Wall clock time and date at job start Mon Mar 30 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47370 * 269.99995 * 3 2 1 5 5 H 1.48502 * 109.46985 * 29.99917 * 3 2 1 6 6 H 1.48501 * 109.47114 * 149.99705 * 3 2 1 7 7 C 1.37879 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99917 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00286 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47436 * 179.97438 * 10 9 7 12 12 N 1.46909 * 109.47085 * 179.97438 * 11 10 9 13 13 C 1.46897 * 110.99752 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46721 * 180.02562 * 13 12 11 15 15 C 1.38962 * 119.59630 * 90.00060 * 14 13 12 16 16 C 1.36471 * 120.63537 * 179.97438 * 15 14 13 17 17 C 1.39945 * 119.63457 * 0.02562 * 16 15 14 18 18 C 1.45922 * 134.03571 * 179.97438 * 17 16 15 19 19 N 1.30249 * 107.78669 * 180.02562 * 18 17 16 20 20 N 1.39871 * 110.08229 * 0.02562 * 19 18 17 21 21 H 0.97000 * 125.46207 * 180.02562 * 20 19 18 22 22 C 1.37037 * 109.07804 * 0.02562 * 20 19 18 23 23 C 1.36595 * 119.59269 * 270.22539 * 14 13 12 24 24 H 0.97003 * 120.00193 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47531 * 59.99533 * 9 7 2 26 26 H 1.09008 * 109.47022 * 299.99839 * 9 7 2 27 27 H 1.09003 * 109.46976 * 59.99301 * 10 9 7 28 28 H 1.09002 * 109.47264 * 300.00278 * 10 9 7 29 29 H 1.08999 * 109.46886 * 60.00618 * 11 10 9 30 30 H 1.08996 * 109.47333 * 299.99734 * 11 10 9 31 31 H 1.00902 * 110.99549 * 56.04927 * 12 11 10 32 32 H 1.08998 * 109.46765 * 60.00342 * 13 12 11 33 33 H 1.08994 * 109.47319 * 299.99731 * 13 12 11 34 34 H 1.08002 * 119.68453 * 359.97438 * 15 14 13 35 35 H 1.07993 * 120.18159 * 180.02562 * 16 15 14 36 36 H 1.07998 * 126.10978 * 0.05930 * 18 17 16 37 37 H 1.07995 * 120.07585 * 359.80390 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5516 -2.6364 0.0022 12 7 6.0413 -4.0215 0.0040 13 6 7.5098 -4.0606 0.0046 14 6 7.9740 -5.4943 0.0057 15 6 8.1859 -6.1480 -1.2021 16 6 8.6068 -7.4460 -1.2258 17 6 8.8262 -8.1244 -0.0216 18 6 9.2634 -9.4748 0.3167 19 7 9.2933 -9.5697 1.6154 20 7 8.9001 -8.3588 2.1946 21 1 8.8427 -8.1829 3.1468 22 6 8.6089 -7.4609 1.2013 23 6 8.1769 -6.1366 1.1940 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6585 -3.1509 -0.8875 28 1 3.6579 -3.1497 0.8925 29 1 5.9149 -2.1219 0.8918 30 1 5.9149 -2.1233 -0.8882 31 1 5.6658 -4.5387 -0.7768 32 1 7.8862 -3.5556 0.8942 33 1 7.8870 -3.5577 -0.8858 34 1 8.0159 -5.6239 -2.1310 35 1 8.7695 -7.9468 -2.1686 36 1 9.5174 -10.2560 -0.3844 37 1 8.0081 -5.6173 2.1257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237817455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:03 Heat of formation + Delta-G solvation = 48.083610 kcal Electronic energy + Delta-G solvation = -17646.233124 eV Core-core repulsion = 14808.986266 eV Total energy + Delta-G solvation = -2837.246858 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.16587 -38.99528 -37.27362 -35.36106 -33.69032 -33.21008 -31.28838 -30.32558 -28.55872 -25.95905 -23.75035 -23.59044 -22.57577 -22.20867 -21.63949 -18.90951 -18.66160 -17.55912 -17.11179 -16.41662 -15.97715 -15.85156 -15.61925 -15.41270 -15.11261 -14.76708 -14.65898 -14.49711 -13.79399 -13.50234 -13.12604 -12.78487 -12.65236 -12.58486 -12.40889 -11.99699 -11.82298 -11.76754 -11.48796 -11.44730 -11.27494 -11.24059 -10.75228 -9.61217 -9.28432 -8.95452 -8.28313 -6.32800 -0.02295 0.56922 1.37066 1.39644 1.51840 1.54129 1.78566 2.37787 2.76893 3.07037 3.42640 3.63335 3.75988 3.86361 3.95162 4.23356 4.28309 4.37344 4.41279 4.56815 4.68217 4.72373 4.80881 4.92118 4.93777 5.01044 5.09293 5.13794 5.42926 5.51420 5.54152 5.63397 5.68090 5.69004 5.94046 6.09612 6.31010 6.35502 6.47971 6.62027 6.76013 7.31866 8.88849 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.046270 B = 0.002845 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.997259 B = 9838.675719 C = 9948.354269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.070 3.930 12 N -0.693 5.693 13 C 0.098 3.902 14 C -0.033 4.033 15 C -0.159 4.159 16 C -0.037 4.037 17 C -0.202 4.202 18 C 0.082 3.918 19 N -0.282 5.282 20 N -0.516 5.516 21 H 0.446 0.554 22 C 0.111 3.889 23 C -0.134 4.134 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.345 0.655 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.232 0.768 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.115 -14.630 -1.939 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.048 4.048 10 C -0.130 4.130 11 C -0.059 4.059 12 N -0.324 5.324 13 C -0.031 4.031 14 C -0.036 4.036 15 C -0.178 4.178 16 C -0.057 4.057 17 C -0.210 4.210 18 C -0.116 4.116 19 N -0.095 5.095 20 N -0.232 5.232 21 H 0.291 0.709 22 C -0.004 4.004 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.248 0.752 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.184 -15.370 -0.222 28.656 hybrid contribution -0.551 1.528 -0.748 1.788 sum 23.632 -13.842 -0.970 27.405 Atomic orbital electron populations 1.70084 1.08462 1.28192 1.52817 1.26109 0.95676 1.03828 0.94092 0.85575 0.79508 0.77764 0.79281 1.18980 1.21134 1.16684 1.21548 0.92445 0.92984 1.50289 0.95412 1.19492 0.93610 0.95087 0.96610 1.21271 0.94241 0.96841 1.00649 1.21904 0.94353 0.88864 1.00737 1.60482 1.07322 1.13827 1.50787 1.20942 0.87663 0.92145 1.02330 1.19449 0.95825 0.95605 0.92723 1.20861 1.03612 0.95464 0.97897 1.20635 0.94737 0.93583 0.96790 1.20295 1.11365 0.95336 0.94035 1.25736 0.97344 0.96104 0.92402 1.76516 1.18113 1.03865 1.11050 1.46015 1.61177 1.07499 1.08526 0.70868 1.19065 0.98884 0.92717 0.89781 1.19790 1.05209 0.91258 0.99457 0.92524 0.96109 0.96059 0.93485 0.93592 0.91039 0.94383 0.83732 0.89901 0.92700 0.83982 0.82452 0.75161 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 2 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 3 Si 0.96 44.31 27.47 68.60 1.88 46.20 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 7 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.47 4.04 29.84 0.12 -0.35 16 10 C -0.09 -3.56 5.41 30.59 0.17 -3.40 16 11 C 0.07 2.05 5.69 86.30 0.49 2.54 16 12 N -0.69 -17.43 6.49 -517.94 -3.36 -20.79 16 13 C 0.10 1.93 5.78 85.56 0.49 2.42 16 14 C -0.03 -0.64 5.36 -20.08 -0.11 -0.75 16 15 C -0.16 -2.62 9.60 22.03 0.21 -2.41 16 16 C -0.04 -0.57 10.07 22.27 0.22 -0.34 16 17 C -0.20 -3.79 6.37 -20.25 -0.13 -3.91 16 18 C 0.08 1.31 12.28 86.92 1.07 2.37 16 19 N -0.28 -5.74 12.55 -53.09 -0.67 -6.41 16 20 N -0.52 -10.16 7.37 -51.53 -0.38 -10.54 16 21 H 0.45 6.65 8.96 -213.47 -1.91 4.74 16 22 C 0.11 2.35 7.34 39.21 0.29 2.64 16 23 C -0.13 -2.77 9.65 22.14 0.21 -2.56 16 24 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 26 H 0.02 0.94 7.57 -2.38 -0.02 0.92 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.34 8.33 8.72 -89.69 -0.78 7.55 16 32 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -72.24 315.00 -0.14 -72.39 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -1.67 Total: 14.30 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.75 Total: -34.54 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.11 Total: -98.35 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -72.24 -0.14 -72.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237817455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.471 kcal (2) G-P(sol) polarization free energy of solvation -72.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds