Wall clock time and date at job start Mon Mar 30 2020 07:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00031 * 2 1 4 4 H 1.48505 * 109.46799 * 239.99987 * 3 2 1 5 5 H 1.48493 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47356 * 119.99585 * 3 2 1 7 7 C 1.37880 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46861 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.50270 * 55.00225 * 10 9 7 12 12 C 1.53114 * 109.50418 * 294.92284 * 10 9 7 13 13 C 1.53126 * 109.16239 * 182.36855 * 12 10 9 14 14 C 1.53037 * 109.27880 * 57.65311 * 13 12 10 15 15 N 1.46850 * 109.52028 * 300.82273 * 14 13 12 16 16 C 1.46900 * 110.99740 * 185.83738 * 15 14 13 17 17 C 1.50703 * 109.47282 * 293.95570 * 16 15 14 18 18 C 1.38235 * 119.99971 * 269.72707 * 17 16 15 19 19 C 1.38237 * 119.99749 * 179.77028 * 18 17 16 20 20 C 1.38234 * 119.99717 * 0.50072 * 19 18 17 21 21 C 1.38228 * 120.00542 * 359.75325 * 20 19 18 22 22 C 1.38231 * 119.99778 * 90.00222 * 17 16 15 23 23 C 1.46929 * 111.22205 * 61.74456 * 15 14 13 24 24 H 0.96994 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47034 * 60.00097 * 9 7 2 26 26 H 1.08997 * 109.47347 * 300.00044 * 9 7 2 27 27 H 1.09006 * 109.52545 * 302.27190 * 12 10 9 28 28 H 1.09002 * 109.52724 * 62.45938 * 12 10 9 29 29 H 1.08997 * 109.50509 * 177.59319 * 13 12 10 30 30 H 1.08997 * 109.49757 * 297.67568 * 13 12 10 31 31 H 1.08997 * 109.46525 * 60.83781 * 14 13 12 32 32 H 1.08995 * 109.46235 * 180.81317 * 14 13 12 33 33 H 1.09004 * 109.46832 * 53.95757 * 16 15 14 34 34 H 1.08997 * 109.47223 * 173.95226 * 16 15 14 35 35 H 1.08002 * 119.99905 * 359.97438 * 18 17 16 36 36 H 1.07996 * 119.99737 * 180.23063 * 19 18 17 37 37 H 1.08007 * 119.99572 * 179.72784 * 20 19 18 38 38 H 1.07999 * 120.00544 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00343 * 359.97438 * 22 17 16 40 40 H 1.08994 * 109.51866 * 178.25481 * 23 15 14 41 41 H 1.09007 * 109.45009 * 58.26164 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9297 -3.5557 0.8422 12 6 3.0398 -3.6554 -1.3083 13 6 3.9901 -4.8559 -1.3256 14 6 3.1799 -6.1441 -1.1640 15 7 2.4387 -6.1019 0.1030 16 6 1.7586 -7.3788 0.3579 17 6 0.6854 -7.5920 -0.6784 18 6 -0.5983 -7.1337 -0.4484 19 6 -1.5816 -7.3252 -1.4010 20 6 -1.2835 -7.9840 -2.5792 21 6 -0.0011 -8.4469 -2.8069 22 6 0.9834 -8.2509 -1.8565 23 6 1.4849 -4.9844 0.1243 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8902 27 1 2.3527 -3.7226 -2.1519 28 1 3.6165 -2.7332 -1.3798 29 1 4.5279 -4.8808 -2.2734 30 1 4.7023 -4.7680 -0.5052 31 1 2.4778 -6.2380 -1.9925 32 1 3.8549 -6.9998 -1.1614 33 1 2.4819 -8.1926 0.3047 34 1 1.3071 -7.3584 1.3497 35 1 -0.8322 -6.6232 0.4741 36 1 -2.5836 -6.9638 -1.2229 37 1 -2.0528 -8.1374 -3.3216 38 1 0.2317 -8.9620 -3.7272 39 1 1.9854 -8.6126 -2.0345 40 1 0.9294 -4.9976 1.0619 41 1 0.7908 -5.0837 -0.7103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215096993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:08 Heat of formation + Delta-G solvation = 6.252170 kcal Electronic energy + Delta-G solvation = -19535.343153 eV Core-core repulsion = 16799.822691 eV Total energy + Delta-G solvation = -2735.520462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86301 -38.00249 -34.51791 -32.74503 -31.24978 -30.78262 -30.36739 -26.98876 -26.05488 -23.47752 -22.83868 -22.24518 -21.24486 -20.20637 -18.85998 -16.72666 -16.24278 -15.62231 -15.19276 -15.03382 -14.45829 -14.33787 -14.04105 -13.51672 -13.41991 -13.20004 -12.80802 -12.41215 -12.13073 -12.10500 -11.73780 -11.48468 -11.25902 -11.11420 -10.92022 -10.70648 -10.63382 -10.40736 -10.16038 -9.92729 -9.52420 -9.05179 -8.93122 -8.84617 -8.69810 -8.29727 -7.99382 -5.94905 -3.95987 1.36241 1.42957 3.36240 3.40488 3.43060 3.78600 4.32255 4.51044 4.83325 4.86743 5.01639 5.13008 5.24694 5.36069 5.41020 5.45852 5.52293 5.58468 5.70759 5.82903 5.88383 5.95867 6.03813 6.06302 6.13321 6.15521 6.35550 6.40671 6.46842 6.52879 6.57021 6.64454 6.66938 7.02791 7.04417 7.13118 7.17432 7.42149 7.49938 7.72797 7.89145 8.05581 8.49513 9.10145 9.67233 11.16632 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.005067 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.403853 B = 5524.194049 C = 6104.301914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.076 4.076 11 H 0.063 0.937 12 C -0.105 4.105 13 C -0.118 4.118 14 C 0.056 3.944 15 N -0.526 5.526 16 C 0.090 3.910 17 C -0.116 4.116 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.112 4.112 23 C 0.059 3.941 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -17.331 -3.395 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.095 4.095 11 H 0.082 0.918 12 C -0.142 4.142 13 C -0.156 4.156 14 C -0.072 4.072 15 N -0.248 5.248 16 C -0.038 4.038 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.131 4.131 23 C -0.068 4.068 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.445 -17.121 -2.998 17.441 hybrid contribution -0.289 0.874 -0.771 1.200 sum 1.156 -16.247 -3.769 16.718 Atomic orbital electron populations 1.69954 1.06036 1.26544 1.51168 1.25010 0.94795 0.99117 0.95543 0.86702 0.79605 0.83379 0.78584 1.20323 1.21396 1.20267 1.21195 0.92940 0.90875 1.50042 0.92643 1.19090 0.93634 0.91139 0.96973 1.21245 0.98030 0.93360 0.96846 0.91840 1.21532 0.97639 0.97020 0.98041 1.21653 0.98347 0.94824 1.00800 1.22098 0.96447 0.98236 0.90409 1.62429 1.26734 1.02226 1.33430 1.21282 0.93124 0.92773 0.96576 1.20746 0.95787 0.98107 0.97168 1.21150 0.92624 0.98841 0.99625 1.21175 0.99486 0.98896 0.94170 1.21121 0.96725 0.98939 0.97425 1.21102 0.93476 1.00583 0.99101 1.21034 0.98987 0.99178 0.93857 1.22331 0.93518 0.90605 1.00329 0.93075 0.96832 0.96709 0.93284 0.91164 0.92565 0.91659 0.94780 0.91920 0.90403 0.90016 0.85975 0.86103 0.86392 0.86414 0.86463 0.91545 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.44 8.44 -34.44 -0.29 -14.73 16 8 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 9 C 0.03 0.76 4.45 -27.88 -0.12 0.63 16 10 C -0.08 -1.60 2.30 -90.54 -0.21 -1.81 16 11 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.10 -2.03 5.05 -26.61 -0.13 -2.16 16 13 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 14 C 0.06 0.81 4.83 -3.83 -0.02 0.80 16 15 N -0.53 -8.12 4.86 -236.04 -1.15 -9.26 16 16 C 0.09 1.16 5.56 -4.97 -0.03 1.13 16 17 C -0.12 -1.52 4.03 -104.62 -0.42 -1.94 16 18 C -0.10 -1.39 8.03 -39.58 -0.32 -1.71 16 19 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 20 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.11 -1.35 8.12 -39.58 -0.32 -1.67 16 23 C 0.06 1.07 3.84 -3.79 -0.01 1.06 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.45 7.04 -51.93 -0.37 1.09 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.52 6.55 -51.93 -0.34 0.18 16 32 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 34 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.12 1.59 8.03 -52.49 -0.42 1.16 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.23 8.03 -52.49 -0.42 0.81 16 40 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 41 H 0.03 0.66 6.48 -51.92 -0.34 0.33 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -30.22 322.15 -10.78 -41.00 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.87 Total: -0.53 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -3.33 Total: -26.46 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.41 Total: -35.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.22 -10.78 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.256 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds