Wall clock time and date at job start Mon Mar 30 2020 07:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99673 * 2 1 4 4 H 1.48504 * 109.47011 * 269.99516 * 3 2 1 5 5 H 1.48499 * 109.47573 * 29.99269 * 3 2 1 6 6 H 1.48502 * 109.47337 * 149.99979 * 3 2 1 7 7 C 1.37877 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00017 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47457 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.50360 * 304.92757 * 10 9 7 12 12 C 1.53126 * 109.49990 * 64.99965 * 10 9 7 13 13 C 1.53116 * 109.15755 * 177.63693 * 12 10 9 14 14 C 1.53037 * 109.28018 * 302.34501 * 13 12 10 15 15 N 1.46843 * 109.52073 * 59.18348 * 14 13 12 16 16 C 1.46900 * 110.99716 * 174.16266 * 15 14 13 17 17 C 1.50700 * 109.47609 * 66.04315 * 16 15 14 18 18 C 1.38235 * 120.00255 * 89.99589 * 17 16 15 19 19 C 1.38234 * 120.00220 * 179.97438 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38238 * 119.99747 * 359.50225 * 20 19 18 22 22 C 1.38234 * 120.00056 * 0.47382 * 21 20 19 23 23 C 1.46847 * 111.19857 * 298.25284 * 15 14 13 24 24 H 0.97001 * 120.00345 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47641 * 59.99955 * 9 7 2 26 26 H 1.09009 * 109.47566 * 300.00432 * 9 7 2 27 27 H 1.09000 * 109.52366 * 57.73536 * 12 10 9 28 28 H 1.09001 * 109.52255 * 297.54396 * 12 10 9 29 29 H 1.09003 * 109.49997 * 182.40066 * 13 12 10 30 30 H 1.09007 * 109.53654 * 62.31082 * 13 12 10 31 31 H 1.08996 * 109.46033 * 299.16549 * 14 13 12 32 32 H 1.09002 * 109.45235 * 179.19388 * 14 13 12 33 33 H 1.09005 * 109.47053 * 306.04072 * 16 15 14 34 34 H 1.09002 * 109.47553 * 186.04107 * 16 15 14 35 35 H 1.07999 * 119.99770 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.08004 * 120.00382 * 180.25932 * 21 20 19 39 39 H 1.08001 * 120.00294 * 179.78846 * 22 21 20 40 40 H 1.08998 * 109.46659 * 181.75923 * 23 15 14 41 41 H 1.08999 * 109.46383 * 301.73202 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 1 3.5881 -3.1758 0.8431 12 6 3.6175 -3.3214 -1.3075 13 6 4.1821 -4.7446 -1.3249 14 6 5.7029 -4.6868 -1.1646 15 7 6.0380 -4.0236 0.1019 16 6 7.4841 -4.0731 0.3555 17 6 8.2045 -3.2504 -0.6815 18 6 8.4446 -1.9082 -0.4545 19 6 9.1058 -1.1537 -1.4055 20 6 9.5217 -1.7401 -2.5861 21 6 9.2855 -3.0834 -2.8114 22 6 8.6247 -3.8380 -1.8601 23 6 5.5472 -2.6398 0.1228 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8753 -0.6802 -0.8888 27 1 4.0185 -2.7602 -2.1515 28 1 2.5304 -3.3598 -1.3779 29 1 3.9338 -5.2230 -2.2724 30 1 3.7511 -5.3178 -0.5040 31 1 6.1344 -4.1259 -1.9936 32 1 6.1064 -5.6994 -1.1622 33 1 7.8272 -5.1063 0.3022 34 1 7.6931 -3.6715 1.3471 35 1 8.1163 -1.4491 0.4663 36 1 9.2937 -0.1051 -1.2278 37 1 10.0345 -1.1497 -3.3311 38 1 9.6142 -3.5427 -3.7320 39 1 8.4371 -4.8867 -2.0375 40 1 5.8376 -2.1655 1.0602 41 1 5.9794 -2.0885 -0.7122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215096952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:05 Heat of formation + Delta-G solvation = -7.658821 kcal Electronic energy + Delta-G solvation = -19604.173133 eV Core-core repulsion = 16868.049445 eV Total energy + Delta-G solvation = -2736.123688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97134 -39.24018 -36.12293 -34.52175 -33.00366 -31.82262 -31.47928 -29.28678 -27.26259 -25.00955 -24.07061 -23.30810 -22.38921 -21.51804 -20.42728 -18.90830 -17.62817 -16.79907 -16.43671 -16.18648 -16.07462 -15.59686 -15.32036 -14.95356 -14.76248 -14.68674 -14.29012 -13.96914 -13.66662 -13.45522 -13.25582 -13.17639 -12.67046 -12.54028 -12.24170 -12.14719 -11.96055 -11.77737 -11.72038 -11.70799 -11.32426 -10.92481 -10.90087 -10.73703 -9.78715 -9.67302 -9.21252 -8.27194 -6.29300 0.43444 0.50835 1.33396 1.35093 1.47041 2.36064 2.82254 3.07715 3.15004 3.87785 3.90836 3.99380 4.10547 4.13123 4.17281 4.26641 4.28609 4.46486 4.60327 4.63274 4.66517 4.76322 4.78287 4.80891 4.91456 4.94829 4.99107 5.07332 5.13819 5.15920 5.21823 5.31865 5.42434 5.54234 5.56517 5.62631 5.66186 5.70456 5.73047 6.13140 6.15042 6.23620 6.34905 6.77734 7.34100 8.89597 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.005823 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.639541 B = 4807.652766 C = 5601.523474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.035 0.965 9 C -0.003 4.003 10 C -0.065 4.065 11 H 0.051 0.949 12 C -0.103 4.103 13 C -0.112 4.112 14 C 0.060 3.940 15 N -0.532 5.532 16 C 0.093 3.907 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.117 4.117 23 C 0.073 3.927 24 H 0.265 0.735 25 H 0.016 0.984 26 H 0.010 0.990 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.069 0.931 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.958 -7.636 -4.128 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.192 4.192 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.555 4.555 8 H 0.053 0.947 9 C -0.041 4.041 10 C -0.084 4.084 11 H 0.070 0.930 12 C -0.141 4.141 13 C -0.150 4.150 14 C -0.068 4.068 15 N -0.254 5.254 16 C -0.034 4.034 17 C -0.129 4.129 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.055 4.055 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.087 0.913 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 21.562 -7.813 -3.725 23.234 hybrid contribution -0.141 1.524 -0.592 1.641 sum 21.421 -6.288 -4.317 22.738 Atomic orbital electron populations 1.70066 1.08172 1.27929 1.53201 1.25958 0.95549 1.03240 0.94501 0.85739 0.79616 0.78786 0.79018 1.19497 1.20902 1.17144 1.21408 0.91756 0.92971 1.49349 0.94694 1.19517 0.94224 0.94519 0.95840 1.20931 0.94028 0.95909 0.97540 0.93011 1.21450 0.99745 0.96186 0.96709 1.21596 0.95426 0.95900 1.02041 1.22125 0.95477 0.99335 0.89833 1.62327 1.12723 1.16178 1.34161 1.21341 0.85096 1.00236 0.96763 1.20790 0.99214 0.95232 0.97660 1.21280 0.98798 0.94201 0.99982 1.21410 0.98755 1.00556 0.94520 1.21450 1.00245 0.95660 0.97490 1.21455 0.98959 0.94435 0.99877 1.21301 0.98089 1.00693 0.93474 1.22023 0.94270 0.89027 1.00206 0.92647 0.96547 0.97160 0.93731 0.94066 0.90388 0.91907 0.94932 0.88823 0.88156 0.89669 0.86314 0.85113 0.84415 0.84149 0.84754 0.91295 0.95217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.89 13.96 21.45 0.30 -60.60 16 2 C 0.00 0.22 5.47 84.65 0.46 0.69 16 3 Si 0.94 45.42 27.47 68.60 1.88 47.31 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.52 -30.37 8.99 25.60 0.23 -30.14 16 8 H 0.03 2.26 7.30 -2.91 -0.02 2.24 16 9 C 0.00 -0.15 3.52 29.85 0.11 -0.05 16 10 C -0.07 -2.66 2.30 -10.74 -0.02 -2.68 16 11 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 12 C -0.10 -3.97 5.05 30.68 0.15 -3.82 16 13 C -0.11 -3.29 6.09 30.65 0.19 -3.11 16 14 C 0.06 1.51 4.83 86.33 0.42 1.92 16 15 N -0.53 -14.50 4.86 -900.94 -4.38 -18.88 16 16 C 0.09 2.00 5.56 85.56 0.48 2.47 16 17 C -0.13 -2.82 4.04 -19.87 -0.08 -2.90 16 18 C -0.12 -2.90 8.02 22.27 0.18 -2.72 16 19 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 20 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 21 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 22 C -0.12 -2.32 8.12 22.27 0.18 -2.14 16 23 C 0.07 2.39 3.82 86.33 0.33 2.72 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 26 H 0.01 0.49 7.57 -2.38 -0.02 0.47 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.83 7.03 -2.39 -0.02 1.81 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.03 0.85 6.55 -2.39 -0.02 0.84 16 32 H 0.09 1.86 8.06 -2.39 -0.02 1.84 16 33 H 0.10 1.75 8.01 -2.38 -0.02 1.73 16 34 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 35 H 0.12 2.72 8.02 -2.91 -0.02 2.70 16 36 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.13 2.15 8.03 -2.91 -0.02 2.13 16 40 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 41 H 0.03 1.01 6.46 -2.39 -0.02 1.00 16 Total: -1.00 -67.41 318.49 2.01 -65.40 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.92 Total: 13.69 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 3.29 Total: -46.92 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -4.08 Total: -79.48 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -67.41 2.01 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.743 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds