Wall clock time and date at job start Mon Mar 30 2020 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48501 * 109.46731 * 264.79875 * 3 2 1 5 5 H 1.48496 * 109.46975 * 24.79937 * 3 2 1 6 6 H 1.48496 * 109.47152 * 144.79673 * 3 2 1 7 7 C 1.37870 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 4.95470 * 7 2 1 9 9 C 1.50701 * 120.00356 * 184.94602 * 7 2 1 10 10 H 1.08996 * 109.67394 * 335.41260 * 9 7 2 11 11 C 1.50508 * 109.53123 * 95.78674 * 9 7 2 12 12 C 1.54296 * 112.97084 * 212.01640 * 11 9 7 13 13 C 1.54068 * 112.28852 * 318.29827 * 12 11 9 14 14 N 1.44277 * 111.97949 * 318.91668 * 13 12 11 15 15 C 1.46896 * 110.99535 * 219.30766 * 14 13 12 16 16 C 1.50695 * 109.47584 * 302.74878 * 15 14 13 17 17 C 1.38241 * 119.99927 * 274.73413 * 16 15 14 18 18 C 1.38234 * 119.99640 * 179.81014 * 17 16 15 19 19 C 1.38232 * 120.00160 * 0.41687 * 18 17 16 20 20 C 1.38235 * 120.00204 * 359.81731 * 19 18 17 21 21 C 1.38229 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.47801 * 109.46419 * 96.43423 * 14 13 12 23 23 C 1.45860 * 112.91953 * 276.73768 * 22 14 13 24 24 H 0.96993 * 120.00395 * 359.97438 * 1 2 3 25 25 H 1.09008 * 108.80781 * 91.11943 * 11 9 7 26 26 H 1.08999 * 108.71027 * 332.84802 * 11 9 7 27 27 H 1.08998 * 108.91851 * 197.57760 * 12 11 9 28 28 H 1.09004 * 108.91659 * 79.02226 * 12 11 9 29 29 H 1.08994 * 108.98240 * 198.27258 * 13 12 11 30 30 H 1.09006 * 108.90924 * 79.51107 * 13 12 11 31 31 H 1.09007 * 109.47254 * 62.75261 * 15 14 13 32 32 H 1.09005 * 109.47019 * 182.74693 * 15 14 13 33 33 H 1.07993 * 119.99775 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99850 * 180.20894 * 18 17 16 35 35 H 1.08003 * 119.99652 * 179.79086 * 19 18 17 36 36 H 1.07993 * 120.00130 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.00237 * 179.97438 * 21 20 19 38 38 H 1.09003 * 108.79156 * 155.85077 * 22 14 13 39 39 H 1.08998 * 108.79569 * 37.63009 * 22 14 13 40 40 H 1.09003 * 109.05326 * 181.86902 * 23 22 14 41 41 H 1.08996 * 109.05518 * 300.85223 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9829 -1.3943 5 1 1.3959 2.6819 0.5872 6 1 3.4873 1.4745 0.8071 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1276 -0.0798 9 6 3.5073 -1.1964 0.1131 10 1 3.9037 -0.2463 -0.2452 11 6 3.9040 -1.4003 1.5505 12 6 5.2177 -0.6806 1.9206 13 6 6.2870 -0.8135 0.8194 14 7 6.3178 -2.1406 0.2540 15 6 7.6984 -2.5700 -0.0059 16 6 8.3685 -1.5794 -0.9227 17 6 8.2206 -1.6954 -2.2923 18 6 8.8321 -0.7844 -3.1331 19 6 9.5984 0.2375 -2.6049 20 6 9.7503 0.3507 -1.2355 21 6 9.1353 -0.5577 -0.3946 22 6 5.5127 -2.1667 -0.9851 23 6 4.0880 -2.3514 -0.7331 24 1 -0.4850 0.8400 0.0004 25 1 4.0254 -2.4680 1.7335 26 1 3.1057 -1.0239 2.1903 27 1 5.6068 -1.1084 2.8445 28 1 5.0077 0.3765 2.0836 29 1 7.2644 -0.5868 1.2452 30 1 6.0702 -0.0960 0.0280 31 1 8.2460 -2.6221 0.9352 32 1 7.6905 -3.5531 -0.4766 33 1 7.6252 -2.4963 -2.7051 34 1 8.7138 -0.8731 -4.2030 35 1 10.0789 0.9473 -3.2620 36 1 10.3494 1.1489 -0.8229 37 1 9.2543 -0.4695 0.6753 38 1 5.8662 -2.9820 -1.6164 39 1 5.6562 -1.2263 -1.5171 40 1 3.5607 -2.3945 -1.6861 41 1 3.9396 -3.2914 -0.2017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215096846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:11 Heat of formation + Delta-G solvation = 21.794809 kcal Electronic energy + Delta-G solvation = -19952.442168 eV Core-core repulsion = 17217.595686 eV Total energy + Delta-G solvation = -2734.846483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97952 -38.10700 -34.76966 -32.22674 -31.83059 -30.88272 -30.78376 -27.50854 -25.54050 -24.01436 -22.96652 -22.18367 -21.44102 -19.58210 -18.55880 -16.88519 -16.66640 -15.73625 -15.43406 -15.17807 -14.67523 -14.21601 -13.96719 -13.57727 -13.53319 -13.04715 -12.69075 -12.57392 -12.43440 -12.00148 -11.82311 -11.45583 -11.40063 -11.02204 -10.84870 -10.73359 -10.67238 -10.27964 -10.13114 -9.65258 -9.42574 -8.98688 -8.96373 -8.84723 -8.77336 -8.42438 -7.95737 -5.99305 -3.96262 1.28303 1.34274 3.33258 3.41544 3.44792 3.70563 4.33240 4.49923 4.76106 4.78659 4.93176 5.02559 5.23799 5.32468 5.37218 5.43481 5.46476 5.66483 5.70629 5.86739 5.91708 5.96396 5.97268 5.99831 6.24961 6.35966 6.39592 6.43014 6.43445 6.45227 6.56508 6.61074 6.73688 6.94315 6.98964 7.16078 7.28724 7.42182 7.50926 7.53980 7.76183 7.94410 8.64668 9.07468 9.65600 11.14580 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.006092 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.308166 B = 4595.085664 C = 4838.952209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.069 3.931 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.026 0.974 11 C -0.098 4.098 12 C -0.113 4.113 13 C 0.059 3.941 14 N -0.512 5.512 15 C 0.091 3.909 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.111 4.111 22 C 0.062 3.938 23 C -0.109 4.109 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.943 -1.539 -2.356 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.132 4.132 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.544 4.544 8 H 0.089 0.911 9 C 0.002 3.998 10 H 0.044 0.956 11 C -0.137 4.137 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.234 5.234 15 C -0.037 4.037 16 C -0.117 4.117 17 C -0.127 4.127 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.064 4.064 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.536 -1.773 -1.986 19.716 hybrid contribution 0.726 1.683 -0.668 1.951 sum 20.261 -0.090 -2.653 20.434 Atomic orbital electron populations 1.69913 1.06279 1.26706 1.51586 1.25030 0.94603 0.98798 0.94736 0.86929 0.80459 0.83955 0.78632 1.20550 1.21869 1.18555 1.21075 0.89487 0.94329 1.49481 0.91081 1.18918 0.95985 0.93520 0.91401 0.95625 1.21574 0.93469 0.99117 0.99501 1.22050 0.96488 0.99869 0.96742 1.21907 0.98296 0.89001 0.97740 1.62032 1.08177 1.26462 1.26725 1.21415 0.88672 0.96217 0.97385 1.20844 0.97700 0.98106 0.95084 1.21137 0.99154 0.99433 0.93021 1.21152 0.97693 0.95319 0.99719 1.21120 0.99483 0.98434 0.95306 1.21126 1.00081 0.99108 0.93731 1.21100 0.97321 0.95004 0.99589 1.21190 0.95877 0.99615 0.89747 1.20673 0.92332 1.00658 1.01029 0.92883 0.93243 0.92948 0.93346 0.93102 0.92802 0.94438 0.90170 0.90024 0.86058 0.86226 0.86398 0.86331 0.86229 0.92881 0.95043 0.92071 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 22.04 27.00 -169.99 -4.59 17.45 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.28 6.32 56.52 0.36 -5.92 16 7 C -0.51 -14.28 8.53 -34.44 -0.29 -14.57 16 8 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 9 C 0.02 0.49 1.44 -92.22 -0.13 0.35 16 10 H 0.03 0.62 4.29 -51.93 -0.22 0.40 16 11 C -0.10 -2.13 4.97 -27.30 -0.14 -2.26 16 12 C -0.11 -2.08 6.14 -25.49 -0.16 -2.24 16 13 C 0.06 0.98 4.17 -4.67 -0.02 0.96 16 14 N -0.51 -8.07 4.45 -241.00 -1.07 -9.14 16 15 C 0.09 1.14 5.30 -4.98 -0.03 1.11 16 16 C -0.12 -1.44 4.32 -104.62 -0.45 -1.89 16 17 C -0.11 -1.33 8.40 -39.58 -0.33 -1.66 16 18 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 19 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 20 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 21 C -0.11 -1.31 8.49 -39.59 -0.34 -1.65 16 22 C 0.06 1.06 3.62 -6.71 -0.02 1.03 16 23 C -0.11 -2.20 4.91 -29.32 -0.14 -2.35 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.05 1.04 7.38 -51.92 -0.38 0.66 16 26 H 0.05 1.23 7.71 -51.93 -0.40 0.83 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.96 7.65 -51.93 -0.40 0.56 16 29 H 0.05 0.77 5.83 -51.93 -0.30 0.47 16 30 H 0.04 0.70 6.50 -51.93 -0.34 0.36 16 31 H 0.08 0.91 8.02 -51.93 -0.42 0.50 16 32 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.12 1.37 7.11 -52.49 -0.37 1.00 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.26 7.37 -52.48 -0.39 0.87 16 38 H 0.05 0.78 6.76 -51.93 -0.35 0.43 16 39 H 0.03 0.57 6.78 -51.93 -0.35 0.21 16 40 H 0.06 1.27 8.02 -51.93 -0.42 0.85 16 41 H 0.06 1.13 7.58 -51.93 -0.39 0.74 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -30.60 309.41 -10.01 -40.61 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.44 Total: 0.28 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -3.34 Total: -26.51 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.30 Total: -36.49 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.59 Total: 17.45 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.60 -10.01 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.402 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds