Wall clock time and date at job start Mon Mar 30 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48501 * 109.46731 * 264.79875 * 3 2 1 5 5 H 1.48496 * 109.46975 * 24.79937 * 3 2 1 6 6 H 1.48496 * 109.47152 * 144.79673 * 3 2 1 7 7 C 1.37870 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 4.95470 * 7 2 1 9 9 C 1.50701 * 120.00356 * 184.94602 * 7 2 1 10 10 H 1.08996 * 109.67394 * 335.41260 * 9 7 2 11 11 C 1.50508 * 109.53123 * 95.78674 * 9 7 2 12 12 C 1.54296 * 112.97084 * 212.01640 * 11 9 7 13 13 C 1.54068 * 112.28852 * 318.29827 * 12 11 9 14 14 N 1.44277 * 111.97949 * 318.91668 * 13 12 11 15 15 C 1.46896 * 110.99535 * 219.30766 * 14 13 12 16 16 C 1.50695 * 109.47584 * 302.74878 * 15 14 13 17 17 C 1.38241 * 119.99927 * 274.73413 * 16 15 14 18 18 C 1.38234 * 119.99640 * 179.81014 * 17 16 15 19 19 C 1.38232 * 120.00160 * 0.41687 * 18 17 16 20 20 C 1.38235 * 120.00204 * 359.81731 * 19 18 17 21 21 C 1.38229 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.47801 * 109.46419 * 96.43423 * 14 13 12 23 23 C 1.45860 * 112.91953 * 276.73768 * 22 14 13 24 24 H 0.96993 * 120.00395 * 359.97438 * 1 2 3 25 25 H 1.09008 * 108.80781 * 91.11943 * 11 9 7 26 26 H 1.08999 * 108.71027 * 332.84802 * 11 9 7 27 27 H 1.08998 * 108.91851 * 197.57760 * 12 11 9 28 28 H 1.09004 * 108.91659 * 79.02226 * 12 11 9 29 29 H 1.08994 * 108.98240 * 198.27258 * 13 12 11 30 30 H 1.09006 * 108.90924 * 79.51107 * 13 12 11 31 31 H 1.09007 * 109.47254 * 62.75261 * 15 14 13 32 32 H 1.09005 * 109.47019 * 182.74693 * 15 14 13 33 33 H 1.07993 * 119.99775 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99850 * 180.20894 * 18 17 16 35 35 H 1.08003 * 119.99652 * 179.79086 * 19 18 17 36 36 H 1.07993 * 120.00130 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.00237 * 179.97438 * 21 20 19 38 38 H 1.09003 * 108.79156 * 155.85077 * 22 14 13 39 39 H 1.08998 * 108.79569 * 37.63009 * 22 14 13 40 40 H 1.09003 * 109.05326 * 181.86902 * 23 22 14 41 41 H 1.08996 * 109.05518 * 300.85223 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9829 -1.3943 5 1 1.3959 2.6819 0.5872 6 1 3.4873 1.4745 0.8071 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1276 -0.0798 9 6 3.5073 -1.1964 0.1131 10 1 3.9037 -0.2463 -0.2452 11 6 3.9040 -1.4003 1.5505 12 6 5.2177 -0.6806 1.9206 13 6 6.2870 -0.8135 0.8194 14 7 6.3178 -2.1406 0.2540 15 6 7.6984 -2.5700 -0.0059 16 6 8.3685 -1.5794 -0.9227 17 6 8.2206 -1.6954 -2.2923 18 6 8.8321 -0.7844 -3.1331 19 6 9.5984 0.2375 -2.6049 20 6 9.7503 0.3507 -1.2355 21 6 9.1353 -0.5577 -0.3946 22 6 5.5127 -2.1667 -0.9851 23 6 4.0880 -2.3514 -0.7331 24 1 -0.4850 0.8400 0.0004 25 1 4.0254 -2.4680 1.7335 26 1 3.1057 -1.0239 2.1903 27 1 5.6068 -1.1084 2.8445 28 1 5.0077 0.3765 2.0836 29 1 7.2644 -0.5868 1.2452 30 1 6.0702 -0.0960 0.0280 31 1 8.2460 -2.6221 0.9352 32 1 7.6905 -3.5531 -0.4766 33 1 7.6252 -2.4963 -2.7051 34 1 8.7138 -0.8731 -4.2030 35 1 10.0789 0.9473 -3.2620 36 1 10.3494 1.1489 -0.8229 37 1 9.2543 -0.4695 0.6753 38 1 5.8662 -2.9820 -1.6164 39 1 5.6562 -1.2263 -1.5171 40 1 3.5607 -2.3945 -1.6861 41 1 3.9396 -3.2914 -0.2017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215096846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:10 Heat of formation + Delta-G solvation = 4.048195 kcal Electronic energy + Delta-G solvation = -19953.211719 eV Core-core repulsion = 17217.595686 eV Total energy + Delta-G solvation = -2735.616034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03921 -39.29757 -36.31442 -34.15397 -33.31037 -31.99840 -31.74023 -28.98714 -27.10392 -25.28388 -24.52133 -23.26345 -22.41901 -21.00322 -20.18678 -19.00789 -17.53483 -17.04490 -16.58864 -16.25764 -16.07353 -15.73175 -15.36614 -15.10218 -14.59938 -14.37093 -14.08991 -13.94670 -13.69014 -13.62973 -13.17080 -12.91859 -12.75329 -12.43068 -12.38600 -12.06501 -11.85610 -11.77606 -11.68510 -11.56502 -11.17656 -10.86729 -10.69359 -10.60900 -9.78854 -9.71641 -9.16516 -8.26704 -6.27607 0.44454 0.51776 1.31440 1.33214 1.44903 2.35739 2.82765 3.09826 3.17191 3.89085 3.90962 4.00929 4.12316 4.16883 4.27980 4.35061 4.39797 4.48860 4.51565 4.64269 4.73368 4.75651 4.82597 4.83831 4.92883 4.96338 5.03522 5.14904 5.17282 5.20439 5.31377 5.47163 5.53837 5.57854 5.63395 5.67234 5.70344 5.78477 5.94464 6.14025 6.21078 6.31827 6.40858 6.80638 7.37395 8.90854 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.006092 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.308166 B = 4595.085664 C = 4838.952209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.010 3.990 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.241 1.241 7 C -0.509 4.509 8 H 0.029 0.971 9 C 0.021 3.979 10 H 0.022 0.978 11 C -0.093 4.093 12 C -0.110 4.110 13 C 0.066 3.934 14 N -0.520 5.520 15 C 0.094 3.906 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.121 4.121 22 C 0.071 3.929 23 C -0.101 4.101 24 H 0.263 0.737 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.018 0.982 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.047 0.953 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.287 -0.803 -2.237 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.186 4.186 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.164 1.164 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.002 3.998 10 H 0.041 0.959 11 C -0.132 4.132 12 C -0.148 4.148 13 C -0.063 4.063 14 N -0.241 5.241 15 C -0.033 4.033 16 C -0.129 4.129 17 C -0.142 4.142 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.056 4.056 23 C -0.139 4.139 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.910 -1.056 -1.866 23.010 hybrid contribution -0.344 1.351 -0.726 1.571 sum 22.567 0.294 -2.592 22.717 Atomic orbital electron populations 1.70065 1.08175 1.27741 1.53613 1.25877 0.95349 1.02737 0.94647 0.85912 0.79756 0.79123 0.79234 1.19746 1.21665 1.16418 1.21406 0.92231 0.92680 1.48392 0.95298 1.18889 0.92711 0.94746 0.93454 0.95945 1.21391 0.94782 0.99627 0.97365 1.22012 0.95085 0.99123 0.98619 1.21819 0.98858 0.89038 0.96613 1.61918 1.10234 1.25942 1.26045 1.21470 0.86736 0.96621 0.98493 1.20854 0.98460 0.98497 0.95126 1.21309 0.99624 0.99959 0.93342 1.21427 0.97667 0.95354 1.00596 1.21452 0.99142 0.98552 0.95828 1.21444 1.00015 0.99457 0.93869 1.21327 0.97261 0.94913 1.00467 1.20970 0.93756 1.00169 0.90705 1.20542 0.94710 0.99028 0.99613 0.92812 0.93089 0.95749 0.90991 0.93587 0.89977 0.96344 0.88537 0.88981 0.85768 0.84828 0.84433 0.84356 0.84974 0.90356 0.95914 0.93382 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.32 13.96 21.44 0.30 -61.02 16 2 C 0.01 0.58 5.47 84.65 0.46 1.05 16 3 Si 0.94 45.75 27.00 68.60 1.85 47.60 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.24 -10.89 6.32 99.48 0.63 -10.26 16 7 C -0.51 -29.73 8.53 25.60 0.22 -29.51 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 9 C 0.02 0.98 1.44 -11.83 -0.02 0.97 16 10 H 0.02 1.07 4.29 -2.39 -0.01 1.06 16 11 C -0.09 -3.98 4.97 30.23 0.15 -3.83 16 12 C -0.11 -3.77 6.14 31.40 0.19 -3.57 16 13 C 0.07 1.97 4.17 87.15 0.36 2.34 16 14 N -0.52 -14.87 4.45 -916.39 -4.08 -18.95 16 15 C 0.09 2.03 5.30 85.56 0.45 2.48 16 16 C -0.13 -2.80 4.32 -19.87 -0.09 -2.88 16 17 C -0.12 -2.72 8.40 22.27 0.19 -2.54 16 18 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 19 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 20 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 21 C -0.12 -2.45 8.49 22.27 0.19 -2.26 16 22 C 0.07 2.27 3.62 83.94 0.30 2.57 16 23 C -0.10 -4.05 4.91 28.92 0.14 -3.91 16 24 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 25 H 0.05 2.12 7.38 -2.38 -0.02 2.10 16 26 H 0.02 1.14 7.71 -2.39 -0.02 1.12 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.61 7.65 -2.39 -0.02 1.59 16 29 H 0.08 2.02 5.83 -2.39 -0.01 2.00 16 30 H 0.02 0.63 6.50 -2.38 -0.02 0.61 16 31 H 0.10 1.79 8.02 -2.38 -0.02 1.77 16 32 H 0.09 1.80 7.90 -2.38 -0.02 1.78 16 33 H 0.12 2.54 7.11 -2.91 -0.02 2.52 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.13 2.25 7.37 -2.91 -0.02 2.23 16 38 H 0.08 2.11 6.76 -2.39 -0.02 2.09 16 39 H 0.02 0.78 6.78 -2.39 -0.02 0.76 16 40 H 0.05 2.01 8.02 -2.39 -0.02 1.99 16 41 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 Total: -1.00 -67.59 309.41 2.22 -65.37 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.91 Total: 13.05 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.23 Total: -46.05 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.78 Total: -79.97 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.85 Total: 47.60 kcal Total: -67.59 2.22 -65.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.415 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds