Wall clock time and date at job start Mon Mar 30 2020 07:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 120.06814 * 2 1 4 4 C 1.38030 * 119.82585 * 180.09277 * 3 2 1 5 5 C 1.50702 * 119.82286 * 179.97438 * 4 3 2 6 6 C 1.38678 * 120.35613 * 0.02562 * 4 3 2 7 7 C 1.37547 * 119.91871 * 0.04202 * 6 4 3 8 8 C 1.38018 * 120.06255 * 180.02562 * 2 1 3 9 9 C 1.50627 * 122.05585 * 180.39915 * 7 6 4 10 10 N 1.46634 * 110.32155 * 342.26739 * 9 7 6 11 11 C 1.46896 * 110.99781 * 176.03458 * 10 9 7 12 12 H 1.08996 * 109.47442 * 178.95132 * 11 10 9 13 13 C 1.53003 * 109.47298 * 58.95201 * 11 10 9 14 14 C 1.50705 * 109.47576 * 298.95268 * 11 10 9 15 15 H 1.07998 * 119.99304 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00340 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99959 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99926 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46861 * 90.00434 * 18 16 14 20 20 H 1.48495 * 109.46961 * 210.00124 * 18 16 14 21 21 H 1.48499 * 109.47270 * 330.00254 * 18 16 14 22 22 C 1.47160 * 110.24462 * 52.62119 * 10 9 7 23 23 C 1.50714 * 118.49199 * 179.81705 * 6 4 3 24 24 H 1.09005 * 109.47171 * 89.99563 * 1 2 3 25 25 H 1.09001 * 109.47394 * 209.99954 * 1 2 3 26 26 H 1.08997 * 109.46979 * 330.00290 * 1 2 3 27 27 H 1.07996 * 120.08564 * 0.12511 * 3 2 1 28 28 H 1.08999 * 109.47228 * 270.02517 * 5 4 3 29 29 H 1.08999 * 109.47454 * 30.02576 * 5 4 3 30 30 H 1.09003 * 109.47328 * 150.02462 * 5 4 3 31 31 H 1.08001 * 119.81254 * 359.96319 * 8 2 1 32 32 H 1.09002 * 109.30083 * 222.05721 * 9 7 6 33 33 H 1.08998 * 109.30276 * 102.47445 * 9 7 6 34 34 H 1.09004 * 109.46626 * 60.00062 * 13 11 10 35 35 H 1.08998 * 109.47431 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47313 * 300.00365 * 13 11 10 37 37 H 0.96999 * 119.99690 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.63522 * 48.40498 * 22 10 9 39 39 H 1.08997 * 109.63675 * 168.99804 * 22 10 9 40 40 H 1.09008 * 109.38921 * 43.13042 * 23 6 4 41 41 H 1.08995 * 109.30987 * 283.37925 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1966 0.0000 4 6 3.5800 1.1907 -0.0019 5 6 4.3350 2.4950 -0.0025 6 6 4.2758 -0.0089 -0.0044 7 6 3.5887 -1.2005 -0.0058 8 6 2.1984 -1.1945 -0.0005 9 6 4.2953 -2.5307 0.0004 10 7 5.6931 -2.3668 -0.4114 11 6 6.4213 -3.6393 -0.3205 12 1 7.4502 -3.4935 -0.6492 13 6 5.7432 -4.6800 -1.2139 14 6 6.4137 -4.1217 1.1072 15 1 5.9171 -3.5411 1.8706 16 6 7.0397 -5.3046 1.4387 17 7 7.6439 -6.0117 0.5089 18 14 7.0308 -5.9020 3.2085 19 1 5.8387 -6.7577 3.4361 20 1 8.2624 -6.6889 3.4715 21 1 6.9843 -4.7344 4.1249 22 6 6.3447 -1.3271 0.4010 23 6 5.7823 0.0338 -0.0107 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6622 2.1333 0.0020 28 1 4.5152 2.8100 -1.0303 29 1 3.7477 3.2550 0.5128 30 1 5.2882 2.3633 0.5095 31 1 1.6563 -2.1286 -0.0003 32 1 3.7934 -3.2085 -0.6902 33 1 4.2628 -2.9513 1.0054 34 1 5.7488 -4.3311 -2.2466 35 1 6.2838 -5.6241 -1.1469 36 1 4.7142 -4.8259 -0.8853 37 1 8.0846 -6.8437 0.7422 38 1 6.1386 -1.5044 1.4566 39 1 7.4204 -1.3467 0.2268 40 1 6.1257 0.7944 0.6906 41 1 6.1317 0.2816 -1.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186496381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:06 Heat of formation + Delta-G solvation = -2.857161 kcal Electronic energy + Delta-G solvation = -19707.010950 eV Core-core repulsion = 16971.095478 eV Total energy + Delta-G solvation = -2735.915472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19442 -38.75169 -35.66552 -34.74842 -33.16298 -32.09642 -29.82679 -28.42558 -27.43661 -27.01184 -25.64894 -23.35993 -21.87687 -21.47832 -20.10938 -18.22549 -17.35784 -16.67543 -16.57830 -16.24680 -15.55833 -15.09890 -15.06866 -14.57492 -14.52464 -14.05126 -13.89227 -13.65748 -13.53020 -13.35770 -13.19143 -12.95489 -12.86292 -12.77946 -12.63067 -12.47456 -12.19252 -12.00729 -11.91244 -11.81833 -11.38356 -11.28888 -11.12500 -10.51982 -9.46070 -9.17376 -8.96855 -8.07720 -6.29892 0.50450 0.53125 1.35020 1.36871 1.45784 2.37495 2.82900 3.11999 3.35419 3.86429 3.88716 4.02702 4.12830 4.25832 4.44228 4.49357 4.59297 4.61139 4.71023 4.76829 4.82526 4.84899 4.87557 4.91457 4.93380 4.99109 5.05517 5.09502 5.14794 5.17069 5.23957 5.35779 5.47708 5.49068 5.62621 5.69490 5.73844 5.81947 5.99499 6.13983 6.23560 6.35787 6.55072 6.89375 7.41128 8.89000 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.005582 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.357623 B = 5015.060224 C = 5315.710668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.090 4.090 5 C -0.112 4.112 6 C -0.094 4.094 7 C -0.084 4.084 8 C -0.142 4.142 9 C 0.104 3.896 10 N -0.532 5.532 11 C 0.209 3.791 12 H 0.011 0.989 13 C -0.120 4.120 14 C -0.551 4.551 15 H 0.046 0.954 16 C 0.024 3.976 17 N -0.911 5.911 18 Si 0.947 3.053 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.062 3.938 23 C -0.065 4.065 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.016 0.984 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 15.024 -0.776 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.090 4.090 5 C -0.169 4.169 6 C -0.094 4.094 7 C -0.084 4.084 8 C -0.161 4.161 9 C -0.025 4.025 10 N -0.255 5.255 11 C 0.101 3.899 12 H 0.029 0.971 13 C -0.179 4.179 14 C -0.590 4.590 15 H 0.065 0.935 16 C -0.177 4.177 17 N -0.550 5.550 18 Si 0.773 3.227 19 H -0.202 1.202 20 H -0.205 1.205 21 H -0.200 1.200 22 C -0.066 4.066 23 C -0.102 4.102 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.517 15.005 -1.310 18.370 hybrid contribution 0.383 -1.437 1.709 2.266 sum -10.133 13.569 0.399 16.940 Atomic orbital electron populations 1.20784 0.89114 1.03462 1.03003 1.20110 0.97449 0.92502 0.99158 1.21112 0.93263 0.98225 1.02364 1.20146 0.94343 0.95099 0.99382 1.20875 1.00177 0.92716 1.03087 1.19551 0.96028 0.92300 1.01565 1.19874 0.94215 0.94505 0.99795 1.21126 0.92846 0.98721 1.03387 1.20727 0.89681 0.93582 0.98466 1.62776 1.01700 1.08597 1.52474 1.19131 0.92079 0.85228 0.93417 0.97083 1.21642 0.98788 1.00991 0.96443 1.21851 1.35019 1.06913 0.95174 0.93537 1.25597 0.94722 0.96716 1.00620 1.69992 1.35901 1.15165 1.33923 0.85726 0.77698 0.78265 0.80983 1.20187 1.20507 1.19961 1.21923 0.98256 0.91898 0.94530 1.20574 0.90969 0.96225 1.02457 0.90365 0.91460 0.90062 0.83664 0.90295 0.90047 0.91008 0.86122 0.90963 0.95234 0.95339 0.91918 0.95199 0.92748 0.96575 0.91792 0.88773 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.01 71.24 0.71 -1.20 16 2 C -0.09 -2.35 5.87 -19.91 -0.12 -2.47 16 3 C -0.13 -3.16 9.35 22.23 0.21 -2.95 16 4 C -0.09 -2.37 5.88 -19.81 -0.12 -2.48 16 5 C -0.11 -2.12 9.55 71.24 0.68 -1.44 16 6 C -0.09 -3.10 5.76 -19.92 -0.11 -3.21 16 7 C -0.08 -3.04 5.79 -19.86 -0.11 -3.16 16 8 C -0.14 -4.46 9.32 22.41 0.21 -4.25 16 9 C 0.10 4.39 4.50 85.58 0.39 4.77 16 10 N -0.53 -23.98 4.69 -880.29 -4.13 -28.11 16 11 C 0.21 10.84 2.36 44.17 0.10 10.94 16 12 H 0.01 0.64 8.06 -2.39 -0.02 0.62 16 13 C -0.12 -6.04 8.69 71.98 0.63 -5.42 16 14 C -0.55 -30.38 7.13 25.60 0.18 -30.20 16 15 H 0.05 2.61 5.85 -2.91 -0.02 2.59 16 16 C 0.02 1.31 5.30 84.65 0.45 1.75 16 17 N -0.91 -52.28 11.32 21.45 0.24 -52.03 16 18 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.06 2.54 4.98 86.22 0.43 2.97 16 23 C -0.07 -2.08 5.22 29.82 0.16 -1.92 16 24 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.16 8.09 -2.39 -0.02 1.15 16 26 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.07 1.33 6.04 -2.39 -0.01 1.32 16 31 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.07 3.07 6.47 -2.39 -0.02 3.05 16 33 H 0.03 1.40 6.39 -2.39 -0.02 1.39 16 34 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 36 H 0.03 1.43 6.47 -2.39 -0.02 1.41 16 37 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.02 0.71 7.06 -2.39 -0.02 0.69 16 39 H 0.06 2.63 7.97 -2.39 -0.02 2.61 16 40 H 0.09 2.49 6.42 -2.38 -0.02 2.47 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -62.02 314.66 2.82 -59.20 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.01 Total: 13.22 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.68 Total: -38.27 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.89 Total: -80.15 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.02 2.82 -59.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186496381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.342 kcal (2) G-P(sol) polarization free energy of solvation -62.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds