Wall clock time and date at job start Mon Mar 30 2020 07:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 112.84791 * 2 1 4 4 N 1.46902 * 109.47245 * 48.80819 * 3 2 1 5 5 C 1.46898 * 110.99733 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47128 * 324.99637 * 5 4 3 7 7 C 1.50703 * 109.47283 * 84.99522 * 5 4 3 8 8 H 1.08003 * 119.99457 * 58.74243 * 7 5 4 9 9 C 1.37875 * 120.00264 * 238.73871 * 7 5 4 10 10 N 1.31516 * 119.99992 * 187.31611 * 9 7 5 11 11 Si 1.86798 * 119.99968 * 7.31666 * 9 7 5 12 12 H 1.48499 * 109.47120 * 275.09376 * 11 9 7 13 13 H 1.48503 * 109.47265 * 35.08775 * 11 9 7 14 14 H 1.48492 * 109.47274 * 155.08863 * 11 9 7 15 15 C 1.50698 * 109.47098 * 204.99583 * 5 4 3 16 16 C 1.38233 * 120.00154 * 313.49161 * 15 5 4 17 17 C 1.38236 * 120.00553 * 179.80991 * 16 15 5 18 18 C 1.38241 * 119.99260 * 0.39341 * 17 16 15 19 19 C 1.38232 * 120.00311 * 359.85754 * 18 17 16 20 20 C 1.38233 * 119.99778 * 359.95572 * 19 18 17 21 21 C 1.53786 * 113.68719 * 131.27018 * 2 1 3 22 22 C 1.53784 * 87.08055 * 89.12705 * 21 2 1 23 23 C 1.53777 * 87.08227 * 25.42988 * 22 21 2 24 24 H 1.08995 * 109.46742 * 69.66615 * 1 2 3 25 25 H 1.08997 * 109.47097 * 189.67115 * 1 2 3 26 26 H 1.08999 * 109.46805 * 309.66303 * 1 2 3 27 27 H 1.09000 * 109.47130 * 288.80248 * 3 2 1 28 28 H 1.09005 * 109.46717 * 168.80764 * 3 2 1 29 29 H 1.00897 * 111.00058 * 56.04667 * 4 3 2 30 30 H 0.97003 * 119.99877 * 180.02562 * 10 9 7 31 31 H 1.08007 * 119.99961 * 359.97438 * 16 15 5 32 32 H 1.07992 * 120.00658 * 180.23288 * 17 16 15 33 33 H 1.08003 * 119.99618 * 179.83902 * 18 17 16 34 34 H 1.08001 * 119.99991 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.99822 * 179.97438 * 20 19 18 36 36 H 1.09001 * 113.61060 * 203.67508 * 21 2 1 37 37 H 1.08997 * 113.61597 * 334.57608 * 21 2 1 38 38 H 1.09000 * 113.60705 * 270.88157 * 22 21 2 39 39 H 1.08999 * 113.61147 * 139.98207 * 22 21 2 40 40 H 1.08999 * 113.61655 * 220.02152 * 23 22 21 41 41 H 1.09000 * 113.61602 * 89.11724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4737 2.2154 1.0422 5 6 2.0206 3.5784 1.0720 6 1 3.0841 3.5485 0.8346 7 6 1.3030 4.4300 0.0567 8 1 0.2325 4.5589 0.1200 9 6 2.0128 5.0445 -0.9529 10 7 1.4134 5.9005 -1.7514 11 14 3.8261 4.6613 -1.1867 12 1 4.6341 5.5219 -0.2858 13 1 4.0761 3.2337 -0.8629 14 1 4.2096 4.9235 -2.5971 15 6 1.8291 4.1666 2.4462 16 6 0.6068 4.0542 3.0820 17 6 0.4322 4.5902 4.3441 18 6 1.4777 5.2458 4.9672 19 6 2.6985 5.3627 4.3294 20 6 2.8741 4.8232 3.0688 21 6 2.1479 -0.9289 1.0585 22 6 2.0950 -2.0420 -0.0013 23 6 2.1461 -0.9281 -1.0602 24 1 -0.3632 0.3571 -0.9636 25 1 -0.3633 -1.0130 0.1726 26 1 -0.3633 0.6559 0.7911 27 1 1.9600 1.8734 -0.9728 28 1 3.1943 1.3532 0.1995 29 1 1.5564 1.7731 1.9453 30 1 1.9127 6.3326 -2.4620 31 1 -0.2112 3.5453 2.5936 32 1 -0.5216 4.4992 4.8423 33 1 1.3405 5.6669 5.9523 34 1 3.5151 5.8752 4.8161 35 1 3.8278 4.9149 2.5703 36 1 3.1609 -0.6488 1.3473 37 1 1.4973 -1.1094 1.9142 38 1 1.1594 -2.6013 -0.0006 39 1 2.9744 -2.6861 -0.0023 40 1 1.4940 -1.1079 -1.9149 41 1 3.1586 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233016582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:18 Heat of formation + Delta-G solvation = 37.422942 kcal Electronic energy + Delta-G solvation = -19617.953300 eV Core-core repulsion = 16883.784504 eV Total energy + Delta-G solvation = -2734.168796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.36164 -38.56258 -35.26308 -32.29180 -30.91666 -30.21620 -28.74168 -26.87700 -25.57927 -25.04484 -22.66876 -21.97738 -21.18567 -19.74283 -17.90950 -16.95610 -16.35823 -15.35645 -14.81218 -14.68073 -14.45541 -14.10073 -13.95529 -13.45743 -12.90776 -12.70598 -12.57237 -12.48572 -12.21798 -12.02340 -11.76387 -11.61050 -11.29220 -11.01037 -10.92251 -10.81846 -10.42699 -10.24662 -10.14380 -9.90419 -9.64797 -9.56655 -9.50160 -8.62645 -8.25775 -7.92408 -7.27852 -6.14003 -4.10324 2.05928 2.10399 3.20912 3.28259 3.30377 4.33329 4.47160 4.77130 4.87187 4.93806 5.05243 5.17005 5.37578 5.49912 5.56290 5.64152 5.70718 5.80117 5.87305 5.92459 5.96982 6.05419 6.12475 6.19098 6.23509 6.27739 6.29229 6.42921 6.45834 6.51722 6.65430 6.70302 6.78705 6.85022 6.94659 7.10607 7.16480 7.43584 7.53057 7.73322 8.01668 8.33853 8.66295 8.99399 9.48821 10.98867 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.008174 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.443502 B = 3424.645576 C = 4628.313686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C 0.083 3.917 4 N -0.671 5.671 5 C 0.213 3.787 6 H 0.016 0.984 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.891 5.891 11 Si 0.866 3.134 12 H -0.277 1.277 13 H -0.264 1.264 14 H -0.288 1.288 15 C -0.042 4.042 16 C -0.100 4.100 17 C -0.127 4.127 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.135 4.135 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.013 0.987 29 H 0.311 0.689 30 H 0.265 0.735 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -10.371 7.456 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.046 4.046 4 N -0.301 5.301 5 C 0.106 3.894 6 H 0.033 0.967 7 C -0.515 4.515 8 H 0.099 0.901 9 C -0.130 4.130 10 N -0.528 5.528 11 Si 0.694 3.306 12 H -0.203 1.203 13 H -0.189 1.189 14 H -0.214 1.214 15 C -0.043 4.043 16 C -0.118 4.118 17 C -0.145 4.145 18 C -0.165 4.165 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.173 4.173 22 C -0.177 4.177 23 C -0.173 4.173 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.031 0.969 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.424 -10.062 6.871 12.267 hybrid contribution 1.988 -0.048 0.068 1.989 sum 3.412 -10.110 6.939 12.728 Atomic orbital electron populations 1.21407 0.92520 1.00121 1.03098 1.21876 0.96445 0.93814 0.95591 1.21785 0.93552 0.91301 0.98006 1.61005 1.59876 1.02719 1.06537 1.18737 0.93902 0.86531 0.90202 0.96676 1.20804 0.96208 1.26092 1.08400 0.90125 1.25077 0.97622 0.94494 0.95803 1.69891 1.36729 1.27166 1.19056 0.87055 0.86600 0.79395 0.77530 1.20304 1.18915 1.21428 1.20511 0.92842 0.95956 0.95018 1.21000 0.97385 0.99456 0.93956 1.21078 0.98222 0.99268 0.95960 1.20885 0.93925 1.01926 0.99771 1.20938 0.97186 1.00575 0.95566 1.20998 0.98920 0.99975 0.95063 1.23030 1.00705 0.96683 0.96920 1.22778 1.01263 0.96267 0.97405 1.22997 1.00997 0.96428 0.96898 0.92675 0.94205 0.90580 0.90537 0.96932 0.87252 0.92544 0.85649 0.87104 0.87346 0.87248 0.87329 0.90814 0.91695 0.90480 0.92225 0.91638 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 8.93 37.16 0.33 -1.38 16 2 C -0.08 -1.17 1.10 -153.69 -0.17 -1.34 16 3 C 0.08 1.57 4.58 -3.82 -0.02 1.56 16 4 N -0.67 -13.33 4.76 -109.18 -0.52 -13.85 16 5 C 0.21 4.85 2.18 -70.02 -0.15 4.69 16 6 H 0.02 0.37 4.21 -51.93 -0.22 0.15 16 7 C -0.48 -12.96 8.84 -34.44 -0.30 -13.26 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 11 Si 0.87 21.07 26.97 -169.99 -4.58 16.48 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.10 6.16 56.52 0.35 -5.75 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 C -0.04 -0.88 4.64 -104.63 -0.49 -1.37 16 16 C -0.10 -1.92 9.09 -39.58 -0.36 -2.28 16 17 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 18 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 19 C -0.12 -2.12 10.05 -39.59 -0.40 -2.52 16 20 C -0.13 -2.57 9.67 -39.59 -0.38 -2.95 16 21 C -0.14 -1.79 7.21 -25.91 -0.19 -1.98 16 22 C -0.14 -1.65 7.73 -25.92 -0.20 -1.85 16 23 C -0.14 -1.84 7.23 -25.92 -0.19 -2.02 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.51 7.34 -51.93 -0.38 0.13 16 26 H 0.08 1.22 7.27 -51.93 -0.38 0.84 16 27 H 0.08 1.67 8.00 -51.93 -0.42 1.25 16 28 H 0.01 0.24 7.64 -51.93 -0.40 -0.15 16 29 H 0.31 5.64 8.16 -39.29 -0.32 5.32 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.13 2.42 7.92 -52.48 -0.42 2.01 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.11 2.09 7.99 -52.48 -0.42 1.67 16 36 H 0.07 0.99 7.96 -51.93 -0.41 0.57 16 37 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.08 0.84 7.64 -51.93 -0.40 0.45 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.86 8.10 -51.93 -0.42 0.43 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -28.74 328.11 -9.53 -38.28 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.74 Total: 8.15 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -3.41 Total: -28.03 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.25 Total: -39.82 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.58 Total: 16.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.74 -9.53 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233016582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.700 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds