Wall clock time and date at job start Mon Mar 30 2020 07:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00031 * 2 1 4 4 H 1.48505 * 109.46799 * 239.99987 * 3 2 1 5 5 H 1.48493 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47356 * 119.99585 * 3 2 1 7 7 C 1.37880 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46861 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.50270 * 55.00225 * 10 9 7 12 12 C 1.53114 * 109.50418 * 294.92284 * 10 9 7 13 13 C 1.53126 * 109.16239 * 182.36855 * 12 10 9 14 14 C 1.53037 * 109.27880 * 57.65311 * 13 12 10 15 15 N 1.46850 * 109.52028 * 300.82273 * 14 13 12 16 16 C 1.46900 * 110.99740 * 185.83738 * 15 14 13 17 17 C 1.50703 * 109.47282 * 293.95570 * 16 15 14 18 18 C 1.38235 * 119.99971 * 269.72707 * 17 16 15 19 19 C 1.38237 * 119.99749 * 179.77028 * 18 17 16 20 20 C 1.38234 * 119.99717 * 0.50072 * 19 18 17 21 21 C 1.38228 * 120.00542 * 359.75325 * 20 19 18 22 22 C 1.38231 * 119.99778 * 90.00222 * 17 16 15 23 23 C 1.46929 * 111.22205 * 61.74456 * 15 14 13 24 24 H 0.96994 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47034 * 60.00097 * 9 7 2 26 26 H 1.08997 * 109.47347 * 300.00044 * 9 7 2 27 27 H 1.09006 * 109.52545 * 302.27190 * 12 10 9 28 28 H 1.09002 * 109.52724 * 62.45938 * 12 10 9 29 29 H 1.08997 * 109.50509 * 177.59319 * 13 12 10 30 30 H 1.08997 * 109.49757 * 297.67568 * 13 12 10 31 31 H 1.08997 * 109.46525 * 60.83781 * 14 13 12 32 32 H 1.08995 * 109.46235 * 180.81317 * 14 13 12 33 33 H 1.09004 * 109.46832 * 53.95757 * 16 15 14 34 34 H 1.08997 * 109.47223 * 173.95226 * 16 15 14 35 35 H 1.08002 * 119.99905 * 359.97438 * 18 17 16 36 36 H 1.07996 * 119.99737 * 180.23063 * 19 18 17 37 37 H 1.08007 * 119.99572 * 179.72784 * 20 19 18 38 38 H 1.07999 * 120.00544 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00343 * 359.97438 * 22 17 16 40 40 H 1.08994 * 109.51866 * 178.25481 * 23 15 14 41 41 H 1.09007 * 109.45009 * 58.26164 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9297 -3.5557 0.8422 12 6 3.0398 -3.6554 -1.3083 13 6 3.9901 -4.8559 -1.3256 14 6 3.1799 -6.1441 -1.1640 15 7 2.4387 -6.1019 0.1030 16 6 1.7586 -7.3788 0.3579 17 6 0.6854 -7.5920 -0.6784 18 6 -0.5983 -7.1337 -0.4484 19 6 -1.5816 -7.3252 -1.4010 20 6 -1.2835 -7.9840 -2.5792 21 6 -0.0011 -8.4469 -2.8069 22 6 0.9834 -8.2509 -1.8565 23 6 1.4849 -4.9844 0.1243 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8902 27 1 2.3527 -3.7226 -2.1519 28 1 3.6165 -2.7332 -1.3798 29 1 4.5279 -4.8808 -2.2734 30 1 4.7023 -4.7680 -0.5052 31 1 2.4778 -6.2380 -1.9925 32 1 3.8549 -6.9998 -1.1614 33 1 2.4819 -8.1926 0.3047 34 1 1.3071 -7.3584 1.3497 35 1 -0.8322 -6.6232 0.4741 36 1 -2.5836 -6.9638 -1.2229 37 1 -2.0528 -8.1374 -3.3216 38 1 0.2317 -8.9620 -3.7272 39 1 1.9854 -8.6126 -2.0345 40 1 0.9294 -4.9976 1.0619 41 1 0.7908 -5.0837 -0.7103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215096993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:08 Heat of formation + Delta-G solvation = -10.270266 kcal Electronic energy + Delta-G solvation = -19536.059620 eV Core-core repulsion = 16799.822691 eV Total energy + Delta-G solvation = -2736.236929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96194 -39.22460 -36.11040 -34.52992 -32.80491 -31.81287 -31.48316 -28.85855 -27.24563 -25.30614 -24.04901 -23.37916 -22.42892 -21.60815 -20.38997 -18.47174 -17.63009 -16.85373 -16.46161 -16.26278 -16.05461 -15.60421 -15.31866 -14.93607 -14.78254 -14.30521 -14.16772 -13.95115 -13.64569 -13.40100 -13.21735 -13.05172 -12.69716 -12.54128 -12.41505 -12.15404 -12.03868 -11.88613 -11.74236 -11.60554 -11.29276 -10.89529 -10.80169 -10.52057 -9.79895 -9.68203 -9.22722 -8.17671 -6.27286 0.42424 0.49546 1.39535 1.42648 1.50277 2.41716 2.81660 3.14761 3.15570 3.88132 3.90375 4.01613 4.12008 4.13355 4.18088 4.27114 4.28919 4.48456 4.61090 4.62535 4.68957 4.76748 4.79823 4.83614 4.92250 4.99384 5.05701 5.12599 5.15151 5.17138 5.31336 5.41007 5.48465 5.55114 5.57173 5.61294 5.66710 5.79204 5.88345 6.12093 6.12272 6.24113 6.31583 6.87995 7.41014 8.94398 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.005067 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.403853 B = 5524.194049 C = 6104.301914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.037 3.963 10 C -0.069 4.069 11 H 0.055 0.945 12 C -0.101 4.101 13 C -0.111 4.111 14 C 0.057 3.943 15 N -0.529 5.529 16 C 0.092 3.908 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.136 4.136 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.116 4.116 23 C 0.076 3.924 24 H 0.262 0.738 25 H -0.016 1.016 26 H -0.014 1.014 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.059 0.941 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -18.612 -4.312 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.088 4.088 11 H 0.073 0.927 12 C -0.139 4.139 13 C -0.148 4.148 14 C -0.070 4.070 15 N -0.251 5.251 16 C -0.035 4.035 17 C -0.129 4.129 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.052 4.052 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.077 0.923 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.344 -18.423 -3.913 19.129 hybrid contribution -0.938 1.236 -0.498 1.630 sum 2.406 -17.187 -4.412 17.906 Atomic orbital electron populations 1.70099 1.07828 1.27641 1.52109 1.25958 0.95693 1.03233 0.94980 0.85555 0.78312 0.78345 0.79190 1.19190 1.20962 1.19167 1.21579 0.93374 0.91952 1.49779 0.92126 1.18953 0.93927 0.93149 0.94055 1.21055 0.96959 0.93106 0.97674 0.92665 1.21441 0.97753 0.98430 0.96233 1.21604 0.97563 0.93357 1.02308 1.22161 0.96526 0.98704 0.89619 1.62385 1.26134 1.02422 1.34182 1.21350 0.93648 0.91899 0.96612 1.20798 0.95499 0.98768 0.97850 1.21264 0.93607 0.99712 0.99871 1.21405 0.99864 0.99451 0.94697 1.21452 0.97727 0.98272 0.97363 1.21475 0.93133 1.00099 0.99922 1.21313 1.00157 0.98643 0.93344 1.21972 0.93313 0.90499 0.99415 0.92932 0.99813 0.99589 0.94604 0.92973 0.90095 0.91372 0.95319 0.88551 0.87792 0.90003 0.86869 0.85383 0.84283 0.83824 0.84418 0.92259 0.96096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -30.60 8.44 25.60 0.22 -30.39 16 8 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 9 C 0.04 2.01 4.45 29.85 0.13 2.14 16 10 C -0.07 -2.98 2.30 -10.74 -0.02 -3.01 16 11 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.10 -3.92 5.05 30.67 0.16 -3.76 16 13 C -0.11 -3.21 6.09 30.65 0.19 -3.03 16 14 C 0.06 1.51 4.83 86.33 0.42 1.92 16 15 N -0.53 -15.51 4.86 -900.70 -4.38 -19.89 16 16 C 0.09 2.19 5.56 85.56 0.48 2.66 16 17 C -0.13 -3.17 4.03 -19.87 -0.08 -3.25 16 18 C -0.13 -3.42 8.03 22.27 0.18 -3.24 16 19 C -0.14 -3.41 10.05 22.27 0.22 -3.19 16 20 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 21 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 22 C -0.12 -2.51 8.12 22.27 0.18 -2.33 16 23 C 0.08 2.80 3.84 86.31 0.33 3.13 16 24 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.05 2.17 7.04 -2.39 -0.02 2.16 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.03 0.80 6.55 -2.39 -0.02 0.79 16 32 H 0.10 1.95 8.06 -2.39 -0.02 1.94 16 33 H 0.10 1.95 8.01 -2.39 -0.02 1.93 16 34 H 0.08 1.92 8.08 -2.39 -0.02 1.91 16 35 H 0.11 3.13 8.03 -2.91 -0.02 3.11 16 36 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.14 2.36 8.03 -2.91 -0.02 2.34 16 40 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 41 H 0.02 0.83 6.48 -2.38 -0.02 0.81 16 Total: -1.00 -66.61 322.15 2.21 -64.40 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.97 Total: 13.36 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 3.30 Total: -46.99 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -4.09 Total: -77.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.61 2.21 -64.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215096993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.129 kcal (2) G-P(sol) polarization free energy of solvation -66.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds