Wall clock time and date at job start Mon Mar 30 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99673 * 2 1 4 4 H 1.48504 * 109.47011 * 269.99516 * 3 2 1 5 5 H 1.48499 * 109.47573 * 29.99269 * 3 2 1 6 6 H 1.48502 * 109.47337 * 149.99979 * 3 2 1 7 7 C 1.37877 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00017 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47457 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.50360 * 304.92757 * 10 9 7 12 12 C 1.53126 * 109.49990 * 64.99965 * 10 9 7 13 13 C 1.53116 * 109.15755 * 177.63693 * 12 10 9 14 14 C 1.53037 * 109.28018 * 302.34501 * 13 12 10 15 15 N 1.46843 * 109.52073 * 59.18348 * 14 13 12 16 16 C 1.46900 * 110.99716 * 174.16266 * 15 14 13 17 17 C 1.50700 * 109.47609 * 66.04315 * 16 15 14 18 18 C 1.38235 * 120.00255 * 89.99589 * 17 16 15 19 19 C 1.38234 * 120.00220 * 179.97438 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38238 * 119.99747 * 359.50225 * 20 19 18 22 22 C 1.38234 * 120.00056 * 0.47382 * 21 20 19 23 23 C 1.46847 * 111.19857 * 298.25284 * 15 14 13 24 24 H 0.97001 * 120.00345 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47641 * 59.99955 * 9 7 2 26 26 H 1.09009 * 109.47566 * 300.00432 * 9 7 2 27 27 H 1.09000 * 109.52366 * 57.73536 * 12 10 9 28 28 H 1.09001 * 109.52255 * 297.54396 * 12 10 9 29 29 H 1.09003 * 109.49997 * 182.40066 * 13 12 10 30 30 H 1.09007 * 109.53654 * 62.31082 * 13 12 10 31 31 H 1.08996 * 109.46033 * 299.16549 * 14 13 12 32 32 H 1.09002 * 109.45235 * 179.19388 * 14 13 12 33 33 H 1.09005 * 109.47053 * 306.04072 * 16 15 14 34 34 H 1.09002 * 109.47553 * 186.04107 * 16 15 14 35 35 H 1.07999 * 119.99770 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.08004 * 120.00382 * 180.25932 * 21 20 19 39 39 H 1.08001 * 120.00294 * 179.78846 * 22 21 20 40 40 H 1.08998 * 109.46659 * 181.75923 * 23 15 14 41 41 H 1.08999 * 109.46383 * 301.73202 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 1 3.5881 -3.1758 0.8431 12 6 3.6175 -3.3214 -1.3075 13 6 4.1821 -4.7446 -1.3249 14 6 5.7029 -4.6868 -1.1646 15 7 6.0380 -4.0236 0.1019 16 6 7.4841 -4.0731 0.3555 17 6 8.2045 -3.2504 -0.6815 18 6 8.4446 -1.9082 -0.4545 19 6 9.1058 -1.1537 -1.4055 20 6 9.5217 -1.7401 -2.5861 21 6 9.2855 -3.0834 -2.8114 22 6 8.6247 -3.8380 -1.8601 23 6 5.5472 -2.6398 0.1228 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8753 -0.6802 -0.8888 27 1 4.0185 -2.7602 -2.1515 28 1 2.5304 -3.3598 -1.3779 29 1 3.9338 -5.2230 -2.2724 30 1 3.7511 -5.3178 -0.5040 31 1 6.1344 -4.1259 -1.9936 32 1 6.1064 -5.6994 -1.1622 33 1 7.8272 -5.1063 0.3022 34 1 7.6931 -3.6715 1.3471 35 1 8.1163 -1.4491 0.4663 36 1 9.2937 -0.1051 -1.2278 37 1 10.0345 -1.1497 -3.3311 38 1 9.6142 -3.5427 -3.7320 39 1 8.4371 -4.8867 -2.0375 40 1 5.8376 -2.1655 1.0602 41 1 5.9794 -2.0885 -0.7122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215096952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:06 Heat of formation + Delta-G solvation = 9.854890 kcal Electronic energy + Delta-G solvation = -19603.413682 eV Core-core repulsion = 16868.049445 eV Total energy + Delta-G solvation = -2735.364236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95187 -38.09725 -34.61979 -32.72351 -31.41738 -30.91324 -30.44448 -27.48719 -26.17147 -23.34071 -22.92308 -22.23941 -21.29035 -20.11042 -18.94943 -16.85096 -16.65425 -15.68684 -15.28751 -15.06996 -14.55825 -14.24787 -14.07424 -13.52027 -13.48599 -13.29365 -12.93263 -12.60824 -12.42647 -12.15468 -11.80862 -11.64718 -11.46842 -11.26646 -10.99953 -10.76034 -10.58015 -10.44918 -10.06792 -9.76169 -9.58676 -9.30066 -9.00002 -8.93381 -8.78732 -8.49254 -8.07239 -5.99752 -3.96354 1.28138 1.34701 3.32716 3.40156 3.43935 3.70401 4.25052 4.48877 4.75839 4.78673 4.93663 5.05192 5.17464 5.28708 5.34842 5.39695 5.44305 5.52025 5.63170 5.75047 5.80836 5.86035 5.96184 5.97981 6.06455 6.06739 6.27180 6.31162 6.39112 6.44378 6.47901 6.55594 6.58414 6.88318 6.94523 6.95795 7.08734 7.32130 7.35120 7.37864 7.54609 7.85535 8.60164 9.06225 9.63448 11.13722 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.005823 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.639541 B = 4807.652766 C = 5601.523474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.067 4.067 11 H 0.070 0.930 12 C -0.106 4.106 13 C -0.118 4.118 14 C 0.055 3.945 15 N -0.525 5.525 16 C 0.090 3.910 17 C -0.116 4.116 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.111 4.111 23 C 0.057 3.943 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.008 0.992 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.066 0.934 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 -7.383 -3.433 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.086 4.086 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.156 4.156 14 C -0.072 4.072 15 N -0.247 5.247 16 C -0.038 4.038 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.071 4.071 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.694 -7.541 -3.032 20.384 hybrid contribution 0.785 1.519 -0.788 1.883 sum 19.479 -6.022 -3.821 20.743 Atomic orbital electron populations 1.69913 1.06241 1.26718 1.51602 1.25016 0.94679 0.99013 0.94809 0.86827 0.80416 0.83937 0.78393 1.20473 1.21473 1.19075 1.21125 0.89352 0.94351 1.50076 0.90809 1.19590 0.97263 0.91731 0.95979 1.21054 0.91408 0.98561 0.97607 0.91190 1.21540 1.01782 0.93505 0.97539 1.21646 0.94143 0.98771 1.01043 1.22119 0.97010 0.97858 0.90257 1.62379 1.10649 1.18008 1.33634 1.21291 0.87048 0.98882 0.96547 1.20754 0.98573 0.95296 0.97177 1.21138 0.97996 0.93666 0.99607 1.21166 0.98661 0.99829 0.94217 1.21126 1.00535 0.95155 0.97368 1.21117 0.99509 0.94394 0.99144 1.21051 0.98345 0.99762 0.93785 1.22341 0.97224 0.87236 1.00263 0.92860 0.96724 0.97345 0.93349 0.90613 0.92392 0.91497 0.94778 0.91786 0.90266 0.89991 0.86055 0.86181 0.86371 0.86344 0.86368 0.91541 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.52 8.99 -34.44 -0.31 -14.83 16 8 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 9 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 10 C -0.07 -1.36 2.30 -90.54 -0.21 -1.57 16 11 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 12 C -0.11 -2.02 5.05 -26.61 -0.13 -2.15 16 13 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 14 C 0.06 0.78 4.83 -3.84 -0.02 0.76 16 15 N -0.52 -7.73 4.86 -236.12 -1.15 -8.88 16 16 C 0.09 1.09 5.56 -4.98 -0.03 1.07 16 17 C -0.12 -1.43 4.04 -104.62 -0.42 -1.85 16 18 C -0.11 -1.32 8.02 -39.58 -0.32 -1.64 16 19 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 20 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.11 -1.27 8.12 -39.58 -0.32 -1.59 16 23 C 0.06 0.97 3.82 -3.83 -0.01 0.95 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.60 7.03 -51.93 -0.37 1.24 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 31 H 0.03 0.50 6.55 -51.93 -0.34 0.16 16 32 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 33 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 34 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.12 1.45 8.02 -52.49 -0.42 1.03 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.12 1.18 8.03 -52.49 -0.42 0.75 16 40 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 41 H 0.03 0.61 6.46 -51.93 -0.34 0.27 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -30.65 318.49 -10.40 -41.06 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.84 Total: -0.40 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -3.33 Total: -26.59 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.37 Total: -36.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.65 -10.40 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.911 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds