Wall clock time and date at job start Mon Mar 30 2020 07:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00040 * 2 1 4 4 H 1.48506 * 109.46684 * 274.88038 * 3 2 1 5 5 H 1.48503 * 109.47483 * 34.87822 * 3 2 1 6 6 H 1.48496 * 109.47376 * 154.88122 * 3 2 1 7 7 C 1.37879 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00207 * 354.72717 * 7 2 1 9 9 C 1.50701 * 119.99402 * 175.00490 * 7 2 1 10 10 H 1.08998 * 109.54109 * 335.40521 * 9 7 2 11 11 C 1.50747 * 109.54402 * 95.67376 * 9 7 2 12 12 C 1.54168 * 112.61475 * 212.86940 * 11 9 7 13 13 C 1.53809 * 111.97193 * 318.48762 * 12 11 9 14 14 C 1.50825 * 111.61794 * 319.04181 * 13 12 11 15 15 N 1.47621 * 108.03350 * 95.06829 * 14 13 12 16 16 C 1.46901 * 110.99630 * 150.31077 * 15 14 13 17 17 C 1.50696 * 109.47112 * 298.90405 * 16 15 14 18 18 C 1.38231 * 120.00253 * 269.73019 * 17 16 15 19 19 C 1.38236 * 120.00123 * 179.81361 * 18 17 16 20 20 C 1.38240 * 119.99763 * 0.41691 * 19 18 17 21 21 C 1.38236 * 119.99969 * 359.81366 * 20 19 18 22 22 C 1.38233 * 119.99562 * 90.00492 * 17 16 15 23 23 C 1.39782 * 114.77098 * 277.17159 * 15 14 13 24 24 H 0.97000 * 120.00058 * 0.02562 * 1 2 3 25 25 H 1.08997 * 108.85809 * 333.68593 * 11 9 7 26 26 H 1.09007 * 108.85226 * 92.06529 * 11 9 7 27 27 H 1.09003 * 108.98284 * 197.84427 * 12 11 9 28 28 H 1.09003 * 108.91220 * 79.08460 * 12 11 9 29 29 H 1.09007 * 109.05283 * 198.49735 * 13 12 11 30 30 H 1.08998 * 108.99683 * 79.55374 * 13 12 11 31 31 H 1.09000 * 109.74383 * 335.43466 * 14 13 12 32 32 H 1.09002 * 109.78874 * 214.73239 * 14 13 12 33 33 H 1.08995 * 109.47179 * 58.91145 * 16 15 14 34 34 H 1.09009 * 109.46507 * 178.91040 * 16 15 14 35 35 H 1.07998 * 120.00062 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.00535 * 180.20559 * 19 18 17 37 37 H 1.07998 * 120.00086 * 179.79286 * 20 19 18 38 38 H 1.07999 * 119.99919 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00243 * 359.97438 * 22 17 16 40 40 H 1.08997 * 109.02135 * 301.68803 * 23 15 14 41 41 H 1.09003 * 108.95841 * 182.82192 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3935 2.1059 -1.3951 5 1 1.5020 2.6208 0.8006 6 1 3.5945 1.4126 0.5943 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0869 9 6 3.5072 -1.1966 -0.1131 10 1 3.8369 -0.2829 -0.6076 11 6 4.1169 -1.2756 1.2633 12 6 5.4543 -0.5153 1.3638 13 6 6.3362 -0.7357 0.1230 14 6 6.2942 -2.1702 -0.3409 15 7 5.2717 -2.2782 -1.4001 16 6 5.6123 -3.3422 -2.3540 17 6 6.9284 -3.0221 -3.0145 18 6 6.9536 -2.2890 -4.1862 19 6 8.1611 -1.9921 -4.7900 20 6 9.3430 -2.4357 -4.2267 21 6 9.3176 -3.1729 -3.0576 22 6 8.1102 -3.4665 -2.4518 23 6 3.9609 -2.4221 -0.9363 24 1 -0.4850 0.8400 -0.0004 25 1 3.4165 -0.8531 1.9837 26 1 4.2874 -2.3228 1.5135 27 1 5.9925 -0.8597 2.2469 28 1 5.2482 0.5500 1.4676 29 1 7.3651 -0.4704 0.3661 30 1 5.9834 -0.0910 -0.6820 31 1 6.0300 -2.8195 0.4938 32 1 7.2677 -2.4583 -0.7378 33 1 5.6924 -4.2920 -1.8255 34 1 4.8328 -3.4131 -3.1127 35 1 6.0299 -1.9460 -4.6284 36 1 8.1810 -1.4165 -5.7036 37 1 10.2863 -2.2067 -4.7002 38 1 10.2410 -3.5198 -2.6178 39 1 8.0904 -4.0427 -1.5385 40 1 3.9013 -3.3124 -0.3103 41 1 3.2944 -2.5431 -1.7902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215096739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:01 Heat of formation + Delta-G solvation = 23.005393 kcal Electronic energy + Delta-G solvation = -19780.181411 eV Core-core repulsion = 17045.387423 eV Total energy + Delta-G solvation = -2734.793988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71621 -38.28759 -34.56931 -32.87886 -31.50290 -30.95585 -30.65560 -26.99809 -25.56300 -24.25270 -22.78121 -22.47496 -20.89099 -19.81327 -18.48894 -16.95388 -16.65276 -15.65982 -15.27913 -15.13382 -14.38097 -14.22451 -14.14119 -13.70793 -13.38845 -13.14549 -12.71386 -12.60509 -12.45350 -12.03489 -11.54810 -11.45297 -11.23235 -11.05806 -10.92644 -10.72394 -10.47085 -10.35505 -10.13208 -9.63214 -9.50602 -9.21566 -8.87266 -8.83124 -8.65022 -8.45630 -7.61982 -6.02687 -4.01090 1.38505 1.44451 3.34895 3.43578 3.48880 3.78643 4.49443 4.58214 4.87505 4.89665 5.01952 5.13960 5.28720 5.39491 5.42297 5.53365 5.57717 5.70035 5.74376 5.81067 5.93186 6.04671 6.07138 6.10373 6.14110 6.22822 6.40437 6.47323 6.49050 6.53322 6.57857 6.69589 6.74904 6.79978 6.93620 7.04120 7.14235 7.38807 7.61653 7.69358 7.82119 8.10396 8.59919 9.02766 9.61831 11.10567 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.005570 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.885440 B = 5025.361873 C = 5190.315415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.072 3.928 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.510 4.510 8 H 0.070 0.930 9 C 0.023 3.977 10 H 0.044 0.956 11 C -0.111 4.111 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.060 3.940 15 N -0.546 5.546 16 C 0.094 3.906 17 C -0.066 4.066 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.117 4.117 23 C 0.084 3.916 24 H 0.262 0.738 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.006 0.994 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 -5.072 -5.506 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.129 4.129 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.177 1.177 7 C -0.548 4.548 8 H 0.088 0.912 9 C 0.004 3.996 10 H 0.062 0.938 11 C -0.149 4.149 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.066 4.066 15 N -0.269 5.269 16 C -0.033 4.033 17 C -0.067 4.067 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.146 4.146 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.045 4.045 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.024 0.976 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.580 -4.548 -5.702 19.033 hybrid contribution 0.282 0.241 0.508 0.629 sum 17.862 -4.306 -5.194 19.094 Atomic orbital electron populations 1.69923 1.06388 1.26834 1.51046 1.25007 0.94592 0.98966 0.94343 0.86937 0.81115 0.83698 0.78412 1.20540 1.21873 1.17713 1.20954 0.89171 0.94427 1.50232 0.91236 1.18995 0.95646 0.94065 0.90894 0.93800 1.21819 0.94087 0.97990 1.00997 1.22061 0.96900 1.00633 0.96413 1.21323 0.98147 0.96942 0.98574 1.21913 0.94881 0.97288 0.92558 1.58998 1.03563 1.45842 1.18545 1.21049 0.93843 0.92828 0.95611 1.19893 0.94838 0.97048 0.94906 1.21080 0.98096 0.97244 0.95287 1.21140 0.92634 1.00182 1.00072 1.21082 0.97983 0.99065 0.96465 1.21064 0.97604 0.99387 0.96157 1.21059 0.92266 1.00637 0.99554 1.21176 0.86373 0.98161 0.98758 0.92815 0.92345 0.94463 0.93884 0.92778 0.93298 0.90911 0.94424 0.91059 0.94568 0.90031 0.85845 0.86331 0.86557 0.86466 0.86385 0.97645 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.68 26.95 -169.99 -4.58 17.10 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.25 -5.94 5.14 56.52 0.29 -5.65 16 7 C -0.51 -14.19 8.53 -34.44 -0.29 -14.48 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16 9 C 0.02 0.54 1.37 -92.14 -0.13 0.42 16 10 H 0.04 1.07 4.55 -51.93 -0.24 0.83 16 11 C -0.11 -2.35 4.44 -27.25 -0.12 -2.47 16 12 C -0.12 -2.23 5.79 -25.70 -0.15 -2.38 16 13 C -0.11 -1.88 5.41 -27.40 -0.15 -2.03 16 14 C 0.06 0.97 5.16 -4.52 -0.02 0.94 16 15 N -0.55 -9.52 3.96 -241.45 -0.96 -10.48 16 16 C 0.09 1.37 5.14 -4.98 -0.03 1.34 16 17 C -0.07 -0.89 4.87 -104.63 -0.51 -1.40 16 18 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 19 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 22 C -0.12 -1.40 7.73 -39.58 -0.31 -1.70 16 23 C 0.08 1.71 4.31 -6.74 -0.03 1.68 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.06 1.33 7.71 -51.93 -0.40 0.93 16 26 H 0.04 0.75 6.58 -51.92 -0.34 0.41 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.03 6.92 -51.93 -0.36 0.67 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 31 H 0.04 0.62 6.66 -51.93 -0.35 0.27 16 32 H 0.07 1.02 4.46 -51.93 -0.23 0.78 16 33 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.08 1.17 7.77 -51.92 -0.40 0.77 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.29 7.54 -52.49 -0.40 0.89 16 40 H 0.01 0.11 7.55 -51.93 -0.39 -0.28 16 41 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -29.99 309.89 -10.01 -40.00 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.51 Total: 0.68 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.41 Total: -25.00 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.18 Total: -37.45 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.58 Total: 17.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.99 -10.01 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.005 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds