Wall clock time and date at job start Mon Mar 30 2020 07:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 120.06234 * 2 1 4 4 C 1.38029 * 119.82982 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.83032 * 179.97438 * 4 3 2 6 6 C 1.38680 * 120.34666 * 359.97291 * 4 3 2 7 7 C 1.37832 * 119.84732 * 359.86321 * 6 4 3 8 8 C 1.38009 * 120.07110 * 179.97438 * 2 1 3 9 9 C 1.50628 * 121.84751 * 180.42855 * 7 6 4 10 10 N 1.46638 * 110.49159 * 342.44870 * 9 7 6 11 11 C 1.46906 * 111.00193 * 289.11804 * 10 9 7 12 12 H 1.09001 * 109.46873 * 62.98778 * 11 10 9 13 13 C 1.52995 * 109.46982 * 182.98596 * 11 10 9 14 14 C 1.50702 * 109.46889 * 302.98690 * 11 10 9 15 15 H 1.08000 * 120.00316 * 335.25334 * 14 11 10 16 16 C 1.37878 * 119.99452 * 155.25712 * 14 11 10 17 17 N 1.31515 * 120.00223 * 355.29754 * 16 14 11 18 18 Si 1.86801 * 119.99586 * 175.30234 * 16 14 11 19 19 H 1.48487 * 109.47388 * 59.99914 * 18 16 14 20 20 H 1.48503 * 109.46974 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47113 * 299.99408 * 18 16 14 22 22 C 1.47163 * 110.24728 * 52.53898 * 10 9 7 23 23 C 1.50723 * 118.49045 * 179.83741 * 6 4 3 24 24 H 1.09008 * 109.46824 * 90.00029 * 1 2 3 25 25 H 1.08997 * 109.46794 * 209.99735 * 1 2 3 26 26 H 1.09002 * 109.47385 * 330.00003 * 1 2 3 27 27 H 1.08000 * 120.08847 * 0.07549 * 3 2 1 28 28 H 1.09006 * 109.46632 * 270.02596 * 5 4 3 29 29 H 1.09009 * 109.47046 * 30.01787 * 5 4 3 30 30 H 1.09000 * 109.47778 * 150.02079 * 5 4 3 31 31 H 1.08001 * 119.80764 * 0.02562 * 8 2 1 32 32 H 1.08997 * 109.31134 * 222.12709 * 9 7 6 33 33 H 1.08990 * 109.28203 * 102.75188 * 9 7 6 34 34 H 1.08995 * 109.46927 * 174.55154 * 13 11 10 35 35 H 1.09000 * 109.47437 * 294.54870 * 13 11 10 36 36 H 1.09002 * 109.47376 * 54.54998 * 13 11 10 37 37 H 0.97003 * 119.99664 * 5.34334 * 17 16 14 38 38 H 1.08996 * 109.62792 * 48.43713 * 22 10 9 39 39 H 1.08996 * 109.62831 * 169.03012 * 22 10 9 40 40 H 1.08996 * 109.38575 * 42.98330 * 23 6 4 41 41 H 1.09000 * 109.30414 * 283.22994 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 6 3.5799 1.1911 -0.0005 5 6 4.3348 2.4953 -0.0011 6 6 4.2757 -0.0086 -0.0005 7 6 3.5858 -1.2018 0.0029 8 6 2.1985 -1.1943 0.0005 9 6 4.2956 -2.5303 0.0127 10 7 5.6942 -2.3680 -0.3968 11 6 5.7909 -2.0588 -1.8297 12 1 5.3015 -1.1056 -2.0295 13 6 7.2638 -1.9706 -2.2341 14 6 5.1159 -3.1465 -2.6249 15 1 5.0186 -4.1385 -2.2090 16 6 4.6225 -2.8752 -3.8835 17 7 4.6575 -1.6472 -4.3529 18 14 3.9041 -4.2519 -4.9217 19 1 2.7527 -4.8607 -4.2086 20 1 3.4466 -3.7030 -6.2235 21 1 4.9426 -5.2866 -5.1590 22 6 6.3442 -1.3251 0.4128 23 6 5.7823 0.0341 -0.0049 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6621 2.1334 0.0012 28 1 4.5160 2.8097 -1.0290 29 1 3.7469 3.2557 0.5131 30 1 5.2875 2.3641 0.5120 31 1 1.6566 -2.1285 0.0005 32 1 3.7953 -3.2113 -0.6758 33 1 4.2608 -2.9495 1.0181 34 1 7.3368 -1.8375 -3.3134 35 1 7.7285 -1.1225 -1.7312 36 1 7.7754 -2.8888 -1.9458 37 1 5.0996 -0.9472 -3.8474 38 1 6.1363 -1.4985 1.4686 39 1 7.4202 -1.3452 0.2404 40 1 6.1247 0.7974 0.6939 41 1 6.1330 0.2780 -1.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186496359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:04 Heat of formation + Delta-G solvation = 11.454657 kcal Electronic energy + Delta-G solvation = -20367.043496 eV Core-core repulsion = 17631.748631 eV Total energy + Delta-G solvation = -2735.294865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09691 -37.28967 -33.94149 -33.23094 -31.57375 -30.07477 -28.90795 -27.21943 -26.04604 -24.55458 -23.74701 -22.37089 -20.73493 -20.08996 -18.43828 -16.38394 -15.97676 -15.30425 -14.82680 -14.54424 -13.96502 -13.75002 -13.66091 -13.28659 -13.03624 -12.93332 -12.68606 -12.29156 -12.16087 -11.83690 -11.68817 -11.40322 -11.32396 -11.08928 -10.96160 -10.75289 -10.65153 -10.64177 -10.25676 -10.12221 -10.05065 -9.81402 -8.45768 -8.34571 -8.03122 -7.86744 -7.25521 -6.29829 -4.00838 1.80751 1.86437 3.44832 3.46758 3.65144 4.13718 4.53881 4.93914 5.09216 5.10898 5.28605 5.35355 5.42543 5.52414 5.54531 5.61598 5.76498 5.77244 5.81517 5.86322 5.97899 6.03734 6.08640 6.09277 6.22179 6.38592 6.39803 6.49645 6.57013 6.58754 6.73343 6.74602 6.89669 6.95771 7.00301 7.12030 7.23418 7.49115 7.53372 7.92338 8.06197 8.42984 8.63158 8.92908 9.70874 11.06723 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.008641 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.640069 B = 3239.466280 C = 4008.945051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.087 4.087 5 C -0.113 4.113 6 C -0.078 4.078 7 C -0.077 4.077 8 C -0.119 4.119 9 C 0.097 3.903 10 N -0.521 5.521 11 C 0.187 3.813 12 H 0.019 0.981 13 C -0.131 4.131 14 C -0.583 4.583 15 H 0.054 0.946 16 C 0.021 3.979 17 N -0.911 5.911 18 Si 1.065 2.935 19 H -0.289 1.289 20 H -0.284 1.284 21 H -0.288 1.288 22 C 0.049 3.951 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.044 0.956 37 H 0.268 0.732 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 5.108 9.844 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.087 4.087 5 C -0.169 4.169 6 C -0.078 4.078 7 C -0.079 4.079 8 C -0.138 4.138 9 C -0.031 4.031 10 N -0.242 5.242 11 C 0.081 3.919 12 H 0.036 0.964 13 C -0.189 4.189 14 C -0.622 4.622 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.547 5.547 18 Si 0.894 3.106 19 H -0.215 1.215 20 H -0.210 1.210 21 H -0.214 1.214 22 C -0.080 4.080 23 C -0.153 4.153 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.498 4.319 8.467 10.128 hybrid contribution 0.314 1.180 1.158 1.683 sum -3.184 5.499 9.625 11.533 Atomic orbital electron populations 1.20721 0.91753 1.01974 1.02044 1.19723 0.95547 0.93292 1.00641 1.20641 0.93323 0.97056 1.03960 1.19729 0.93659 0.94621 1.00703 1.20799 0.99862 0.94130 1.02112 1.19331 0.95272 0.92019 1.01168 1.20512 0.93934 0.96635 0.96782 1.20885 0.93652 0.97242 1.01972 1.21057 0.89099 0.92691 1.00268 1.62748 1.12652 1.42185 1.06618 1.19541 0.92690 0.96958 0.82739 0.96389 1.21912 0.98635 0.98349 1.00028 1.21820 1.41087 0.97074 1.02233 0.92771 1.25736 0.95764 1.00530 0.96336 1.70784 1.41119 1.00818 1.42006 0.83596 0.76232 0.74568 0.76214 1.21533 1.20960 1.21418 1.22185 0.99175 0.89155 0.97436 1.21119 0.91951 0.99902 1.02322 0.91453 0.91895 0.92156 0.86933 0.91405 0.92198 0.91520 0.86532 0.87925 0.91645 0.93364 0.96462 0.93650 0.92055 0.92071 0.90916 0.91389 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.02 36.01 0.36 -1.05 16 2 C -0.09 -1.55 5.87 -104.69 -0.62 -2.16 16 3 C -0.13 -2.19 9.35 -39.65 -0.37 -2.56 16 4 C -0.09 -1.52 5.88 -104.54 -0.62 -2.13 16 5 C -0.11 -1.57 9.55 36.01 0.34 -1.23 16 6 C -0.08 -1.50 5.06 -104.60 -0.53 -2.02 16 7 C -0.08 -1.55 5.32 -104.63 -0.56 -2.10 16 8 C -0.12 -2.21 9.31 -39.49 -0.37 -2.58 16 9 C 0.10 2.01 5.37 -5.15 -0.03 1.98 16 10 N -0.52 -11.26 4.88 -229.59 -1.12 -12.38 16 11 C 0.19 4.61 1.06 -68.86 -0.07 4.54 16 12 H 0.02 0.50 4.08 -51.93 -0.21 0.29 16 13 C -0.13 -3.03 8.68 37.16 0.32 -2.71 16 14 C -0.58 -16.04 6.92 -34.44 -0.24 -16.28 16 15 H 0.05 1.51 7.60 -52.49 -0.40 1.12 16 16 C 0.02 0.59 5.45 -17.82 -0.10 0.49 16 17 N -0.91 -27.38 13.62 55.43 0.76 -26.62 16 18 Si 1.07 25.29 29.91 -169.99 -5.08 20.21 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.05 0.90 5.45 -3.73 -0.02 0.88 16 23 C -0.11 -2.05 4.40 -27.93 -0.12 -2.17 16 24 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.71 8.08 -51.92 -0.42 0.29 16 30 H 0.07 0.86 6.04 -51.93 -0.31 0.55 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.10 2.34 6.48 -51.93 -0.34 2.00 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.34 6.36 -51.93 -0.33 0.01 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.27 8.11 6.66 -40.82 -0.27 7.84 16 38 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 39 H 0.07 1.26 6.87 -51.93 -0.36 0.91 16 40 H 0.07 1.02 6.41 -51.93 -0.33 0.69 16 41 H 0.08 1.55 6.27 -51.93 -0.33 1.22 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -30.35 313.31 -9.64 -39.99 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.31 Total: 3.19 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -2.61 Total: -29.10 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.36 Total: -39.00 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.35 -9.64 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186496359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.447 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds