Wall clock time and date at job start Mon Mar 30 2020 07:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 120.06234 * 2 1 4 4 C 1.38029 * 119.82982 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.83032 * 179.97438 * 4 3 2 6 6 C 1.38680 * 120.34666 * 359.97291 * 4 3 2 7 7 C 1.37832 * 119.84732 * 359.86321 * 6 4 3 8 8 C 1.38009 * 120.07110 * 179.97438 * 2 1 3 9 9 C 1.50628 * 121.84751 * 180.42855 * 7 6 4 10 10 N 1.46638 * 110.49159 * 342.44870 * 9 7 6 11 11 C 1.46906 * 111.00193 * 289.11804 * 10 9 7 12 12 H 1.09001 * 109.46873 * 62.98778 * 11 10 9 13 13 C 1.52995 * 109.46982 * 182.98596 * 11 10 9 14 14 C 1.50702 * 109.46889 * 302.98690 * 11 10 9 15 15 H 1.08000 * 120.00316 * 335.25334 * 14 11 10 16 16 C 1.37878 * 119.99452 * 155.25712 * 14 11 10 17 17 N 1.31515 * 120.00223 * 355.29754 * 16 14 11 18 18 Si 1.86801 * 119.99586 * 175.30234 * 16 14 11 19 19 H 1.48487 * 109.47388 * 59.99914 * 18 16 14 20 20 H 1.48503 * 109.46974 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47113 * 299.99408 * 18 16 14 22 22 C 1.47163 * 110.24728 * 52.53898 * 10 9 7 23 23 C 1.50723 * 118.49045 * 179.83741 * 6 4 3 24 24 H 1.09008 * 109.46824 * 90.00029 * 1 2 3 25 25 H 1.08997 * 109.46794 * 209.99735 * 1 2 3 26 26 H 1.09002 * 109.47385 * 330.00003 * 1 2 3 27 27 H 1.08000 * 120.08847 * 0.07549 * 3 2 1 28 28 H 1.09006 * 109.46632 * 270.02596 * 5 4 3 29 29 H 1.09009 * 109.47046 * 30.01787 * 5 4 3 30 30 H 1.09000 * 109.47778 * 150.02079 * 5 4 3 31 31 H 1.08001 * 119.80764 * 0.02562 * 8 2 1 32 32 H 1.08997 * 109.31134 * 222.12709 * 9 7 6 33 33 H 1.08990 * 109.28203 * 102.75188 * 9 7 6 34 34 H 1.08995 * 109.46927 * 174.55154 * 13 11 10 35 35 H 1.09000 * 109.47437 * 294.54870 * 13 11 10 36 36 H 1.09002 * 109.47376 * 54.54998 * 13 11 10 37 37 H 0.97003 * 119.99664 * 5.34334 * 17 16 14 38 38 H 1.08996 * 109.62792 * 48.43713 * 22 10 9 39 39 H 1.08996 * 109.62831 * 169.03012 * 22 10 9 40 40 H 1.08996 * 109.38575 * 42.98330 * 23 6 4 41 41 H 1.09000 * 109.30414 * 283.22994 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 6 3.5799 1.1911 -0.0005 5 6 4.3348 2.4953 -0.0011 6 6 4.2757 -0.0086 -0.0005 7 6 3.5858 -1.2018 0.0029 8 6 2.1985 -1.1943 0.0005 9 6 4.2956 -2.5303 0.0127 10 7 5.6942 -2.3680 -0.3968 11 6 5.7909 -2.0588 -1.8297 12 1 5.3015 -1.1056 -2.0295 13 6 7.2638 -1.9706 -2.2341 14 6 5.1159 -3.1465 -2.6249 15 1 5.0186 -4.1385 -2.2090 16 6 4.6225 -2.8752 -3.8835 17 7 4.6575 -1.6472 -4.3529 18 14 3.9041 -4.2519 -4.9217 19 1 2.7527 -4.8607 -4.2086 20 1 3.4466 -3.7030 -6.2235 21 1 4.9426 -5.2866 -5.1590 22 6 6.3442 -1.3251 0.4128 23 6 5.7823 0.0341 -0.0049 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6621 2.1334 0.0012 28 1 4.5160 2.8097 -1.0290 29 1 3.7469 3.2557 0.5131 30 1 5.2875 2.3641 0.5120 31 1 1.6566 -2.1285 0.0005 32 1 3.7953 -3.2113 -0.6758 33 1 4.2608 -2.9495 1.0181 34 1 7.3368 -1.8375 -3.3134 35 1 7.7285 -1.1225 -1.7312 36 1 7.7754 -2.8888 -1.9458 37 1 5.0996 -0.9472 -3.8474 38 1 6.1363 -1.4985 1.4686 39 1 7.4202 -1.3452 0.2404 40 1 6.1247 0.7974 0.6939 41 1 6.1330 0.2780 -1.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186496359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:04 Heat of formation + Delta-G solvation = -5.618553 kcal Electronic energy + Delta-G solvation = -20367.783846 eV Core-core repulsion = 17631.748631 eV Total energy + Delta-G solvation = -2736.035215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54402 -38.82720 -35.54401 -34.88792 -33.12767 -31.59372 -30.63233 -28.41968 -27.44976 -26.51863 -25.35471 -23.94580 -22.32519 -21.48531 -20.11446 -18.29089 -17.46667 -16.67954 -16.50824 -16.17591 -15.59840 -15.36892 -15.17145 -14.78220 -14.31681 -14.19641 -13.89176 -13.75515 -13.52266 -13.38092 -13.15562 -13.05465 -12.90427 -12.74630 -12.66830 -12.44040 -12.21908 -12.07899 -11.97716 -11.82905 -11.62185 -11.42327 -10.53254 -10.44577 -9.40828 -9.23919 -8.99579 -8.52845 -6.24678 0.45087 0.48218 1.50931 1.58388 1.76993 2.56821 2.77154 3.19672 3.36991 3.78363 3.87891 3.96025 4.04424 4.17499 4.25067 4.39915 4.44844 4.55316 4.62199 4.63976 4.68292 4.73609 4.78881 4.79820 4.80669 4.85450 4.91974 4.95335 5.03621 5.04895 5.06975 5.20708 5.30678 5.39527 5.57940 5.60184 5.68550 5.78587 6.00506 6.09395 6.19903 6.48008 6.56372 6.80203 7.54273 8.82298 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.008641 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.640069 B = 3239.466280 C = 4008.945051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.097 4.097 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.104 4.104 8 C -0.142 4.142 9 C 0.102 3.898 10 N -0.530 5.530 11 C 0.194 3.806 12 H -0.007 1.007 13 C -0.121 4.121 14 C -0.586 4.586 15 H 0.043 0.957 16 C -0.027 4.027 17 N -0.938 5.938 18 Si 1.106 2.894 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.271 1.271 22 C 0.049 3.951 23 C -0.106 4.106 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 5.931 11.112 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.097 4.097 5 C -0.166 4.166 6 C -0.104 4.104 7 C -0.105 4.105 8 C -0.161 4.161 9 C -0.027 4.027 10 N -0.252 5.252 11 C 0.087 3.913 12 H 0.011 0.989 13 C -0.179 4.179 14 C -0.625 4.625 15 H 0.062 0.938 16 C -0.226 4.226 17 N -0.576 5.576 18 Si 0.929 3.071 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.079 4.079 23 C -0.144 4.144 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.160 0.840 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.997 5.135 9.766 11.736 hybrid contribution 0.452 0.948 0.851 1.351 sum -3.546 6.083 10.617 12.740 Atomic orbital electron populations 1.20775 0.89074 1.03779 1.02574 1.20182 0.97629 0.92745 0.99094 1.21082 0.93385 0.98203 1.02948 1.20188 0.94481 0.95418 0.99604 1.20839 1.00407 0.92988 1.02336 1.19602 0.96072 0.92527 1.02186 1.20584 0.94798 0.96584 0.98559 1.21106 0.93501 0.98455 1.03042 1.20933 0.88506 0.92937 1.00308 1.62665 1.13537 1.43731 1.05217 1.19307 0.92816 0.94710 0.84486 0.98941 1.21747 0.97949 0.99559 0.98639 1.22105 1.40542 0.97322 1.02489 0.93826 1.27002 0.96092 1.01601 0.97863 1.70904 1.42890 1.01425 1.42348 0.83067 0.76582 0.72674 0.74753 1.19944 1.21319 1.19659 1.22296 0.99317 0.88489 0.97835 1.21038 0.91367 1.00403 1.01628 0.91371 0.90815 0.89736 0.84036 0.91802 0.89618 0.90532 0.86174 0.91110 0.89679 0.95763 0.93810 0.93403 0.93492 0.90095 0.89941 0.88338 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 10.02 71.24 0.71 -1.81 16 2 C -0.10 -3.12 5.87 -19.91 -0.12 -3.24 16 3 C -0.14 -4.32 9.35 22.23 0.21 -4.11 16 4 C -0.10 -3.23 5.88 -19.81 -0.12 -3.35 16 5 C -0.11 -2.79 9.55 71.24 0.68 -2.11 16 6 C -0.10 -3.94 5.06 -19.85 -0.10 -4.04 16 7 C -0.10 -4.20 5.32 -19.87 -0.11 -4.31 16 8 C -0.14 -5.32 9.31 22.33 0.21 -5.11 16 9 C 0.10 4.25 5.37 85.58 0.46 4.71 16 10 N -0.53 -22.95 4.88 -880.29 -4.29 -27.25 16 11 C 0.19 9.75 1.06 44.17 0.05 9.79 16 12 H -0.01 -0.39 4.08 -2.39 -0.01 -0.40 16 13 C -0.12 -5.62 8.68 71.98 0.62 -4.99 16 14 C -0.59 -32.96 6.92 25.60 0.18 -32.78 16 15 H 0.04 2.49 7.60 -2.91 -0.02 2.47 16 16 C -0.03 -1.57 5.45 84.65 0.46 -1.11 16 17 N -0.94 -57.86 13.62 21.45 0.29 -57.57 16 18 Si 1.11 51.40 29.91 68.60 2.05 53.45 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.05 1.71 5.45 86.22 0.47 2.18 16 23 C -0.11 -3.68 4.40 29.82 0.13 -3.55 16 24 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 26 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.72 8.08 -2.38 -0.02 1.70 16 30 H 0.08 1.77 6.04 -2.39 -0.01 1.75 16 31 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.07 3.36 6.48 -2.39 -0.02 3.34 16 33 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 1.76 6.36 -2.39 -0.02 1.74 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.25 16.01 6.66 -92.71 -0.62 15.39 16 38 H 0.08 2.52 8.05 -2.39 -0.02 2.50 16 39 H 0.08 2.71 6.87 -2.39 -0.02 2.69 16 40 H 0.10 2.73 6.41 -2.39 -0.02 2.72 16 41 H 0.05 2.14 6.27 -2.39 -0.01 2.12 16 Total: -1.00 -66.68 313.31 2.95 -63.73 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.16 Total: 21.46 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 3.74 Total: -53.82 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -4.00 Total: -84.82 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -66.68 2.95 -63.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186496359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.116 kcal (2) G-P(sol) polarization free energy of solvation -66.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds