Wall clock time and date at job start Mon Mar 30 2020 07:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00040 * 2 1 4 4 H 1.48506 * 109.46684 * 274.88038 * 3 2 1 5 5 H 1.48503 * 109.47483 * 34.87822 * 3 2 1 6 6 H 1.48496 * 109.47376 * 154.88122 * 3 2 1 7 7 C 1.37879 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00207 * 354.72717 * 7 2 1 9 9 C 1.50701 * 119.99402 * 175.00490 * 7 2 1 10 10 H 1.08998 * 109.54109 * 335.40521 * 9 7 2 11 11 C 1.50747 * 109.54402 * 95.67376 * 9 7 2 12 12 C 1.54168 * 112.61475 * 212.86940 * 11 9 7 13 13 C 1.53809 * 111.97193 * 318.48762 * 12 11 9 14 14 C 1.50825 * 111.61794 * 319.04181 * 13 12 11 15 15 N 1.47621 * 108.03350 * 95.06829 * 14 13 12 16 16 C 1.46901 * 110.99630 * 150.31077 * 15 14 13 17 17 C 1.50696 * 109.47112 * 298.90405 * 16 15 14 18 18 C 1.38231 * 120.00253 * 269.73019 * 17 16 15 19 19 C 1.38236 * 120.00123 * 179.81361 * 18 17 16 20 20 C 1.38240 * 119.99763 * 0.41691 * 19 18 17 21 21 C 1.38236 * 119.99969 * 359.81366 * 20 19 18 22 22 C 1.38233 * 119.99562 * 90.00492 * 17 16 15 23 23 C 1.39782 * 114.77098 * 277.17159 * 15 14 13 24 24 H 0.97000 * 120.00058 * 0.02562 * 1 2 3 25 25 H 1.08997 * 108.85809 * 333.68593 * 11 9 7 26 26 H 1.09007 * 108.85226 * 92.06529 * 11 9 7 27 27 H 1.09003 * 108.98284 * 197.84427 * 12 11 9 28 28 H 1.09003 * 108.91220 * 79.08460 * 12 11 9 29 29 H 1.09007 * 109.05283 * 198.49735 * 13 12 11 30 30 H 1.08998 * 108.99683 * 79.55374 * 13 12 11 31 31 H 1.09000 * 109.74383 * 335.43466 * 14 13 12 32 32 H 1.09002 * 109.78874 * 214.73239 * 14 13 12 33 33 H 1.08995 * 109.47179 * 58.91145 * 16 15 14 34 34 H 1.09009 * 109.46507 * 178.91040 * 16 15 14 35 35 H 1.07998 * 120.00062 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.00535 * 180.20559 * 19 18 17 37 37 H 1.07998 * 120.00086 * 179.79286 * 20 19 18 38 38 H 1.07999 * 119.99919 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00243 * 359.97438 * 22 17 16 40 40 H 1.08997 * 109.02135 * 301.68803 * 23 15 14 41 41 H 1.09003 * 108.95841 * 182.82192 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3935 2.1059 -1.3951 5 1 1.5020 2.6208 0.8006 6 1 3.5945 1.4126 0.5943 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0869 9 6 3.5072 -1.1966 -0.1131 10 1 3.8369 -0.2829 -0.6076 11 6 4.1169 -1.2756 1.2633 12 6 5.4543 -0.5153 1.3638 13 6 6.3362 -0.7357 0.1230 14 6 6.2942 -2.1702 -0.3409 15 7 5.2717 -2.2782 -1.4001 16 6 5.6123 -3.3422 -2.3540 17 6 6.9284 -3.0221 -3.0145 18 6 6.9536 -2.2890 -4.1862 19 6 8.1611 -1.9921 -4.7900 20 6 9.3430 -2.4357 -4.2267 21 6 9.3176 -3.1729 -3.0576 22 6 8.1102 -3.4665 -2.4518 23 6 3.9609 -2.4221 -0.9363 24 1 -0.4850 0.8400 -0.0004 25 1 3.4165 -0.8531 1.9837 26 1 4.2874 -2.3228 1.5135 27 1 5.9925 -0.8597 2.2469 28 1 5.2482 0.5500 1.4676 29 1 7.3651 -0.4704 0.3661 30 1 5.9834 -0.0910 -0.6820 31 1 6.0300 -2.8195 0.4938 32 1 7.2677 -2.4583 -0.7378 33 1 5.6924 -4.2920 -1.8255 34 1 4.8328 -3.4131 -3.1127 35 1 6.0299 -1.9460 -4.6284 36 1 8.1810 -1.4165 -5.7036 37 1 10.2863 -2.2067 -4.7002 38 1 10.2410 -3.5198 -2.6178 39 1 8.0904 -4.0427 -1.5385 40 1 3.9013 -3.3124 -0.3103 41 1 3.2944 -2.5431 -1.7902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215096739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:01 Heat of formation + Delta-G solvation = 6.229724 kcal Electronic energy + Delta-G solvation = -19780.908858 eV Core-core repulsion = 17045.387423 eV Total energy + Delta-G solvation = -2735.521435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89006 -39.49303 -36.07544 -34.72741 -33.05391 -32.14222 -31.70478 -28.44917 -27.16137 -25.74883 -24.33660 -23.36838 -21.91637 -21.37741 -20.09543 -19.01519 -17.56466 -17.10196 -16.48310 -16.23304 -16.03904 -15.66120 -15.56138 -15.12247 -14.68021 -14.54642 -14.21248 -13.78832 -13.58692 -13.39722 -13.06557 -13.04387 -12.84550 -12.68067 -12.15314 -12.00474 -11.92348 -11.78235 -11.64519 -11.45191 -11.15683 -10.97446 -10.80513 -10.60556 -9.70800 -9.59815 -9.01007 -8.27688 -6.29918 0.49827 0.58121 1.35165 1.37387 1.51020 2.37931 2.83435 3.09651 3.32813 3.87455 3.98164 4.07376 4.11282 4.23459 4.29816 4.34173 4.37796 4.41537 4.52761 4.61471 4.67255 4.75075 4.79005 4.83823 4.92806 4.95583 5.04509 5.15602 5.18179 5.23984 5.26701 5.35177 5.51271 5.61860 5.64117 5.69470 5.75849 5.81014 5.85196 6.19023 6.28331 6.36724 6.60834 6.79580 7.36085 8.89321 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.005570 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.885440 B = 5025.361873 C = 5190.315415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.014 3.986 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.230 1.230 7 C -0.512 4.512 8 H 0.028 0.972 9 C 0.025 3.975 10 H 0.037 0.963 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.062 3.938 15 N -0.556 5.556 16 C 0.097 3.903 17 C -0.083 4.083 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.123 4.123 23 C 0.101 3.899 24 H 0.264 0.736 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.001 0.999 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.847 -4.673 -5.622 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.183 4.183 3 Si 0.758 3.242 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.153 1.153 7 C -0.550 4.550 8 H 0.046 0.954 9 C 0.005 3.995 10 H 0.055 0.945 11 C -0.146 4.146 12 C -0.156 4.156 13 C -0.148 4.148 14 C -0.064 4.064 15 N -0.280 5.280 16 C -0.030 4.030 17 C -0.083 4.083 18 C -0.136 4.136 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.029 4.029 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.019 0.981 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 21.677 -4.167 -5.820 22.828 hybrid contribution -0.984 0.003 0.490 1.099 sum 20.693 -4.164 -5.330 21.771 Atomic orbital electron populations 1.70069 1.08274 1.27855 1.53149 1.25857 0.95317 1.02846 0.94238 0.85931 0.80756 0.78876 0.78591 1.20214 1.21723 1.15255 1.21259 0.91845 0.92788 1.49115 0.95394 1.18916 0.92604 0.95071 0.92861 0.94455 1.21653 0.95520 0.98922 0.98511 1.22013 0.95383 0.99626 0.98530 1.21329 0.99443 0.96901 0.97088 1.21975 0.95357 0.96946 0.92125 1.58883 1.02393 1.47344 1.19340 1.21024 0.94826 0.92265 0.94869 1.19789 0.94466 0.98549 0.95516 1.21174 0.98724 0.97988 0.95719 1.21397 0.92348 1.00158 1.00660 1.21460 0.98739 0.98020 0.96258 1.21408 0.98112 0.98630 0.95999 1.21217 0.92181 1.00690 1.00089 1.20784 0.88147 0.96495 0.97437 0.92731 0.94642 0.93812 0.91050 0.93421 0.90170 0.92935 0.94546 0.88699 0.93777 0.90786 0.86635 0.84618 0.83896 0.83845 0.85322 0.98108 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.01 0.82 5.47 84.65 0.46 1.29 16 3 Si 0.93 45.31 26.95 68.60 1.85 47.16 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.23 -10.16 5.14 99.48 0.51 -9.65 16 7 C -0.51 -29.65 8.53 25.60 0.22 -29.43 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 9 C 0.02 1.17 1.37 -11.78 -0.02 1.15 16 10 H 0.04 1.80 4.55 -2.39 -0.01 1.79 16 11 C -0.11 -4.49 4.44 30.26 0.13 -4.35 16 12 C -0.12 -3.96 5.79 31.26 0.18 -3.78 16 13 C -0.11 -3.34 5.41 30.16 0.16 -3.17 16 14 C 0.06 1.82 5.16 85.46 0.44 2.26 16 15 N -0.56 -18.89 3.96 -917.80 -3.64 -22.53 16 16 C 0.10 2.76 5.14 85.56 0.44 3.20 16 17 C -0.08 -2.07 4.87 -19.87 -0.10 -2.17 16 18 C -0.12 -2.87 9.70 22.27 0.22 -2.66 16 19 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 20 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 21 C -0.12 -2.17 10.05 22.27 0.22 -1.94 16 22 C -0.12 -2.58 7.73 22.27 0.17 -2.41 16 23 C 0.10 4.17 4.31 88.07 0.38 4.55 16 24 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.03 1.61 7.71 -2.39 -0.02 1.59 16 26 H 0.04 1.73 6.58 -2.38 -0.02 1.71 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.66 6.92 -2.39 -0.02 1.65 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.05 1.83 7.26 -2.39 -0.02 1.81 16 31 H 0.04 1.09 6.66 -2.39 -0.02 1.08 16 32 H 0.09 2.36 4.46 -2.39 -0.01 2.35 16 33 H 0.04 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.07 2.17 7.77 -2.38 -0.02 2.15 16 35 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.13 2.36 7.54 -2.91 -0.02 2.33 16 40 H 0.00 0.04 7.55 -2.39 -0.02 0.02 16 41 H 0.05 2.15 7.66 -2.39 -0.02 2.13 16 Total: -1.00 -66.81 309.89 2.68 -64.14 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.80 Total: 13.46 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.37 Total: -41.76 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.34 Total: -83.00 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.85 Total: 47.16 kcal Total: -66.81 2.68 -64.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.368 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds