Wall clock time and date at job start Mon Mar 30 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 120.06814 * 2 1 4 4 C 1.38030 * 119.82585 * 180.09277 * 3 2 1 5 5 C 1.50702 * 119.82286 * 179.97438 * 4 3 2 6 6 C 1.38678 * 120.35613 * 0.02562 * 4 3 2 7 7 C 1.37547 * 119.91871 * 0.04202 * 6 4 3 8 8 C 1.38018 * 120.06255 * 180.02562 * 2 1 3 9 9 C 1.50627 * 122.05585 * 180.39915 * 7 6 4 10 10 N 1.46634 * 110.32155 * 342.26739 * 9 7 6 11 11 C 1.46896 * 110.99781 * 176.03458 * 10 9 7 12 12 H 1.08996 * 109.47442 * 178.95132 * 11 10 9 13 13 C 1.53003 * 109.47298 * 58.95201 * 11 10 9 14 14 C 1.50705 * 109.47576 * 298.95268 * 11 10 9 15 15 H 1.07998 * 119.99304 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00340 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99959 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99926 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46861 * 90.00434 * 18 16 14 20 20 H 1.48495 * 109.46961 * 210.00124 * 18 16 14 21 21 H 1.48499 * 109.47270 * 330.00254 * 18 16 14 22 22 C 1.47160 * 110.24462 * 52.62119 * 10 9 7 23 23 C 1.50714 * 118.49199 * 179.81705 * 6 4 3 24 24 H 1.09005 * 109.47171 * 89.99563 * 1 2 3 25 25 H 1.09001 * 109.47394 * 209.99954 * 1 2 3 26 26 H 1.08997 * 109.46979 * 330.00290 * 1 2 3 27 27 H 1.07996 * 120.08564 * 0.12511 * 3 2 1 28 28 H 1.08999 * 109.47228 * 270.02517 * 5 4 3 29 29 H 1.08999 * 109.47454 * 30.02576 * 5 4 3 30 30 H 1.09003 * 109.47328 * 150.02462 * 5 4 3 31 31 H 1.08001 * 119.81254 * 359.96319 * 8 2 1 32 32 H 1.09002 * 109.30083 * 222.05721 * 9 7 6 33 33 H 1.08998 * 109.30276 * 102.47445 * 9 7 6 34 34 H 1.09004 * 109.46626 * 60.00062 * 13 11 10 35 35 H 1.08998 * 109.47431 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47313 * 300.00365 * 13 11 10 37 37 H 0.96999 * 119.99690 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.63522 * 48.40498 * 22 10 9 39 39 H 1.08997 * 109.63675 * 168.99804 * 22 10 9 40 40 H 1.09008 * 109.38921 * 43.13042 * 23 6 4 41 41 H 1.08995 * 109.30987 * 283.37925 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1966 0.0000 4 6 3.5800 1.1907 -0.0019 5 6 4.3350 2.4950 -0.0025 6 6 4.2758 -0.0089 -0.0044 7 6 3.5887 -1.2005 -0.0058 8 6 2.1984 -1.1945 -0.0005 9 6 4.2953 -2.5307 0.0004 10 7 5.6931 -2.3668 -0.4114 11 6 6.4213 -3.6393 -0.3205 12 1 7.4502 -3.4935 -0.6492 13 6 5.7432 -4.6800 -1.2139 14 6 6.4137 -4.1217 1.1072 15 1 5.9171 -3.5411 1.8706 16 6 7.0397 -5.3046 1.4387 17 7 7.6439 -6.0117 0.5089 18 14 7.0308 -5.9020 3.2085 19 1 5.8387 -6.7577 3.4361 20 1 8.2624 -6.6889 3.4715 21 1 6.9843 -4.7344 4.1249 22 6 6.3447 -1.3271 0.4010 23 6 5.7823 0.0338 -0.0107 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6622 2.1333 0.0020 28 1 4.5152 2.8100 -1.0303 29 1 3.7477 3.2550 0.5128 30 1 5.2882 2.3633 0.5095 31 1 1.6563 -2.1286 -0.0003 32 1 3.7934 -3.2085 -0.6902 33 1 4.2628 -2.9513 1.0054 34 1 5.7488 -4.3311 -2.2466 35 1 6.2838 -5.6241 -1.1469 36 1 4.7142 -4.8259 -0.8853 37 1 8.0846 -6.8437 0.7422 38 1 6.1386 -1.5044 1.4566 39 1 7.4204 -1.3467 0.2268 40 1 6.1257 0.7944 0.6906 41 1 6.1317 0.2816 -1.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186496381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:07 Heat of formation + Delta-G solvation = 11.879088 kcal Electronic energy + Delta-G solvation = -19706.371938 eV Core-core repulsion = 16971.095478 eV Total energy + Delta-G solvation = -2735.276461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90486 -37.16629 -34.25111 -33.19318 -31.59362 -30.66871 -28.12058 -27.40535 -26.06664 -25.14299 -24.11879 -21.96121 -20.36424 -20.02876 -18.58292 -16.34300 -15.81646 -15.39166 -15.00837 -14.59303 -14.14191 -13.65073 -13.61223 -13.23231 -13.16719 -12.86219 -12.76032 -12.39950 -12.14064 -11.83003 -11.80507 -11.72104 -11.26130 -11.18608 -11.01367 -10.70903 -10.67198 -10.44773 -10.28377 -10.09681 -9.81645 -9.60574 -9.19997 -8.41181 -8.22235 -7.99483 -7.15317 -6.00569 -4.13884 1.66143 1.73014 3.25639 3.33069 3.36001 4.00601 4.38405 4.94836 4.97543 5.04515 5.19084 5.26182 5.31942 5.40183 5.45029 5.63089 5.67197 5.72483 5.83198 5.86986 5.93288 5.98653 6.03018 6.11948 6.31380 6.41821 6.47749 6.53866 6.65599 6.78197 6.83754 6.87965 6.91753 7.03846 7.13279 7.17262 7.38585 7.55762 7.70435 7.96828 8.14017 8.29633 8.42024 8.95837 9.54076 10.99361 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.005582 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.357623 B = 5015.060224 C = 5315.710668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.071 4.071 7 C -0.055 4.055 8 C -0.128 4.128 9 C 0.093 3.907 10 N -0.531 5.531 11 C 0.205 3.795 12 H 0.042 0.958 13 C -0.133 4.133 14 C -0.544 4.544 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.886 5.886 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.062 3.938 23 C -0.077 4.077 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.015 0.985 35 H 0.084 0.916 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 12.656 -1.192 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.072 4.072 7 C -0.055 4.055 8 C -0.146 4.146 9 C -0.035 4.035 10 N -0.255 5.255 11 C 0.099 3.901 12 H 0.059 0.941 13 C -0.191 4.191 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.133 4.133 17 N -0.524 5.524 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.067 4.067 23 C -0.114 4.114 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.862 12.625 -1.725 15.521 hybrid contribution -0.079 -0.764 1.867 2.019 sum -8.941 11.861 0.142 14.854 Atomic orbital electron populations 1.20722 0.91727 1.02245 1.01857 1.19698 0.95515 0.93194 1.00952 1.20670 0.93379 0.97054 1.04035 1.19793 0.93591 0.94752 1.00772 1.20810 1.00149 0.94046 1.01997 1.19404 0.95875 0.91619 1.00264 1.19980 0.93197 0.95474 0.96860 1.20989 0.93561 0.97354 1.02701 1.20907 0.90454 0.91712 1.00468 1.62829 1.01035 1.09764 1.51865 1.19326 0.93134 0.83487 0.94127 0.94060 1.21819 0.99197 1.02240 0.95810 1.21706 1.35225 1.06828 0.94517 0.92617 1.24896 0.94959 0.96526 0.96951 1.69880 1.35370 1.14868 1.32287 0.86680 0.77529 0.78865 0.85458 1.20681 1.21138 1.20049 1.21885 0.98509 0.90311 0.95951 1.20656 0.90925 0.98257 1.01577 0.91614 0.91815 0.92058 0.86875 0.91472 0.92190 0.91226 0.86464 0.90175 0.92368 0.96587 0.89717 0.95487 0.92876 0.94486 0.91063 0.91313 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.09 -1.32 5.87 -104.69 -0.62 -1.93 16 3 C -0.13 -1.84 9.35 -39.65 -0.37 -2.21 16 4 C -0.09 -1.30 5.88 -104.53 -0.62 -1.92 16 5 C -0.11 -1.29 9.55 36.01 0.34 -0.95 16 6 C -0.07 -1.21 5.76 -104.70 -0.60 -1.81 16 7 C -0.05 -0.99 5.79 -104.61 -0.61 -1.60 16 8 C -0.13 -2.04 9.32 -39.37 -0.37 -2.40 16 9 C 0.09 1.89 4.50 -5.16 -0.02 1.86 16 10 N -0.53 -11.54 4.69 -229.59 -1.08 -12.62 16 11 C 0.21 5.11 2.36 -68.86 -0.16 4.95 16 12 H 0.04 1.13 8.06 -51.93 -0.42 0.71 16 13 C -0.13 -3.21 8.69 37.16 0.32 -2.89 16 14 C -0.54 -14.48 7.13 -34.44 -0.25 -14.72 16 15 H 0.06 1.50 5.85 -52.49 -0.31 1.19 16 16 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 17 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.06 1.23 4.98 -3.73 -0.02 1.21 16 23 C -0.08 -1.26 5.22 -27.93 -0.15 -1.40 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.17 16 30 H 0.07 0.76 6.04 -51.93 -0.31 0.45 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.08 1.63 6.47 -51.93 -0.34 1.29 16 33 H 0.06 1.30 6.39 -51.93 -0.33 0.97 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 36 H 0.03 0.62 6.47 -51.93 -0.34 0.28 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.04 0.78 7.06 -51.93 -0.37 0.42 16 39 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16 40 H 0.07 0.97 6.42 -51.92 -0.33 0.64 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -28.18 314.66 -9.97 -38.16 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.40 Total: 0.67 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.84 Total: -22.82 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.45 Total: -36.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.18 -9.97 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186496381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.036 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds