Wall clock time and date at job start Mon Mar 30 2020 07:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38263 * 120.08628 * 2 1 4 4 C 1.38017 * 119.86993 * 180.35476 * 3 2 1 5 5 C 1.50701 * 119.81181 * 179.67792 * 4 3 2 6 6 C 1.38732 * 120.37617 * 359.39524 * 4 3 2 7 7 C 1.37838 * 119.72495 * 0.20606 * 6 4 3 8 8 C 1.38035 * 120.08764 * 179.71848 * 2 1 3 9 9 C 1.50718 * 121.65823 * 180.28003 * 7 6 4 10 10 C 1.52900 * 109.95936 * 343.10362 * 9 7 6 11 11 N 1.47163 * 108.50150 * 50.38983 * 10 9 7 12 12 C 1.46902 * 111.00095 * 52.15671 * 11 10 9 13 13 H 1.08992 * 109.46828 * 292.00684 * 12 11 10 14 14 C 1.52997 * 109.47187 * 172.00487 * 12 11 10 15 15 C 1.50706 * 109.47155 * 52.00452 * 12 11 10 16 16 H 1.07998 * 119.99554 * 31.87766 * 15 12 11 17 17 C 1.37874 * 120.00192 * 211.87594 * 15 12 11 18 18 N 1.31509 * 119.99992 * 181.64361 * 17 15 12 19 19 Si 1.86799 * 119.99648 * 1.64395 * 17 15 12 20 20 H 1.48501 * 109.47391 * 84.61990 * 19 17 15 21 21 H 1.48506 * 109.46947 * 204.61452 * 19 17 15 22 22 H 1.48497 * 109.47291 * 324.61615 * 19 17 15 23 23 C 1.46626 * 110.25181 * 288.73109 * 11 10 9 24 24 H 1.09005 * 109.46599 * 270.27849 * 1 2 3 25 25 H 1.08994 * 109.47425 * 30.28005 * 1 2 3 26 26 H 1.09005 * 109.47352 * 150.28619 * 1 2 3 27 27 H 1.08000 * 120.06814 * 0.07178 * 3 2 1 28 28 H 1.09000 * 109.46622 * 269.72089 * 5 4 3 29 29 H 1.08999 * 109.47036 * 29.72241 * 5 4 3 30 30 H 1.08998 * 109.47093 * 149.72099 * 5 4 3 31 31 H 1.08001 * 119.82545 * 0.02972 * 8 2 1 32 32 H 1.08999 * 109.39135 * 222.95723 * 9 7 6 33 33 H 1.09001 * 109.30580 * 103.20366 * 9 7 6 34 34 H 1.08994 * 109.63474 * 290.68683 * 10 9 7 35 35 H 1.08995 * 109.79168 * 170.18977 * 10 9 7 36 36 H 1.08996 * 109.47460 * 186.62611 * 14 12 11 37 37 H 1.09003 * 109.46975 * 306.62400 * 14 12 11 38 38 H 1.09004 * 109.47010 * 66.62577 * 14 12 11 39 39 H 0.97002 * 119.99626 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.30391 * 292.21237 * 23 11 10 41 41 H 1.09007 * 109.13103 * 172.73132 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1963 0.0000 4 6 3.5802 1.1911 -0.0074 5 6 4.3343 2.4959 -0.0148 6 6 4.2773 -0.0083 -0.0022 7 6 3.5857 -1.2006 0.0061 8 6 2.1990 -1.1944 0.0059 9 6 4.2986 -2.5285 0.0182 10 6 5.7579 -2.3413 -0.3982 11 7 6.3375 -1.2544 0.4071 12 6 6.1152 -1.4852 1.8407 13 1 5.0522 -1.3933 2.0629 14 6 6.8971 -0.4495 2.6512 15 6 6.5869 -2.8692 2.2058 16 1 7.4209 -3.3113 1.6811 17 6 5.9539 -3.5708 3.2097 18 7 6.3858 -4.7654 3.5503 19 14 4.4826 -2.8246 4.0861 20 1 3.2502 -3.0958 3.3032 21 1 4.3533 -3.4273 5.4372 22 1 4.6747 -1.3577 4.2147 23 6 5.7827 0.0373 -0.0095 24 1 -0.3633 0.0050 1.0277 25 1 -0.3634 0.8874 -0.5181 26 1 -0.3634 -0.8926 -0.5094 27 1 1.6626 2.1331 0.0012 28 1 4.5149 2.8053 -1.0442 29 1 3.7462 3.2583 0.4960 30 1 5.2872 2.3677 0.4986 31 1 1.6575 -2.1288 0.0100 32 1 3.8082 -3.2089 -0.6779 33 1 4.2601 -2.9490 1.0231 34 1 5.8065 -2.0799 -1.4552 35 1 6.3128 -3.2629 -0.2230 36 1 6.8281 -0.6907 3.7119 37 1 7.9426 -0.4611 2.3433 38 1 6.4776 0.5411 2.4759 39 1 5.9401 -5.2591 4.2564 40 1 6.1312 0.2716 -1.0154 41 1 6.1230 0.8110 0.6789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186461183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:02 Heat of formation + Delta-G solvation = 16.815850 kcal Electronic energy + Delta-G solvation = -20421.771001 eV Core-core repulsion = 17686.708615 eV Total energy + Delta-G solvation = -2735.062387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21327 -37.32759 -33.82415 -33.22757 -31.96040 -30.01222 -29.39671 -27.45123 -26.19639 -25.18816 -23.22167 -22.80279 -20.48299 -20.20482 -18.01384 -16.90250 -15.90358 -15.47417 -15.07380 -14.53770 -14.12313 -13.84305 -13.64980 -13.32433 -13.00696 -12.92111 -12.77190 -12.50898 -12.36182 -12.08373 -12.02728 -11.54002 -11.50400 -11.22097 -11.01197 -10.77517 -10.70468 -10.58980 -10.30208 -10.26781 -9.83798 -9.73087 -9.00454 -8.59881 -8.20712 -8.00827 -7.31904 -6.09878 -4.07639 1.63385 1.69261 3.24254 3.33763 3.39051 3.97175 4.38357 4.83976 4.95829 5.04781 5.11923 5.27471 5.29841 5.43094 5.45236 5.62218 5.65901 5.68213 5.80531 5.85273 5.88955 5.92344 5.98874 6.06388 6.14034 6.25855 6.40388 6.44614 6.49242 6.62546 6.66196 6.76506 6.81377 6.84543 6.93129 7.05287 7.09594 7.32774 7.38682 7.62463 8.01417 8.10695 8.65985 9.00287 9.54278 11.03047 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.008596 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.374275 B = 3256.436808 C = 3746.096848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.083 4.083 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.130 4.130 9 C -0.121 4.121 10 C 0.074 3.926 11 N -0.518 5.518 12 C 0.173 3.827 13 H 0.010 0.990 14 C -0.134 4.134 15 C -0.499 4.499 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.897 5.897 19 Si 0.861 3.139 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.083 3.917 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 10.968 -7.829 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.084 4.084 5 C -0.171 4.171 6 C -0.113 4.113 7 C -0.055 4.055 8 C -0.148 4.148 9 C -0.160 4.160 10 C -0.055 4.055 11 N -0.240 5.240 12 C 0.067 3.933 13 H 0.028 0.972 14 C -0.192 4.192 15 C -0.538 4.538 16 H 0.099 0.901 17 C -0.127 4.127 18 N -0.535 5.535 19 Si 0.688 3.312 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.045 4.045 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.770 10.808 -7.767 15.411 hybrid contribution -1.958 0.261 0.841 2.147 sum -9.728 11.069 -6.926 16.282 Atomic orbital electron populations 1.20725 0.91680 1.02210 1.01939 1.19736 0.95577 0.93247 1.00738 1.20699 0.93465 0.97048 1.03863 1.19801 0.93554 0.94815 1.00201 1.20827 1.00328 0.93969 1.02000 1.20404 0.98122 0.91995 1.00749 1.19764 0.93273 0.95280 0.97192 1.20958 0.93735 0.97320 1.02815 1.21201 0.97658 0.93018 1.04078 1.21916 0.91632 0.96794 0.95125 1.62767 1.54949 0.99972 1.06299 1.19769 0.94076 0.96085 0.83404 0.97205 1.21984 1.00831 0.96370 0.99985 1.20897 1.16995 0.97500 1.18380 0.90066 1.24912 0.96725 0.94554 0.96482 1.69876 1.41064 1.11971 1.30618 0.87136 0.84127 0.80374 0.79527 1.20111 1.21488 1.18931 1.21280 0.87270 0.95082 1.00883 0.91592 0.91945 0.91848 0.86770 0.91373 0.92054 0.91050 0.86652 0.91475 0.88533 0.92927 0.88905 0.93351 0.92786 0.96200 0.92653 0.90703 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.00 0.36 -0.90 16 2 C -0.09 -1.41 5.88 -104.69 -0.62 -2.03 16 3 C -0.13 -1.96 9.35 -39.65 -0.37 -2.33 16 4 C -0.08 -1.30 5.89 -104.52 -0.62 -1.92 16 5 C -0.11 -1.41 9.55 36.01 0.34 -1.07 16 6 C -0.11 -1.99 5.22 -104.63 -0.55 -2.53 16 7 C -0.05 -1.03 5.05 -104.60 -0.53 -1.56 16 8 C -0.13 -2.23 9.31 -39.49 -0.37 -2.60 16 9 C -0.12 -2.38 5.14 -27.93 -0.14 -2.53 16 10 C 0.07 1.45 5.51 -3.73 -0.02 1.43 16 11 N -0.52 -10.75 4.88 -229.60 -1.12 -11.87 16 12 C 0.17 4.06 0.93 -68.86 -0.06 4.00 16 13 H 0.01 0.25 3.35 -51.93 -0.17 0.08 16 14 C -0.13 -2.92 8.70 37.16 0.32 -2.60 16 15 C -0.50 -13.50 6.85 -34.44 -0.24 -13.74 16 16 H 0.08 2.42 7.79 -52.49 -0.41 2.01 16 17 C 0.08 2.11 5.35 -17.82 -0.10 2.02 16 18 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 19 Si 0.86 21.64 25.43 -169.99 -4.32 17.32 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.55 6.58 56.52 0.37 -6.17 16 23 C 0.08 1.48 4.72 -5.16 -0.02 1.45 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.07 0.89 6.02 -51.93 -0.31 0.58 16 31 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 2.22 5.26 -51.93 -0.27 1.95 16 34 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.09 1.99 7.06 -51.93 -0.37 1.62 16 36 H 0.05 1.09 7.43 -51.93 -0.39 0.71 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.02 0.38 6.63 -51.93 -0.34 0.03 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.44 4.34 -51.93 -0.23 1.21 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -29.61 307.81 -8.92 -38.53 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.29 Total: 2.26 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -2.60 Total: -24.90 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.35 Total: -37.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.32 Total: 17.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.61 -8.92 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186461183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.349 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds