Wall clock time and date at job start Mon Mar 30 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47370 * 269.99995 * 3 2 1 5 5 H 1.48502 * 109.46985 * 29.99917 * 3 2 1 6 6 H 1.48501 * 109.47114 * 149.99705 * 3 2 1 7 7 C 1.37879 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99917 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00286 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47436 * 179.97438 * 10 9 7 12 12 N 1.46909 * 109.47085 * 179.97438 * 11 10 9 13 13 C 1.46897 * 110.99752 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46721 * 180.02562 * 13 12 11 15 15 C 1.38962 * 119.59630 * 90.00060 * 14 13 12 16 16 C 1.36471 * 120.63537 * 179.97438 * 15 14 13 17 17 C 1.39945 * 119.63457 * 0.02562 * 16 15 14 18 18 C 1.45922 * 134.03571 * 179.97438 * 17 16 15 19 19 N 1.30249 * 107.78669 * 180.02562 * 18 17 16 20 20 N 1.39871 * 110.08229 * 0.02562 * 19 18 17 21 21 H 0.97000 * 125.46207 * 180.02562 * 20 19 18 22 22 C 1.37037 * 109.07804 * 0.02562 * 20 19 18 23 23 C 1.36595 * 119.59269 * 270.22539 * 14 13 12 24 24 H 0.97003 * 120.00193 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47531 * 59.99533 * 9 7 2 26 26 H 1.09008 * 109.47022 * 299.99839 * 9 7 2 27 27 H 1.09003 * 109.46976 * 59.99301 * 10 9 7 28 28 H 1.09002 * 109.47264 * 300.00278 * 10 9 7 29 29 H 1.08999 * 109.46886 * 60.00618 * 11 10 9 30 30 H 1.08996 * 109.47333 * 299.99734 * 11 10 9 31 31 H 1.00902 * 110.99549 * 56.04927 * 12 11 10 32 32 H 1.08998 * 109.46765 * 60.00342 * 13 12 11 33 33 H 1.08994 * 109.47319 * 299.99731 * 13 12 11 34 34 H 1.08002 * 119.68453 * 359.97438 * 15 14 13 35 35 H 1.07993 * 120.18159 * 180.02562 * 16 15 14 36 36 H 1.07998 * 126.10978 * 0.05930 * 18 17 16 37 37 H 1.07995 * 120.07585 * 359.80390 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5516 -2.6364 0.0022 12 7 6.0413 -4.0215 0.0040 13 6 7.5098 -4.0606 0.0046 14 6 7.9740 -5.4943 0.0057 15 6 8.1859 -6.1480 -1.2021 16 6 8.6068 -7.4460 -1.2258 17 6 8.8262 -8.1244 -0.0216 18 6 9.2634 -9.4748 0.3167 19 7 9.2933 -9.5697 1.6154 20 7 8.9001 -8.3588 2.1946 21 1 8.8427 -8.1829 3.1468 22 6 8.6089 -7.4609 1.2013 23 6 8.1769 -6.1366 1.1940 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6585 -3.1509 -0.8875 28 1 3.6579 -3.1497 0.8925 29 1 5.9149 -2.1219 0.8918 30 1 5.9149 -2.1233 -0.8882 31 1 5.6658 -4.5387 -0.7768 32 1 7.8862 -3.5556 0.8942 33 1 7.8870 -3.5577 -0.8858 34 1 8.0159 -5.6239 -2.1310 35 1 8.7695 -7.9468 -2.1686 36 1 9.5174 -10.2560 -0.3844 37 1 8.0081 -5.6173 2.1257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237817455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:03 Heat of formation + Delta-G solvation = 70.662914 kcal Electronic energy + Delta-G solvation = -17645.254012 eV Core-core repulsion = 14808.986266 eV Total energy + Delta-G solvation = -2836.267746 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45517 -38.17734 -36.09335 -33.61580 -32.65052 -31.77147 -30.15199 -29.61191 -27.04951 -24.73227 -22.99272 -22.08768 -21.86916 -21.31598 -20.04120 -17.93906 -16.88703 -16.69738 -16.06024 -15.13390 -14.93601 -14.85289 -14.62723 -14.19194 -14.03251 -13.86772 -13.48905 -12.70367 -12.56767 -12.03220 -11.92560 -11.67561 -11.65629 -11.24848 -11.06337 -10.93720 -10.77650 -10.55207 -9.95645 -9.73668 -9.60503 -9.16541 -8.80740 -8.52534 -8.27952 -8.23477 -6.02682 -4.00472 0.70699 1.29764 2.24216 2.45550 3.30974 3.38420 3.42074 3.52620 4.30561 4.36269 4.44722 4.46255 4.58621 4.73936 5.03530 5.08919 5.26485 5.31151 5.42864 5.47097 5.62348 5.68704 5.75298 5.79545 6.11877 6.15862 6.20364 6.43173 6.52745 6.56853 6.62946 6.91635 7.02912 7.15726 7.31043 7.35535 7.43537 7.53122 7.81696 8.56572 9.03020 9.59852 11.10930 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.046270 B = 0.002845 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.997259 B = 9838.675719 C = 9948.354269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.685 5.685 13 C 0.093 3.907 14 C -0.026 4.026 15 C -0.150 4.150 16 C -0.042 4.042 17 C -0.185 4.185 18 C 0.074 3.926 19 N -0.255 5.255 20 N -0.512 5.512 21 H 0.439 0.561 22 C 0.129 3.871 23 C -0.120 4.120 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.009 0.991 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.342 0.658 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.196 0.804 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.644 -15.035 -0.904 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.072 4.072 12 N -0.316 5.316 13 C -0.036 4.036 14 C -0.030 4.030 15 C -0.170 4.170 16 C -0.062 4.062 17 C -0.193 4.193 18 C -0.123 4.123 19 N -0.068 5.068 20 N -0.227 5.227 21 H 0.284 0.716 22 C 0.013 3.987 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.159 0.841 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.213 0.787 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.690 -15.751 0.801 26.818 hybrid contribution 0.276 1.780 -1.055 2.087 sum 21.966 -13.972 -0.253 26.034 Atomic orbital electron populations 1.69918 1.06312 1.26837 1.51327 1.25049 0.94738 0.99189 0.94653 0.86761 0.80359 0.83622 0.78426 1.20371 1.21423 1.19022 1.21158 0.89545 0.94465 1.50543 0.91024 1.19542 0.97155 0.92260 0.96103 1.21446 0.90997 0.99672 1.01653 1.22186 0.97727 0.87336 0.99968 1.60575 1.05474 1.15199 1.50339 1.20943 0.89524 0.91537 1.01550 1.19406 0.95510 0.95788 0.92263 1.20619 1.03695 0.95039 0.97682 1.20288 0.96136 0.93777 0.96017 1.19921 1.11028 0.94639 0.93732 1.25086 0.98998 0.95792 0.92470 1.76544 1.16874 1.03362 1.10024 1.45950 1.60995 1.07632 1.08101 0.71619 1.18837 0.98444 0.92398 0.88983 1.19683 1.04534 0.91014 0.99082 0.92775 0.96630 0.97268 0.92994 0.91916 0.91397 0.95608 0.84053 0.90135 0.94123 0.85663 0.85400 0.78739 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.30 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.96 5.41 -26.73 -0.14 -2.11 16 11 C 0.06 0.88 5.69 -3.82 -0.02 0.86 16 12 N -0.68 -9.23 6.49 -115.06 -0.75 -9.97 16 13 C 0.09 1.02 5.78 -4.98 -0.03 1.00 16 14 C -0.03 -0.28 5.36 -104.95 -0.56 -0.84 16 15 C -0.15 -1.42 9.60 -39.95 -0.38 -1.80 16 16 C -0.04 -0.37 10.07 -39.58 -0.40 -0.77 16 17 C -0.19 -1.89 6.37 -105.21 -0.67 -2.56 16 18 C 0.07 0.67 12.28 -15.15 -0.19 0.48 16 19 N -0.25 -2.71 12.55 31.87 0.40 -2.31 16 20 N -0.51 -5.10 7.37 32.36 0.24 -4.86 16 21 H 0.44 3.22 8.96 -182.77 -1.64 1.58 16 22 C 0.13 1.40 7.34 -84.17 -0.62 0.79 16 23 C -0.12 -1.28 9.65 -39.78 -0.38 -1.67 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 26 H 0.01 0.21 7.57 -51.92 -0.39 -0.18 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.34 4.42 8.72 -39.29 -0.34 4.08 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -33.05 315.00 -9.75 -42.80 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.56 Total: 0.42 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.94 Total: -20.55 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.67 Total: -44.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.05 -9.75 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237817455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.461 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds