Wall clock time and date at job start Mon Mar 30 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 112.91089 * 2 1 4 4 N 1.46901 * 109.47193 * 311.25428 * 3 2 1 5 5 C 1.46896 * 111.00133 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47046 * 34.99861 * 5 4 3 7 7 C 1.50698 * 109.47195 * 274.99904 * 5 4 3 8 8 H 1.07998 * 120.00429 * 116.64082 * 7 5 4 9 9 C 1.37881 * 120.00019 * 296.63898 * 7 5 4 10 10 N 1.31517 * 119.99972 * 9.45901 * 9 7 5 11 11 Si 1.86802 * 120.00039 * 189.46018 * 9 7 5 12 12 H 1.48507 * 109.46824 * 89.99919 * 11 9 7 13 13 H 1.48495 * 109.47151 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.46897 * 329.99962 * 11 9 7 15 15 C 1.50705 * 109.47225 * 154.99731 * 5 4 3 16 16 C 1.38242 * 119.99462 * 28.47713 * 15 5 4 17 17 C 1.38238 * 119.99194 * 179.78738 * 16 15 5 18 18 C 1.38231 * 120.00358 * 0.44087 * 17 16 15 19 19 C 1.38231 * 119.99858 * 359.81308 * 18 17 16 20 20 C 1.38226 * 120.00011 * 208.74835 * 15 5 4 21 21 C 1.53787 * 113.61513 * 228.74990 * 2 1 3 22 22 C 1.53782 * 87.08236 * 220.01961 * 21 2 1 23 23 C 1.53783 * 113.61621 * 131.25329 * 2 1 3 24 24 H 1.08999 * 109.47307 * 288.74634 * 1 2 3 25 25 H 1.09007 * 109.47019 * 48.75065 * 1 2 3 26 26 H 1.08998 * 109.46906 * 168.74668 * 1 2 3 27 27 H 1.09007 * 109.46746 * 71.24958 * 3 2 1 28 28 H 1.09001 * 109.47557 * 191.25436 * 3 2 1 29 29 H 1.00906 * 111.00297 * 56.03813 * 4 3 2 30 30 H 0.96993 * 120.00215 * 180.02562 * 10 9 7 31 31 H 1.07992 * 120.00135 * 359.97438 * 16 15 5 32 32 H 1.08003 * 119.99259 * 180.27080 * 17 16 15 33 33 H 1.07998 * 120.00064 * 179.83724 * 18 17 16 34 34 H 1.08003 * 120.00120 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00654 * 359.97438 * 20 15 5 36 36 H 1.09001 * 113.61200 * 334.56734 * 21 2 1 37 37 H 1.09003 * 113.61262 * 105.46850 * 21 2 1 38 38 H 1.08999 * 113.61158 * 270.88457 * 22 21 2 39 39 H 1.08992 * 113.61436 * 139.98113 * 22 21 2 40 40 H 1.08994 * 113.61469 * 254.52862 * 23 2 1 41 41 H 1.09000 * 113.61133 * 25.43301 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 7 1.4750 2.2159 -1.0412 5 6 2.0224 3.5787 -1.0703 6 1 3.0859 3.5482 -0.8333 7 6 1.3056 4.4298 -0.0540 8 1 1.8496 4.8493 0.7793 9 6 -0.0450 4.6731 -0.1881 10 7 -0.7449 4.0181 -1.0885 11 14 -0.8805 5.9330 0.9092 12 1 -0.8283 7.2673 0.2595 13 1 -2.2969 5.5415 1.1228 14 1 -0.1804 5.9917 2.2175 15 6 1.8306 4.1680 -2.4440 16 6 0.7719 3.7553 -3.2314 17 6 0.5934 4.2991 -4.4897 18 6 1.4787 5.2487 -4.9643 19 6 2.5403 5.6574 -4.1790 20 6 2.7164 5.1169 -2.9189 21 6 2.1460 -0.9291 -1.0594 22 6 3.1923 -1.3137 -0.0001 23 6 2.1460 -0.9291 1.0593 24 1 -0.3634 0.3303 0.9731 25 1 -0.3633 0.6776 -0.7727 26 1 -0.3633 -1.0079 -0.2005 27 1 1.9627 1.8725 0.9732 28 1 3.1954 1.3517 -0.2006 29 1 0.4741 2.2312 -0.9142 30 1 -1.6949 4.1895 -1.1831 31 1 0.0826 3.0104 -2.8622 32 1 -0.2363 3.9798 -5.1031 33 1 1.3407 5.6715 -5.9484 34 1 3.2323 6.3991 -4.5499 35 1 3.5458 5.4365 -2.3054 36 1 1.4945 -1.7535 -1.3490 37 1 2.5650 -0.3988 -1.9146 38 1 4.0710 -0.6687 -0.0001 39 1 3.4443 -2.3740 -0.0001 40 1 2.5650 -0.3989 1.9145 41 1 1.4945 -1.7536 1.3489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233025575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:20 Heat of formation + Delta-G solvation = 29.030113 kcal Electronic energy + Delta-G solvation = -19936.055169 eV Core-core repulsion = 17201.522432 eV Total energy + Delta-G solvation = -2734.532736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49848 -39.71268 -36.80675 -33.81302 -32.07683 -31.29666 -30.23564 -28.34550 -26.50501 -26.09803 -24.23754 -23.07059 -22.53409 -21.50810 -19.01362 -18.46768 -17.44332 -16.86594 -16.21925 -15.97690 -15.73293 -15.43128 -15.07055 -14.76716 -14.25920 -14.08329 -13.85772 -13.75220 -13.35106 -13.13462 -13.05565 -12.86689 -12.80565 -12.59165 -12.26967 -12.13330 -11.98764 -11.74614 -11.40600 -11.29462 -11.08156 -10.88203 -10.77900 -10.59441 -9.42314 -9.10312 -8.77081 -7.97196 -6.28981 0.89039 1.03620 1.35054 1.39306 1.45007 2.38077 3.08039 3.39241 3.67631 3.82957 3.91986 4.06824 4.25428 4.38472 4.40277 4.48303 4.59348 4.69175 4.79717 4.82736 4.92194 4.94835 4.97267 5.02322 5.09056 5.11923 5.18944 5.20676 5.24037 5.33623 5.44800 5.52316 5.63527 5.65773 5.69979 5.76625 5.93121 6.09832 6.11026 6.37930 6.53766 6.62801 6.99371 7.26374 7.47250 8.83267 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.008048 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.394479 B = 3478.346672 C = 4549.280637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C 0.095 3.905 4 N -0.685 5.685 5 C 0.237 3.763 6 H 0.021 0.979 7 C -0.564 4.564 8 H 0.039 0.961 9 C 0.045 3.955 10 N -0.875 5.875 11 Si 0.937 3.063 12 H -0.283 1.283 13 H -0.279 1.279 14 H -0.278 1.278 15 C -0.043 4.043 16 C -0.065 4.065 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.128 4.128 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.069 0.931 27 H -0.001 1.001 28 H 0.050 0.950 29 H 0.359 0.641 30 H 0.266 0.734 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -6.848 -1.792 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.035 4.035 4 N -0.321 5.321 5 C 0.128 3.872 6 H 0.039 0.961 7 C -0.603 4.603 8 H 0.058 0.942 9 C -0.158 4.158 10 N -0.512 5.512 11 Si 0.764 3.236 12 H -0.210 1.210 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.044 4.044 16 C -0.084 4.084 17 C -0.174 4.174 18 C -0.166 4.166 19 C -0.160 4.160 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.169 4.169 23 C -0.166 4.166 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.184 0.816 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.210 -7.109 -2.354 8.147 hybrid contribution -0.967 1.586 1.632 2.472 sum 2.243 -5.523 -0.722 6.005 Atomic orbital electron populations 1.21641 0.94927 1.01535 1.00671 1.21793 0.94960 0.93535 0.98220 1.21433 0.97229 0.92129 0.92702 1.60970 1.12111 1.12510 1.46512 1.18010 0.92866 0.86809 0.89478 0.96126 1.21751 0.94547 1.34148 1.09885 0.94238 1.25414 0.97559 0.96656 0.96163 1.69768 1.07695 1.39944 1.33752 0.85898 0.78016 0.80252 0.79442 1.20951 1.20425 1.20304 1.20190 0.94106 0.95121 0.95012 1.21156 0.95884 0.99293 0.92059 1.21365 1.00203 0.99222 0.96641 1.21170 0.95928 0.99041 1.00454 1.21128 0.99296 1.01150 0.94436 1.21068 1.00278 0.98933 0.96797 1.22906 0.98207 0.98325 0.96563 1.22748 0.96560 1.01580 0.96016 1.23006 0.98365 0.98863 0.96327 0.94105 0.93726 0.91166 0.98297 0.93115 0.81599 0.92404 0.85937 0.86099 0.84682 0.84823 0.87447 0.89398 0.92865 0.91042 0.89885 0.92300 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 8.88 71.98 0.64 -3.72 16 2 C -0.08 -2.77 1.17 -51.65 -0.06 -2.84 16 3 C 0.10 3.87 4.90 86.30 0.42 4.29 16 4 N -0.69 -31.60 5.23 -499.35 -2.61 -34.21 16 5 C 0.24 11.85 2.50 43.42 0.11 11.96 16 6 H 0.02 1.04 7.75 -2.39 -0.02 1.02 16 7 C -0.56 -30.34 8.61 25.60 0.22 -30.12 16 8 H 0.04 2.18 7.83 -2.91 -0.02 2.16 16 9 C 0.05 2.37 5.04 84.66 0.43 2.80 16 10 N -0.87 -45.10 8.08 21.45 0.17 -44.93 16 11 Si 0.94 42.72 29.55 68.60 2.03 44.75 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 C -0.04 -2.08 4.66 -19.86 -0.09 -2.18 16 16 C -0.07 -3.04 7.49 22.27 0.17 -2.87 16 17 C -0.16 -6.31 10.05 22.27 0.22 -6.08 16 18 C -0.15 -5.37 10.05 22.27 0.22 -5.15 16 19 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 20 C -0.15 -6.63 9.71 22.27 0.22 -6.41 16 21 C -0.12 -3.53 7.20 31.12 0.22 -3.30 16 22 C -0.13 -3.24 7.73 31.12 0.24 -3.00 16 23 C -0.13 -3.37 7.23 31.12 0.23 -3.15 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.73 6.22 -2.38 -0.01 1.72 16 26 H 0.07 1.94 7.94 -2.39 -0.02 1.92 16 27 H 0.00 -0.05 8.00 -2.38 -0.02 -0.07 16 28 H 0.05 2.01 7.25 -2.39 -0.02 2.00 16 29 H 0.36 17.52 3.67 -89.69 -0.33 17.19 16 30 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 31 H 0.12 6.12 5.70 -2.91 -0.02 6.10 16 32 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 36 H 0.09 2.22 7.96 -2.39 -0.02 2.20 16 37 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 38 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -55.38 320.55 3.66 -51.72 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.66 Total: 37.54 kcal Atomic # 6 Polarization: -58.27 SS G_CDS: 3.41 Total: -54.86 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.44 Total: -79.14 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -55.38 3.66 -51.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233025575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.748 kcal (2) G-P(sol) polarization free energy of solvation -55.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds