 13 1 1.4996 0.7870 -2.5478 14 6 3.4781 1.4074 -3.1321 15 7 1.4377 2.7460 -3.2944 16 6 0.7264 2.4242 -4.4195 17 1 0.6563 1.3946 -4.7379 18 6 0.0947 3.4212 -5.1500 19 7 0.1797 4.6759 -4.7617 20 14 -0.8750 2.9823 -6.6851 21 1 -1.9734 2.0493 -6.3268 22 1 -1.4476 4.2172 -7.2788 23 1 0.0255 2.3316 -7.6703 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8785 0.9832 2.8619 30 1 2.5121 2.7766 4.4179 31 1 3.2816 4.9499 3.5639 32 1 3.4264 5.3590 1.1613 33 1 3.9739 0.6245 -2.5582 34 1 3.3568 1.0800 -4.1646 35 1 4.0826 2.3141 -3.1073 36 1 1.5004 3.6707 -3.0082 37 1 -0.2614 5.3727 -5.2724 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184677235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:18 Heat of formation + Delta-G solvation = 60.654374 kcal Electronic energy + Delta-G solvation = -19203.290150 eV Core-core repulsion = 16366.588401 eV Total energy + Delta-G solvation = -2836.701749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.12910 -38.60018 -36.96341 -35.87350 -33.97981 -32.10737 -30.74113 -30.27379 -29.49081 -26.23398 -24.79063 -24.57174 -23.02922 -22.09576 -20.57110 -19.44081 -18.16363 -17.89473 -16.97331 -16.43444 -16.26183 -15.51463 -15.28957 -15.24056 -15.05553 -14.60774 -14.24658 -14.04857 -13.86803 -13.29474 -13.13611 -12.88120 -12.76477 -12.69029 -12.38445 -12.36014 -12.25975 -12.17321 -12.00532 -11.76318 -11.30223 -11.02707 -10.76801 -9.20753 -9.09970 -9.00553 -7.92904 -5.25795 0.04634 0.63235 1.47599 1.52172 1.58109 1.66658 1.87014 2.56935 2.97901 3.22677 3.43196 3.51081 3.73038 3.96234 4.08359 4.12492 4.17507 4.24552 4.33999 4.48184 4.52487 4.55119 4.58232 4.74745 4.82329 4.90179 4.94947 5.02731 5.19128 5.27681 5.36323 5.48127 5.57610 5.62219 5.69031 6.06012 6.22280 6.26527 7.04921 7.31676 8.01928 8.29079 9.30572 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.005592 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.141182 B = 5005.618383 C = 5435.902861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.484 5.484 4 C 0.031 3.969 5 C -0.111 4.111 6 C -0.101 4.101 7 C -0.124 4.124 8 C -0.093 4.093 9 C 0.002 3.998 10 N -0.532 5.532 11 C 0.282 3.718 12 C 0.247 3.753 13 H 0.079 0.921 14 C -0.147 4.147 15 N -0.728 5.728 16 C -0.244 4.244 17 H 0.089 0.911 18 C -0.076 4.076 19 N -0.972 5.972 20 Si 0.980 3.020 21 H -0.274 1.274 22 H -0.300 1.300 23 H -0.273 1.273 24 H 0.035 0.965 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.376 0.624 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 -11.721 16.971 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.174 5.174 4 C -0.079 4.079 5 C -0.132 4.132 6 C -0.120 4.120 7 C -0.144 4.144 8 C -0.113 4.113 9 C -0.116 4.116 10 N -0.252 5.252 11 C 0.015 3.985 12 C 0.137 3.863 13 H 0.097 0.903 14 C -0.208 4.208 15 N -0.369 5.369 16 C -0.375 4.375 17 H 0.107 0.893 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.808 3.192 21 H -0.200 1.200 22 H -0.227 1.227 23 H -0.199 1.199 24 H 0.054 0.946 25 H 0.126 0.874 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.138 0.862 29 H 0.167 0.833 30 H 0.186 0.814 31 H 0.176 0.824 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.209 0.791 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.253 -11.322 16.301 20.298 hybrid contribution -0.732 0.279 -0.704 1.053 sum 3.521 -11.043 15.597 19.433 Atomic orbital electron populations 1.22150 0.94140 1.04375 1.01680 1.22151 0.95738 0.77945 1.06378 1.45616 1.54013 1.13835 1.03910 1.19292 1.05442 0.92474 0.90657 1.20332 1.03719 1.01863 0.87267 1.21332 0.97948 0.91943 1.00808 1.20989 1.00794 0.98955 0.93621 1.20273 1.00769 0.97326 0.92926 1.19709 1.05916 0.95831 0.90168 1.70330 1.23264 1.19500 1.12145 1.24184 0.95744 0.86773 0.91786 1.18902 0.94592 0.92053 0.80791 0.90337 1.22247 0.96416 1.00724 1.01369 1.42562 1.60494 1.05372 1.28445 1.19659 1.23082 0.93863 1.00943 0.89330 1.25688 1.02913 0.95173 1.03030 1.69900 1.49634 1.00256 1.42402 0.85125 0.78587 0.76329 0.79153 1.19957 1.22651 1.19862 0.94560 0.87352 0.92636 0.87626 0.86152 0.83264 0.81400 0.82446 0.86222 0.91086 0.91650 0.94525 0.79139 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 10.24 71.98 0.74 -2.85 16 2 C 0.10 2.12 6.41 86.38 0.55 2.67 16 3 N -0.48 -15.69 2.81 -505.58 -1.42 -17.11 16 4 C 0.03 1.00 6.87 38.86 0.27 1.27 16 5 C -0.11 -2.59 10.05 22.32 0.22 -2.37 16 6 C -0.10 -1.99 10.03 22.31 0.22 -1.76 16 7 C -0.12 -2.84 9.96 22.02 0.22 -2.62 16 8 C -0.09 -3.02 10.05 22.25 0.22 -2.80 16 9 C 0.00 0.08 7.23 39.45 0.29 0.36 16 10 N -0.53 -24.58 10.90 -179.96 -1.96 -26.54 16 11 C 0.28 11.60 6.68 137.92 0.92 12.52 16 12 C 0.25 10.37 3.14 44.25 0.14 10.51 16 13 H 0.08 2.97 6.97 -2.39 -0.02 2.95 16 14 C -0.15 -5.49 9.47 71.98 0.68 -4.81 16 15 N -0.73 -39.18 5.11 -326.50 -1.67 -40.85 16 16 C -0.24 -13.65 9.93 84.03 0.83 -12.81 16 17 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 18 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 20 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.11 2.03 7.32 -2.39 -0.02 2.01 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.38 23.07 7.49 -92.70 -0.69 22.38 16 37 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -76.58 315.45 3.41 -73.18 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.37 Total: 31.76 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.78 Total: -6.67 kcal Atomic # 7 Polarization: -141.88 SS G_CDS: -4.77 Total: -146.65 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.58 3.41 -73.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184677235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.832 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds