Wall clock time and date at job start Mon Mar 30 2020 07:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 112.84791 * 2 1 4 4 N 1.46902 * 109.47245 * 48.80819 * 3 2 1 5 5 C 1.46898 * 110.99733 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47128 * 324.99637 * 5 4 3 7 7 C 1.50703 * 109.47283 * 84.99522 * 5 4 3 8 8 H 1.08003 * 119.99457 * 58.74243 * 7 5 4 9 9 C 1.37875 * 120.00264 * 238.73871 * 7 5 4 10 10 N 1.31516 * 119.99992 * 187.31611 * 9 7 5 11 11 Si 1.86798 * 119.99968 * 7.31666 * 9 7 5 12 12 H 1.48499 * 109.47120 * 275.09376 * 11 9 7 13 13 H 1.48503 * 109.47265 * 35.08775 * 11 9 7 14 14 H 1.48492 * 109.47274 * 155.08863 * 11 9 7 15 15 C 1.50698 * 109.47098 * 204.99583 * 5 4 3 16 16 C 1.38233 * 120.00154 * 313.49161 * 15 5 4 17 17 C 1.38236 * 120.00553 * 179.80991 * 16 15 5 18 18 C 1.38241 * 119.99260 * 0.39341 * 17 16 15 19 19 C 1.38232 * 120.00311 * 359.85754 * 18 17 16 20 20 C 1.38233 * 119.99778 * 359.95572 * 19 18 17 21 21 C 1.53786 * 113.68719 * 131.27018 * 2 1 3 22 22 C 1.53784 * 87.08055 * 89.12705 * 21 2 1 23 23 C 1.53777 * 87.08227 * 25.42988 * 22 21 2 24 24 H 1.08995 * 109.46742 * 69.66615 * 1 2 3 25 25 H 1.08997 * 109.47097 * 189.67115 * 1 2 3 26 26 H 1.08999 * 109.46805 * 309.66303 * 1 2 3 27 27 H 1.09000 * 109.47130 * 288.80248 * 3 2 1 28 28 H 1.09005 * 109.46717 * 168.80764 * 3 2 1 29 29 H 1.00897 * 111.00058 * 56.04667 * 4 3 2 30 30 H 0.97003 * 119.99877 * 180.02562 * 10 9 7 31 31 H 1.08007 * 119.99961 * 359.97438 * 16 15 5 32 32 H 1.07992 * 120.00658 * 180.23288 * 17 16 15 33 33 H 1.08003 * 119.99618 * 179.83902 * 18 17 16 34 34 H 1.08001 * 119.99991 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.99822 * 179.97438 * 20 19 18 36 36 H 1.09001 * 113.61060 * 203.67508 * 21 2 1 37 37 H 1.08997 * 113.61597 * 334.57608 * 21 2 1 38 38 H 1.09000 * 113.60705 * 270.88157 * 22 21 2 39 39 H 1.08999 * 113.61147 * 139.98207 * 22 21 2 40 40 H 1.08999 * 113.61655 * 220.02152 * 23 22 21 41 41 H 1.09000 * 113.61602 * 89.11724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4737 2.2154 1.0422 5 6 2.0206 3.5784 1.0720 6 1 3.0841 3.5485 0.8346 7 6 1.3030 4.4300 0.0567 8 1 0.2325 4.5589 0.1200 9 6 2.0128 5.0445 -0.9529 10 7 1.4134 5.9005 -1.7514 11 14 3.8261 4.6613 -1.1867 12 1 4.6341 5.5219 -0.2858 13 1 4.0761 3.2337 -0.8629 14 1 4.2096 4.9235 -2.5971 15 6 1.8291 4.1666 2.4462 16 6 0.6068 4.0542 3.0820 17 6 0.4322 4.5902 4.3441 18 6 1.4777 5.2458 4.9672 19 6 2.6985 5.3627 4.3294 20 6 2.8741 4.8232 3.0688 21 6 2.1479 -0.9289 1.0585 22 6 2.0950 -2.0420 -0.0013 23 6 2.1461 -0.9281 -1.0602 24 1 -0.3632 0.3571 -0.9636 25 1 -0.3633 -1.0130 0.1726 26 1 -0.3633 0.6559 0.7911 27 1 1.9600 1.8734 -0.9728 28 1 3.1943 1.3532 0.1995 29 1 1.5564 1.7731 1.9453 30 1 1.9127 6.3326 -2.4620 31 1 -0.2112 3.5453 2.5936 32 1 -0.5216 4.4992 4.8423 33 1 1.3405 5.6669 5.9523 34 1 3.5151 5.8752 4.8161 35 1 3.8278 4.9149 2.5703 36 1 3.1609 -0.6488 1.3473 37 1 1.4973 -1.1094 1.9142 38 1 1.1594 -2.6013 -0.0006 39 1 2.9744 -2.6861 -0.0023 40 1 1.4940 -1.1079 -1.9149 41 1 3.1586 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233016582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:17 Heat of formation + Delta-G solvation = 21.671502 kcal Electronic energy + Delta-G solvation = -19618.636334 eV Core-core repulsion = 16883.784504 eV Total energy + Delta-G solvation = -2734.851830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61429 -39.95542 -36.89228 -34.34504 -32.40712 -31.62082 -30.03491 -28.64206 -26.88991 -26.39089 -24.23085 -23.36260 -22.48316 -21.43311 -19.19957 -18.93331 -17.77618 -16.63616 -16.51799 -16.11847 -15.94615 -15.61093 -15.32393 -14.97629 -14.65910 -14.20205 -14.05974 -13.94913 -13.67384 -13.37985 -13.02981 -12.96969 -12.82443 -12.61137 -12.49697 -12.10123 -11.96243 -11.83743 -11.61814 -11.45747 -11.31031 -10.95395 -10.84698 -10.67322 -9.66766 -9.41036 -8.97443 -8.32161 -6.32008 0.63304 0.68018 1.23966 1.26404 1.34489 2.26607 2.91556 3.17208 3.48075 3.73366 3.79955 3.99118 4.04149 4.16473 4.24741 4.30424 4.37817 4.43497 4.57530 4.70899 4.81245 4.81691 4.84435 4.89618 4.94426 4.99814 5.03872 5.08658 5.15223 5.24814 5.27898 5.34108 5.39772 5.52783 5.57329 5.71399 5.74057 5.75799 5.93988 6.12899 6.29389 6.51937 6.69956 6.96698 7.31426 8.85051 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.008174 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.443502 B = 3424.645576 C = 4628.313686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C 0.086 3.914 4 N -0.670 5.670 5 C 0.221 3.779 6 H 0.007 0.993 7 C -0.472 4.472 8 H 0.033 0.967 9 C 0.016 3.984 10 N -0.944 5.944 11 Si 0.927 3.073 12 H -0.268 1.268 13 H -0.250 1.250 14 H -0.288 1.288 15 C -0.073 4.073 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.122 4.122 20 C -0.150 4.150 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.138 4.138 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.010 0.990 29 H 0.326 0.674 30 H 0.265 0.735 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 -11.944 10.139 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.086 4.086 3 C -0.043 4.043 4 N -0.300 5.300 5 C 0.113 3.887 6 H 0.025 0.975 7 C -0.511 4.511 8 H 0.052 0.948 9 C -0.181 4.181 10 N -0.584 5.584 11 Si 0.752 3.248 12 H -0.193 1.193 13 H -0.174 1.174 14 H -0.214 1.214 15 C -0.074 4.074 16 C -0.133 4.133 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.169 4.169 21 C -0.168 4.168 22 C -0.160 4.160 23 C -0.176 4.176 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.514 -11.663 9.581 15.301 hybrid contribution 1.534 0.462 -0.637 1.724 sum 4.048 -11.201 8.943 14.894 Atomic orbital electron populations 1.21345 0.92443 1.01308 1.01538 1.21936 0.96536 0.91842 0.98274 1.21765 0.93679 0.93230 0.95648 1.60730 1.59824 1.01901 1.07588 1.18486 0.92585 0.87192 0.90402 0.97498 1.20932 0.94282 1.26295 1.09625 0.94834 1.25826 1.02200 0.94479 0.95629 1.70042 1.38670 1.29310 1.20397 0.86066 0.81242 0.80052 0.77403 1.19302 1.17368 1.21431 1.20397 0.94429 0.97838 0.94749 1.21010 0.96448 1.00484 0.95372 1.21429 0.99989 0.98057 0.94731 1.21377 0.92843 1.00114 1.01051 1.21318 0.98733 0.99575 0.94366 1.21145 0.98514 1.00635 0.96572 1.22996 1.00496 0.96258 0.97023 1.22727 1.02806 0.95558 0.94958 1.23030 1.00637 0.96775 0.97186 0.94385 0.91400 0.92175 0.94292 0.97179 0.85627 0.92638 0.86897 0.84058 0.83303 0.84042 0.87660 0.90967 0.90709 0.89048 0.90533 0.91348 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 8.93 71.99 0.64 -2.58 16 2 C -0.09 -2.54 1.10 -51.65 -0.06 -2.60 16 3 C 0.09 3.34 4.58 86.30 0.39 3.73 16 4 N -0.67 -27.35 4.76 -499.35 -2.38 -29.73 16 5 C 0.22 10.37 2.18 43.42 0.09 10.47 16 6 H 0.01 0.35 4.21 -2.38 -0.01 0.34 16 7 C -0.47 -27.16 8.84 25.60 0.23 -26.93 16 8 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 9 C 0.02 0.96 5.47 84.65 0.46 1.42 16 10 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 11 Si 0.93 44.96 26.97 68.60 1.85 46.81 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.25 -11.33 6.16 99.48 0.61 -10.72 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 C -0.07 -3.10 4.64 -19.87 -0.09 -3.19 16 16 C -0.11 -4.41 9.09 22.27 0.20 -4.20 16 17 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 18 C -0.14 -3.81 10.05 22.27 0.22 -3.59 16 19 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 20 C -0.15 -5.74 9.67 22.27 0.22 -5.53 16 21 C -0.13 -3.13 7.21 31.12 0.22 -2.91 16 22 C -0.12 -2.52 7.73 31.12 0.24 -2.27 16 23 C -0.14 -3.56 7.23 31.12 0.23 -3.33 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.61 7.34 -2.39 -0.02 1.59 16 26 H 0.06 1.95 7.27 -2.39 -0.02 1.93 16 27 H 0.04 1.78 8.00 -2.39 -0.02 1.76 16 28 H 0.01 0.39 7.64 -2.38 -0.02 0.38 16 29 H 0.33 11.88 8.16 -89.70 -0.73 11.14 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.11 4.51 7.92 -2.91 -0.02 4.48 16 32 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.11 3.99 7.99 -2.91 -0.02 3.97 16 36 H 0.07 1.77 7.96 -2.39 -0.02 1.75 16 37 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.09 1.64 7.64 -2.39 -0.02 1.62 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -66.31 328.11 3.39 -62.92 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.17 Total: 28.04 kcal Atomic # 6 Polarization: -52.12 SS G_CDS: 3.45 Total: -48.67 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.08 Total: -89.10 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.85 Total: 46.81 kcal Total: -66.31 3.39 -62.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233016582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.588 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds