Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38263 * 120.08628 * 2 1 4 4 C 1.38017 * 119.86993 * 180.35476 * 3 2 1 5 5 C 1.50701 * 119.81181 * 179.67792 * 4 3 2 6 6 C 1.38732 * 120.37617 * 359.39524 * 4 3 2 7 7 C 1.37838 * 119.72495 * 0.20606 * 6 4 3 8 8 C 1.38035 * 120.08764 * 179.71848 * 2 1 3 9 9 C 1.50718 * 121.65823 * 180.28003 * 7 6 4 10 10 C 1.52900 * 109.95936 * 343.10362 * 9 7 6 11 11 N 1.47163 * 108.50150 * 50.38983 * 10 9 7 12 12 C 1.46902 * 111.00095 * 52.15671 * 11 10 9 13 13 H 1.08992 * 109.46828 * 292.00684 * 12 11 10 14 14 C 1.52997 * 109.47187 * 172.00487 * 12 11 10 15 15 C 1.50706 * 109.47155 * 52.00452 * 12 11 10 16 16 H 1.07998 * 119.99554 * 31.87766 * 15 12 11 17 17 C 1.37874 * 120.00192 * 211.87594 * 15 12 11 18 18 N 1.31509 * 119.99992 * 181.64361 * 17 15 12 19 19 Si 1.86799 * 119.99648 * 1.64395 * 17 15 12 20 20 H 1.48501 * 109.47391 * 84.61990 * 19 17 15 21 21 H 1.48506 * 109.46947 * 204.61452 * 19 17 15 22 22 H 1.48497 * 109.47291 * 324.61615 * 19 17 15 23 23 C 1.46626 * 110.25181 * 288.73109 * 11 10 9 24 24 H 1.09005 * 109.46599 * 270.27849 * 1 2 3 25 25 H 1.08994 * 109.47425 * 30.28005 * 1 2 3 26 26 H 1.09005 * 109.47352 * 150.28619 * 1 2 3 27 27 H 1.08000 * 120.06814 * 0.07178 * 3 2 1 28 28 H 1.09000 * 109.46622 * 269.72089 * 5 4 3 29 29 H 1.08999 * 109.47036 * 29.72241 * 5 4 3 30 30 H 1.08998 * 109.47093 * 149.72099 * 5 4 3 31 31 H 1.08001 * 119.82545 * 0.02972 * 8 2 1 32 32 H 1.08999 * 109.39135 * 222.95723 * 9 7 6 33 33 H 1.09001 * 109.30580 * 103.20366 * 9 7 6 34 34 H 1.08994 * 109.63474 * 290.68683 * 10 9 7 35 35 H 1.08995 * 109.79168 * 170.18977 * 10 9 7 36 36 H 1.08996 * 109.47460 * 186.62611 * 14 12 11 37 37 H 1.09003 * 109.46975 * 306.62400 * 14 12 11 38 38 H 1.09004 * 109.47010 * 66.62577 * 14 12 11 39 39 H 0.97002 * 119.99626 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.30391 * 292.21237 * 23 11 10 41 41 H 1.09007 * 109.13103 * 172.73132 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1963 0.0000 4 6 3.5802 1.1911 -0.0074 5 6 4.3343 2.4959 -0.0148 6 6 4.2773 -0.0083 -0.0022 7 6 3.5857 -1.2006 0.0061 8 6 2.1990 -1.1944 0.0059 9 6 4.2986 -2.5285 0.0182 10 6 5.7579 -2.3413 -0.3982 11 7 6.3375 -1.2544 0.4071 12 6 6.1152 -1.4852 1.8407 13 1 5.0522 -1.3933 2.0629 14 6 6.8971 -0.4495 2.6512 15 6 6.5869 -2.8692 2.2058 16 1 7.4209 -3.3113 1.6811 17 6 5.9539 -3.5708 3.2097 18 7 6.3858 -4.7654 3.5503 19 14 4.4826 -2.8246 4.0861 20 1 3.2502 -3.0958 3.3032 21 1 4.3533 -3.4273 5.4372 22 1 4.6747 -1.3577 4.2147 23 6 5.7827 0.0373 -0.0095 24 1 -0.3633 0.0050 1.0277 25 1 -0.3634 0.8874 -0.5181 26 1 -0.3634 -0.8926 -0.5094 27 1 1.6626 2.1331 0.0012 28 1 4.5149 2.8053 -1.0442 29 1 3.7462 3.2583 0.4960 30 1 5.2872 2.3677 0.4986 31 1 1.6575 -2.1288 0.0100 32 1 3.8082 -3.2089 -0.6779 33 1 4.2601 -2.9490 1.0231 34 1 5.8065 -2.0799 -1.4552 35 1 6.3128 -3.2629 -0.2230 36 1 6.8281 -0.6907 3.7119 37 1 7.9426 -0.4611 2.3433 38 1 6.4776 0.5411 2.4759 39 1 5.9401 -5.2591 4.2564 40 1 6.1312 0.2716 -1.0154 41 1 6.1230 0.8110 0.6789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186461183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = -0.922124 kcal Electronic energy + Delta-G solvation = -20422.540178 eV Core-core repulsion = 17686.708615 eV Total energy + Delta-G solvation = -2735.831563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56393 -38.77524 -35.14420 -34.91507 -33.66772 -31.62818 -30.81572 -28.51227 -27.41735 -27.14227 -24.67209 -24.32190 -22.01493 -21.44004 -19.65260 -18.89162 -17.28808 -16.80359 -16.75946 -16.03717 -15.77095 -15.23898 -15.05048 -14.63378 -14.52691 -14.33232 -14.02512 -13.89384 -13.56991 -13.42142 -13.28973 -13.25602 -12.82127 -12.68801 -12.58547 -12.45561 -12.23186 -12.05552 -11.85880 -11.78977 -11.75329 -11.39883 -10.95780 -10.76569 -9.43614 -9.23990 -8.96767 -8.30082 -6.29724 0.42707 0.45497 1.22870 1.27115 1.35595 2.27604 2.75559 3.02994 3.35563 3.79284 3.88878 3.96831 4.07142 4.25264 4.31176 4.33993 4.51097 4.54154 4.63555 4.65440 4.70565 4.72413 4.78801 4.83114 4.84430 4.89535 4.92439 5.00003 5.07716 5.12425 5.16661 5.29718 5.36640 5.38171 5.49558 5.62246 5.64838 5.69751 5.80569 6.11660 6.17620 6.36157 6.72430 6.79061 7.35494 8.86830 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.008596 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.374275 B = 3256.436808 C = 3746.096848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.085 4.085 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.080 4.080 8 C -0.151 4.151 9 C -0.115 4.115 10 C 0.076 3.924 11 N -0.529 5.529 12 C 0.180 3.820 13 H 0.002 0.998 14 C -0.131 4.131 15 C -0.488 4.488 16 H 0.041 0.959 17 C 0.028 3.972 18 N -0.943 5.943 19 Si 0.916 3.084 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.253 1.253 23 C 0.087 3.913 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 14.357 -8.571 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.086 4.086 5 C -0.170 4.170 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.169 4.169 9 C -0.154 4.154 10 C -0.052 4.052 11 N -0.250 5.250 12 C 0.073 3.927 13 H 0.020 0.980 14 C -0.189 4.189 15 C -0.527 4.527 16 H 0.059 0.941 17 C -0.170 4.170 18 N -0.584 5.584 19 Si 0.741 3.259 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.177 1.177 23 C -0.041 4.041 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.164 0.836 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.697 14.219 -8.523 19.206 hybrid contribution -1.348 -0.769 0.956 1.822 sum -11.045 13.450 -7.568 18.978 Atomic orbital electron populations 1.20789 0.89126 1.03707 1.02773 1.20168 0.97528 0.92650 0.98991 1.21125 0.93387 0.98170 1.02454 1.20186 0.94308 0.95284 0.98774 1.20894 1.00033 0.92614 1.03422 1.20466 0.98011 0.92661 1.02284 1.19759 0.94140 0.94795 0.99379 1.21126 0.93343 0.98571 1.03839 1.21035 0.97873 0.94477 1.01979 1.21838 0.91441 0.95505 0.96397 1.62658 1.55864 1.01743 1.04747 1.19573 0.93499 0.94173 0.85485 0.98045 1.21899 1.00853 0.97336 0.98804 1.21024 1.15199 0.99278 1.17162 0.94103 1.25529 0.99188 0.94831 0.97468 1.70004 1.42896 1.13620 1.31880 0.86241 0.81167 0.80137 0.78309 1.19938 1.21296 1.17744 1.21339 0.87623 0.93083 1.02059 0.90936 0.89677 0.91234 0.83616 0.89542 0.90155 0.91291 0.86495 0.90230 0.92545 0.90383 0.92004 0.94543 0.92662 0.93215 0.92671 0.88765 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 10.01 71.23 0.71 -1.38 16 2 C -0.09 -2.55 5.88 -19.91 -0.12 -2.66 16 3 C -0.13 -3.40 9.35 22.22 0.21 -3.19 16 4 C -0.08 -2.35 5.89 -19.80 -0.12 -2.47 16 5 C -0.11 -2.28 9.55 71.24 0.68 -1.60 16 6 C -0.13 -4.45 5.22 -19.87 -0.10 -4.56 16 7 C -0.08 -2.95 5.05 -19.85 -0.10 -3.05 16 8 C -0.15 -4.96 9.31 22.33 0.21 -4.75 16 9 C -0.12 -4.62 5.14 29.82 0.15 -4.46 16 10 C 0.08 3.07 5.51 86.22 0.48 3.54 16 11 N -0.53 -21.75 4.88 -880.32 -4.29 -26.04 16 12 C 0.18 8.45 0.93 44.17 0.04 8.49 16 13 H 0.00 0.10 3.35 -2.39 -0.01 0.09 16 14 C -0.13 -5.56 8.70 71.98 0.63 -4.93 16 15 C -0.49 -27.40 6.85 25.60 0.18 -27.22 16 16 H 0.04 2.58 7.79 -2.91 -0.02 2.55 16 17 C 0.03 1.59 5.35 84.65 0.45 2.05 16 18 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 19 Si 0.92 45.50 25.43 68.60 1.74 47.24 16 20 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.25 -12.02 6.58 99.48 0.65 -11.37 16 23 C 0.09 2.88 4.72 85.58 0.40 3.28 16 24 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.07 1.27 8.09 -2.38 -0.02 1.25 16 27 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 30 H 0.07 1.43 6.02 -2.39 -0.01 1.42 16 31 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.06 2.70 5.26 -2.39 -0.01 2.68 16 34 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 35 H 0.06 2.81 7.06 -2.39 -0.02 2.80 16 36 H 0.04 1.60 7.43 -2.39 -0.02 1.58 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.80 6.63 -2.39 -0.02 1.78 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.09 2.88 4.34 -2.38 -0.01 2.87 16 Total: -1.00 -65.88 307.81 2.41 -63.47 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.96 Total: 16.51 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.70 Total: -42.92 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.99 Total: -84.31 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.74 Total: 47.24 kcal Total: -65.88 2.41 -63.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186461183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.552 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds